BAC Information

Click to search

BAC

Clone NameB6Ng01-141M05
Chromosome5 (Build37)
Map Location 124,339,908 - 124,475,204
singlet/doubletdoublet
Overlap geneDenr, Ccdc62, Hip1r, Vps37b
Upstream geneFbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81
Downstream geneAbcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141M05.bB6Ng01-141M05.g
ACCDH940138DH940139
length1,080514
definitionDH940138|Mus musculus domesticus DNA, BAC clone: B6Ng01-141M05, 5' end.DH940139|Mus musculus domesticus DNA, BAC clone: B6Ng01-141M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,339,908 - 124,340,981)(124,474,691 - 124,475,204)
sequence
gaattctgccacgtgggtttaaagggagttcattcacaggttgggagatc
ttcctgttgttggtttgttgtttttaataatttatacattcccactgtca
catagcttcctcctgggcctgttaccacaatcctgagaaaaggccgagtt
cctcctccctcccgacttttctcttcttcctcccacctagaggcagcctc
tgtattccctccccctcccatatgagacctgtcacatggtgtgactgcat
agatccaacagtgacagattcccctggaacagacagttgtgagctgccat
gtgggtgctgggactcgaacccacatcctctggttctagagatggtcact
gagccatctctccagccccttgttttgttttttatttttattttcttttt
taaaaaagagatttatctatttataatatgtagatacattgtagcagcct
tcagacgcctcagaagagggcatcagagttcattgggaatggttgtgagc
caccctgtggttgctgggatttgaactcaggacctttagaagagcagtca
gtgctcttaaccgctgagccatctctccagcccctggccttgaacttttt
tacacttgaagttctggctcagctccttaagggctgagattacaggcatg
taccaacatatccctctggctgtgagtcttcatcaatctaggtcacttct
ctcaggttctctgcaagagcagccagtgttcttagccatcttcccaaccc
cacctcctctttcctgagaaatggtttggctgtgtagtccaggctggctt
caaactcaggataactcctcaaacgctgaaattgtaggaatgtaacactt
tatccctctgtagcggggctttcatggtctacttgtggtttaataatgaa
ctcggaaacatctatatagtttaaggctgttggccttttgctggggcaat
ctctcagctacttctaacttaacctgacttctctgccattgtgctctggt
gtggcgcttctcgctatttactgtcctctgccatctcctgctttgccctg
cagtcctggctcaggctcagccccagctcc
acaggctctctaccaccaaactggaccctcagccccaaggatcatgctgg
tacacacagtactggaacttaaacacactgtagtcaggggaaacccagtg
tgtttgggtcatggaggaagcctttggggcatggaggaaggtcacagagt
gtttcctggctgagcgtgactgagctgggatccagaggctgagatatagg
tcatcaggagctaagggagtgggctctagggcctgggtggacagcaggaa
caaagactccccgcagggttctggagctacaaaggcgcagtgacatagta
acatgcttgagggaccagtgctaggctgatgctagagaggcaggcaggcg
ggcgggtggcaccagatggccttgctggccaccagggtaaggagcttggc
ctgatcctctggagagccactccaggatttaagccagggagcattgcagt
tggctgcccttgacatttatggagatgagtctgctctgcgtggggggatg
atttgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124339908_124340981
seq2: B6Ng01-141M05.b_49_1128

seq1  GAATTCTGCCACGTGGGTTTAAAGGGAGTTCATTCACAGGTTGGGAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCACGTGGGTTTAAAGGGAGTTCATTCACAGGTTGGGAGATC  50

seq1  TTCCTGTTGTTGGTTTGTTGTTTTTAATAATTTATACATTCCCACTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTGTTGGTTTGTTGTTTTTAATAATTTATACATTCCCACTGTCA  100

seq1  CATAGCTTCCTCCTGGGCCTGTTACCACAATCCTGAGAAAAGGCCGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTCCTCCTGGGCCTGTTACCACAATCCTGAGAAAAGGCCGAGTT  150

seq1  CCTCCTCCCTCCCGACTTTTCTCTTCTTCCTCCCACCTAGAGGCAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCTCCCGACTTTTCTCTTCTTCCTCCCACCTAGAGGCAGCCTC  200

seq1  TGTATTCCCTCCCCCTCCCATATGAGACCTGTCACATGGTGTGACTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCCTCCCCCTCCCATATGAGACCTGTCACATGGTGTGACTGCAT  250

seq1  AGATCCAACAGTGACAGATTCCCCTGGAACAGACAGTTGTGAGCTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAACAGTGACAGATTCCCCTGGAACAGACAGTTGTGAGCTGCCAT  300

seq1  GTGGGTGCTGGGACTCGAACCCACATCCTCTGGTTCTAGAGATGGTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGCTGGGACTCGAACCCACATCCTCTGGTTCTAGAGATGGTCACT  350

seq1  GAGCCATCTCTCCAGCCCCTTGTTTTGTTTTTTATTTTTATTTTCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTCCAGCCCCTTGTTTTGTTTTTTATTTTTATTTTCTTTTT  400

seq1  TAAAAAAGAGATTTATCTATTTATAATATGTAGATACATTGTAGCAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAGATTTATCTATTTATAATATGTAGATACATTGTAGCAGCCT  450

seq1  TCAGACGCCTCAGAAGAGGGCATCAGAGTTCATTGGGAATGGTTGTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGCCTCAGAAGAGGGCATCAGAGTTCATTGGGAATGGTTGTGAGC  500

