BAC Information

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BAC

Clone NameB6Ng01-141L01
Chromosome5 (Build37)
Map Location 90,624,823 - 90,661,569
singlet/doubletdoublet
Overlap geneCox18, Ankrd17
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141L01.bB6Ng01-141L01.g
ACCDH940084DH940085
length938517
definitionDH940084|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L01, 5' end.DH940085|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,624,823 - 90,625,627)(90,661,047 - 90,661,569)
sequence
gaattctcctcctgctggccagggtcatagtctactgcaaacagatgtgt
ggtggatccacagtgcaactttgtagcattgggaccccttcagtgaggct
ctagtgaccgctggcagtgtctcttgactaggacctaaagttagtggagc
tccggaggtgaacttgttttatagaaagcacgaagtttaggccaaacatg
ttatatacccattggacaccctcaagattgtctaataattggtgatcatc
tgcttctataataacttctgccagcaggtgaatcaaacataattttaaaa
ggggtgagtctcagccaggcgtggtggcacaggcctttaatcccagcact
cgggaggcagaggcaggcagatttctgagttccaggccagcctggtctac
aaagtgagttccaggacagccagggatacacaaagaaaccctgtctcaaa
aaaccaaaaaaaacaaaaacaaaaacaaaaaaacaaaaaaacaaacaaaa
acaaaaaaacaaaaaaggggggggtgagtctcatctggtattggggactt
ccatacgctataaagggcaaaggggaggagagtcacccagtctctgacag
tctctaaggtcaatttagttaaggtctctttagggtactatttatctttt
ctacctattctaaactctggggtctgtaagcacaatgaagtttccaatca
atctacagaatattatttaattcctgacttacctgggacacacatgtagg
tcctttgtctgaccctataaacctaggaaaactgtaccttaggagaattt
ctttttagcagtttctgtgttatcatctgagcagtctcatactcagttgg
gaaagcgttaattcaaacccgaaaaggtatctacaagcatcagtaaaata
ttttatatctaaaatgtttcttgtttctaactgtggtg
acaatttggtataagttaaaataggaattaaaaagccttttttaaatttt
cttttttttaaagctgtgtcttgattttgaatgttaccaacgtttgtttc
cgactttcttttctctcagacaaagtggactggtgtaaccctgggatggg
aaatcccatgattcacaggccaatgtctgacccaggagtgttttcacagc
atcaagcaatggagcgagatagtacagggattgtaaccccttctggtaca
ttccatcagcatgttcctgcaggatacatggactttcctaaagttggggt
aatttaaatacatattttcattattacaaaagatctttttgtttgtctga
ttgtttgtgcttgtttatccctagtcatctttcatttccaagtgcataag
ctgtgaagtctggagcttggcaggtcagactggctaggatagtctttcta
gccatttaggggactcctatttcagcagttgtttgttggtttgtttggtt
ggggtatgttgtttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90624823_90625627
seq2: B6Ng01-141L01.b_48_852

seq1  GAATTCTCCTCCTGCTGGCCAGGGTCATAGTCTACTGCAAACAGATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCTGCTGGCCAGGGTCATAGTCTACTGCAAACAGATGTGT  50

seq1  GGTGGATCCACAGTGCAACTTTGTAGCATTGGGACCCCTTCAGTGAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCCACAGTGCAACTTTGTAGCATTGGGACCCCTTCAGTGAGGCT  100

seq1  CTAGTGACCGCTGGCAGTGTCTCTTGACTAGGACCTAAAGTTAGTGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGACCGCTGGCAGTGTCTCTTGACTAGGACCTAAAGTTAGTGGAGC  150

seq1  TCCGGAGGTGAACTTGTTTTATAGAAAGCACGAAGTTTAGGCCAAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGGTGAACTTGTTTTATAGAAAGCACGAAGTTTAGGCCAAACATG  200

seq1  TTATATACCCATTGGACACCCTCAAGATTGTCTAATAATTGGTGATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACCCATTGGACACCCTCAAGATTGTCTAATAATTGGTGATCATC  250

seq1  TGCTTCTATAATAACTTCTGCCAGCAGGTGAATCAAACATAATTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTATAATAACTTCTGCCAGCAGGTGAATCAAACATAATTTTAAAA  300

