BAC Information

Click to search

BAC

Clone NameB6Ng01-141O23
Chromosome14 (Build37)5 (Build37)
Map Location 97,026,071 - 97,027,13618,084,511 - 18,084,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4921530L21Rik, Klhl1
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141O23.bB6Ng01-141O23.g
ACCDH940262DH940263
length1,065949
definitionDH940262|Mus musculus domesticus DNA, BAC clone: B6Ng01-141O23, 5' end.DH940263|Mus musculus domesticus DNA, BAC clone: B6Ng01-141O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,026,071 - 97,027,136)(18,084,511 - 18,084,575)
sequence
gaattctttctgttaatttttaaaccagaattgcagtcactagatgtgta
gatataaaattataaaaataaaatagaattaagatgtctggctcactttg
agtttaaatctttgacaattaataaaatattcccaaaggtcatctgcaaa
ttgctagtatctttatttatctaggttgagatgcaaatgacaggtgataa
ctcccttttgaatatctttttacaggttgtaacaatagtcccatataacc
tcactattgctgcaacagtaataaacccaatggcttgtaaaatatatgat
gtgatgaatattcataaagcaaattataatggaaatgcttccagaacttc
accttccttctgatgcattcccgtcacatagtactctctaagggatgggc
gattgtttgtttatttatttatttatttaatctatttaattttccgtatg
gaatatcagatttttcataagtttaccgaagcatggaagtgagtactgca
tactgaacagatagtgagtttgtctatgaagacttcagacagagtctcgt
gtatcaattgtgaaacatcatcttgtcttaggaatatctcactttttcat
aagagtaatagattcatcacctattacacatctatacaaccacctatgcc
ttgaataatcataactagtataggagtctatactgtatattgacacattg
gccatttggcctttgtaaaatgattttctatggatgacctttaaatatct
taagatttctatattttgtcaatattaggatactatattattttttaaaa
cctagaggatactgatatgtaacataatataattattaatattattattt
ctaaattcaaggtcagataaatcaaagtacgatcaagtgtggaatcaagt
atttcatatatgtgatgtttattcagtaatactgtcttcggtagctggca
cggatttcattgagataaaatatgtaatgggtctatttaatactacgttg
tgttttacgcctgttgaaaaaattaatggagaaatggtaataacaagcgt
gatcctcggaaatgt
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccggaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgctcctccttagatttgggaa
caaaacacccatggaaaggagttacagagacaaagttttggagctgagat
gaaaggatggaccatgtagagactgccatattccagggatccaccccata
atcagcatccaaacgctgacactattgcatacactagcaaggtttttatt
tgaaaggactccagatgtagcttgtctctttttgagactatgctgggggc
cttgcaaacacagaagtgggatgctcactgtcagctaatggatggatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_97026071_97027136
seq2: B6Ng01-141O23.b_48_1112 (reverse)

seq1  ACATTTCAG-GGATCACGCTTTGTAATTAACATTCCTCCTTAAATTTTTT  49
      ||||||| | ||||||||| |||| |||| |||| |||| | ||||||||
seq2  ACATTTCCGAGGATCACGC-TTGTTATTACCATTTCTCCATTAATTTTTT  49

seq1  C-ACAGACGTAAAACACAACTGTAGTA-TAAATAGACCAATTACATATTT  97
      | |||| ||||||||||||| |||||| |||||||||| |||||||||||
seq2  CAACAGGCGTAAAACACAAC-GTAGTATTAAATAGACCCATTACATATTT  98

seq1  TAATTCTCAATGGAATCCGTGCCAGCTACCGAAGACAGTATTACCTGAAT  147
      ||  |||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TA--TCTCAATGAAATCCGTGCCAGCTACCGAAGACAGTATTA-CTGAAT  145

seq1  AAACATCACATATATGAAATACTTGATTCCACACTTGATCGTACTTTGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCACATATATGAAATACTTGATTCCACACTTGATCGTACTTTGAT  195