seq1  CACCCTGTGGTTGCTGGGATTTGAACTCAGGACCTTTAGAAGAGCAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTGGTTGCTGGGATTTGAACTCAGGACCTTTAGAAGAGCAGTCA  550

seq1  GTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCTGGCCTTGAACTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCTGGCCTTGAACTTTTT  600

seq1  TACACTTGAAGTTCTGGCTCAGCTCCTTAAGGGCTGAGATTACAGGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGAAGTTCTGGCTCAGCTCCTTAAGGGCTGAGATTACAGGCATG  650

seq1  TACCAACATATCCCTCTGGCTGTGAGTCTTCATCAATCTAGGTCACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACATATCCCTCTGGCTGTGAGTCTTCATCAATCTAGGTCACTTCT  700

seq1  CTCAGGTCCTCTGCAAGAGCAGCCAGTGTTCTTAGCCATCTTCCCAACCC  750
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTCTCTGCAAGAGCAGCCAGTGTTCTTAGCCATCTTCCCAACCC  750

seq1  CACCTCCTCTTTCCTGAGAAATGGTTTGGCTGTGTAGTCCAGGCTGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTCTTTCCTGAGAAATGGTTTGGCTGTGTAGTCCAGGCTGGCTT  800

seq1  CAAACTCAGGATAAC-CCTCAAACGCTGAAATTGTAGGAATGTAACACTT  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGGATAACTCCTCAAACGCTGAAATTGTAGGAATGTAACACTT  850

seq1  TATCCCTCTGTAGCGGGGCTTTCAGGGTCCTACTTGTGGTTTAATAATGA  899
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  TATCCCTCTGTAGCGGGGCTTTCATGGT-CTACTTGTGGTTTAATAATGA  899

seq1  ACTCGGAAACATCTATATAGTTTAAGGCTGTTGGCCTTTTTGCTGGGGCA  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTCGGAAACATCTATATAGTTTAAGGCTGTTGGCC-TTTTGCTGGGGCA  948

seq1  ATCTCTCAGCTAGCTTCTAACTTAACCTGACTTCTCTGCCATTGTGTCTC  999
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  ATCTCTCAGCTA-CTTCTAACTTAACCTGACTTCTCTGCCATTGTG-CTC  996

seq1  TTGGTGTGGCGC-TCTCGCTATTCTACTGTCCCTCTGCCCATCTCCTGCT  1048
       ||||||||||| |||||||||| |||||| |||||| ||||||||||||
seq2  -TGGTGTGGCGCTTCTCGCTATT-TACTGT-CCTCTG-CCATCTCCTGCT  1042

seq1  TTGCCCTGCAGTCCT------------GCCCCAGCTCC  1074
      |||||||||||||||            |||||||||||
seq2  TTGCCCTGCAGTCCTGGCTCAGGCTCAGCCCCAGCTCC  1080

seq1: chr5_124474691_124475204
seq2: B6Ng01-141M05.g_79_592 (reverse)

seq1  CCCCCCCCCCAAATCATCCCCCCACGCAGAGCAGACTCATCTCCATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCAAATCATCCCCCCACGCAGAGCAGACTCATCTCCATAAAT  50

seq1  GTCAAGGGCAGCCAACTGCAATGCTCCCTGGCTTAAATCCTGGAGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGGCAGCCAACTGCAATGCTCCCTGGCTTAAATCCTGGAGTGGCT  100

seq1  CTCCAGAGGATCAGGCCAAGCTCCTTACCCTGGTGGCCAGCAAGGCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGGATCAGGCCAAGCTCCTTACCCTGGTGGCCAGCAAGGCCATC  150

seq1  TGGTGCCACCCGCCCGCCTGCCTGCCTCTCTAGCATCAGCCTAGCACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCACCCGCCCGCCTGCCTGCCTCTCTAGCATCAGCCTAGCACTGG  200

seq1  TCCCTCAAGCATGTTACTATGTCACTGCGCCTTTGTAGCTCCAGAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAAGCATGTTACTATGTCACTGCGCCTTTGTAGCTCCAGAACCCT  250

seq1  GCGGGGAGTCTTTGTTCCTGCTGTCCACCCAGGCCCTAGAGCCCACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGAGTCTTTGTTCCTGCTGTCCACCCAGGCCCTAGAGCCCACTCCC  300

seq1  TTAGCTCCTGATGACCTATATCTCAGCCTCTGGATCCCAGCTCAGTCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCCTGATGACCTATATCTCAGCCTCTGGATCCCAGCTCAGTCACG  350

seq1  CTCAGCCAGGAAACACTCTGTGACCTTCCTCCATGCCCCAAAGGCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCAGGAAACACTCTGTGACCTTCCTCCATGCCCCAAAGGCTTCCT  400

seq1  CCATGACCCAAACACACTGGGTTTCCCCTGACTACAGTGTGTTTAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCCAAACACACTGGGTTTCCCCTGACTACAGTGTGTTTAAGTTC  450

seq1  CAGTACTGTGTGTACCAGCATGATCCTTGGGGCTGAGGGTCCAGTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGTGTGTACCAGCATGATCCTTGGGGCTGAGGGTCCAGTTTGGT  500

seq1  GGTAGAGAGCCTGT  514
      ||||||||||||||
seq2  GGTAGAGAGCCTGT  514