seq1  GGGGTGAGTCTCAGCCAGGCGTGGTGGCACAGGCCTTTAATCCCAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGTCTCAGCCAGGCGTGGTGGCACAGGCCTTTAATCCCAGCACT  350

seq1  CGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTAC  400

seq1  AAAGTGAGTTCCAGGACAGCCAGGGATACACAAAGAAACCCTGTCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGACAGCCAGGGATACACAAAGAAACCCTGTCTCAAA  450

seq1  AAACCAAAAAAAACAAAAACAAAAACAAAAAAACAAAAAAACAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAAAACAAAAACAAAAACAAAAAAACAAAAAAACAAACAAAA  500

seq1  ACAAAAAAACAAAAAAGGGGGGGGTGAGTCTCATCTGGTATTGGGGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACAAAAAAGGGGGGGGTGAGTCTCATCTGGTATTGGGGACTT  550

seq1  CCATACGCTATAAAGGGCAAAGGGGAGGAGAGTCACCCAGTCTCTGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACGCTATAAAGGGCAAAGGGGAGGAGAGTCACCCAGTCTCTGACAG  600

seq1  TCTCTAAGGTCAATTTAGTTAAGGTCTCTTTAGGGTACTATTTATCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGGTCAATTTAGTTAAGGTCTCTTTAGGGTACTATTTATCTTTT  650

seq1  CTACCTATTCTAAACTCTGGGGTCTGTAAGCACAATGAAGTTTCCAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTATTCTAAACTCTGGGGTCTGTAAGCACAATGAAGTTTCCAATCA  700

seq1  ATCTACAGAATATTATTTAATTCCTGACTTACCTGGGACACACATGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGAATATTATTTAATTCCTGACTTACCTGGGACACACATGTAGG  750

seq1  TCCTTTGTCTGACCCTATAAACCTAGGAAAACTGTACCTTAGGAGAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTCTGACCCTATAAACCTAGGAAAACTGTACCTTAGGAGAATTT  800

seq1  CTTTT  805
      |||||
seq2  CTTTT  805

seq1: chr5_90661047_90661569
seq2: B6Ng01-141L01.g_68_590 (reverse)

seq1  AATAAACAACATACCCCAACCAAACAAACCAACAAACAACTGCTGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAACATACCCCAACCAAACAAACCAACAAACAACTGCTGAAATA  50

seq1  GGAGTCCCCTAAATGGCTAGAAAGACTATCCTAGCCAGTCTGACCTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCCTAAATGGCTAGAAAGACTATCCTAGCCAGTCTGACCTGCCA  100

seq1  AGCTCCAGACTTCACAGCTTATGCACTTGGAAATGAAAGATGACTAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGACTTCACAGCTTATGCACTTGGAAATGAAAGATGACTAGGGA  150

seq1  TAAACAAGCACAAACAATCAGACAAACAAAAAGATCTTTTGTAATAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGCACAAACAATCAGACAAACAAAAAGATCTTTTGTAATAATGA  200

seq1  AAATATGTATTTAAATTACCCCAACTTTAGGAAAGTCCATGTATCCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTATTTAAATTACCCCAACTTTAGGAAAGTCCATGTATCCTGCA  250

seq1  GGAACATGCTGATGGAATGTACCAGAAGGGGTTACAATCCCTGTACTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGCTGATGGAATGTACCAGAAGGGGTTACAATCCCTGTACTATC  300

seq1  TCGCTCCATTGCTTGATGCTGTGAAAACACTCCTGGGTCAGACATTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCCATTGCTTGATGCTGTGAAAACACTCCTGGGTCAGACATTGGCC  350

seq1  TGTGAATCATGGGATTTCCCATCCCAGGGTTACACCAGTCCACTTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATCATGGGATTTCCCATCCCAGGGTTACACCAGTCCACTTTGTCT  400

seq1  GAGAGAAAAGAAAGTCGGAAACAAACGTTGGTAACATTCAAAATCAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAGAAAGTCGGAAACAAACGTTGGTAACATTCAAAATCAAGAC  450

seq1  ACAGCTTTAAAAAAAAGAAAATTTAAAAAAGGCTTTTTAATTCCTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTAAAAAAAAGAAAATTTAAAAAAGGCTTTTTAATTCCTATTTT  500

seq1  AACTTATACCAAATTGTGAATTC  523
      |||||||||||||||||||||||
seq2  AACTTATACCAAATTGTGAATTC  523