seq1  TTATCTGACCTTGAATTTAGAAATAATAATATTAATAATTATATTATGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGACCTTGAATTTAGAAATAATAATATTAATAATTATATTATGTT  245

seq1  ACATATCAGTATCCTCTAGGTTTTAAAAAATAATATAGTATCCTAATATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAGTATCCTCTAGGTTTTAAAAAATAATATAGTATCCTAATATT  295

seq1  GAC-AAATATAGAAATCTTAAGATATTTAAAGGTCATCCATAGAAAATCA  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATATAGAAATCTTAAGATATTTAAAGGTCATCCATAGAAAATCA  345

seq1  TTTTACAAAGGCCAAATGGCCAATGTGTCAATATACAGTATAGACTCCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAGGCCAAATGGCCAATGTGTCAATATACAGTATAGACTCCTA  395

seq1  TACTAGTTATGATTATTCAAGGCATAGGTGGTTGTATAGATGTGTAATAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTTATGATTATTCAAGGCATAGGTGGTTGTATAGATGTGTAATAG  445

seq1  GTGATGAATCTATTACTCTTATGAAAAAGTGAGATATTCCTAAGACAAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAATCTATTACTCTTATGAAAAAGTGAGATATTCCTAAGACAAGA  495

seq1  TGATGTTTCACAATTGATACACGAGACTCTGTCTGAAGTCTTCATAGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTCACAATTGATACACGAGACTCTGTCTGAAGTCTTCATAGACA  545

seq1  AACTCACTATCTGTTCAGTATGCAGTACTCACTTCCATGCTTCGGTAAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTATCTGTTCAGTATGCAGTACTCACTTCCATGCTTCGGTAAAC  595

seq1  TTATGAAAAATCTGATATTCCATACGGAAAATTAAATAGATTAAATAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAAATCTGATATTCCATACGGAAAATTAAATAGATTAAATAAAT  645

seq1  AAATAAATAAACAAACAATCGCCCATCCCTTAGAGAGTACTATGTGACGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAACAAACAATCGCCCATCCCTTAGAGAGTACTATGTGACGG  695

seq1  GAATGCATCAGAAGGAAGGTGAAGTTCTGGAAGCATTTCCATTATAATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATCAGAAGGAAGGTGAAGTTCTGGAAGCATTTCCATTATAATTT  745

seq1  GCTTTATGAATATTCATCACATCATATATTTTACAAGCCATTGGGTTTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGAATATTCATCACATCATATATTTTACAAGCCATTGGGTTTAT  795

seq1  TACTGTTGCAGCAATAGTGAGGTTATATGGGACTATTGTTACAACCTGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGCAGCAATAGTGAGGTTATATGGGACTATTGTTACAACCTGTA  845

seq1  AAAAGATATTCAAAAGGGAGTTATCACCTGTCATTTGCATCTCAACCTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATTCAAAAGGGAGTTATCACCTGTCATTTGCATCTCAACCTAG  895

seq1  ATAAATAAAGATACTAGCAATTTGCAGATGACCTTTGGGAATATTTTATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGATACTAGCAATTTGCAGATGACCTTTGGGAATATTTTATT  945

seq1  AATTGTCAAAGATTTAAACTCAAAGTGAGCCAGACATCTTAATTCTATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCAAAGATTTAAACTCAAAGTGAGCCAGACATCTTAATTCTATTT  995

seq1  TATTTTTATAATTTTATATCTACACATCTAGTGACTGCAATTCTGGTTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATAATTTTATATCTACACATCTAGTGACTGCAATTCTGGTTTA  1045

seq1  AAAATTAACAGAAAGAATTC  1066
      ||||||||||||||||||||
seq2  AAAATTAACAGAAAGAATTC  1065

seq1: chr5_18084511_18084575
seq2: B6Ng01-141O23.g_385_449 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65