BAC Information

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BAC

Clone NameB6Ng01-142D01
Chromosome5 (Build37)
Map Location 60,431,318 - 60,613,250
singlet/doubletdoublet
Overlap genenone
Upstream geneEG625870, LOC100041425, LOC546866
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142D01.bB6Ng01-142D01.g
ACCDH940450DH940451
length1,1571,183
definitionDH940450|Mus musculus domesticus DNA, BAC clone: B6Ng01-142D01, 5' end.DH940451|Mus musculus domesticus DNA, BAC clone: B6Ng01-142D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,612,068 - 60,613,250)(60,431,318 - 60,432,515)
sequence
gaattctttccaagtttactaatgaagggtgcatttctgttatggtccag
cttgtgcataagatacaaaatcaagaaatctatttattatacatgcacgg
tctagaaaatcccattctatatgtccacagttgttttctatggaagttaa
catactttctaacgaatataaattctacttcacatggcagaacttcaaaa
ctgccatgttgtgtgggagtgaggcttgttttatgagtattgatctcatg
cacaaaagatgagacctcaaatcataattacaaatgaaatattaatatga
ttttgggaagagagtcaaaaacacctacctacatatttttctaagtatac
ataacctatttgatatatgcatcacctacaatgctttatttatcagtagt
taacaacataaaattatctgttacaacaatataattaaccacacttttat
aatctcaaagctattgttgcttgacattaacttctagaaaaggaaagtta
caattttttttccagttaatctaaaactttcatgatgttaaaacacagat
ttaaactttagtgttttgaagagaactacggctttatttgttctcatagt
gatgtgattaatttcttaacatgtaaaattattttcagtttgatagttca
ttttattgggggcacaaaacagcaaatattactctttctagatgatagat
tgatttggatattcaaaagatgttccttaaggtcaatgtttgacttttga
tgagaacctacaatcaaaagtcctcatttcctaattgaatgtgataacag
taaaacaatatcacaatgatactggaaaggaatggaaattgtcaccaggc
agtagtggtgcatgcctttaattccagcacttgggaggcagaggcaggca
gatttctgagtttgaggccagcctggaactacagagtgagttccatgaca
tccaggctatacagagaaaccctctctcaaaacaaaacaaaacaaacaaa
cacaaacaaacaacaacaaacaaagaatggaaattgtccaaaatcaagta
gaaaatatattttctgaaactgctactggcagttgtagaatacatgcatt
tttcattacaaacaaaacagagtttatcagcgagataataggaattagag
aatcttt
gaattcttggagatggagcatacaaaattgataggaatagaagaaaaaaa
gatgaatagaaagacagactagaatataaacctcgttggacactttttaa
attttttaatagatattttcttcatttacatttcaaatgctatcccaaaa
atcccatatacaccccctgctcccctacccacaccctcccacttcttgga
tctgacattttcctgtactggggcatataaagtttgcaagactaaggggc
ctctcttcccattgatggccgactaggccatcttttgctacatatgcagc
tagagacacaagctctggggtactggttagttcatattgttgttccacct
atagggttgcagaccccttcagctccttgggtgctctatctagctcctcc
attgggggccctgtattccatcctatagatgactgtgagcatccacttct
gtatttgccaggcactgtcatagtctcacaagagacagctatatcaaggt
cctttcagcataatcttgttggcatatgcaatagtgtctgcttttggtgg
ctgattatgggatggaccctcattggacattttaagtaaacaaaacagtg
atataaacctatattttagttttattttgtaaatgtatagtctaattgaa
tttggacagataactcctacaattaagcattttgctggaacacaatattt
tgcatttaagagtacaataattaatataaatactcgaagtctaaaagctc
atacctatttttagtagatatgcattttataatagcttaaaataatatac
tgtaaaggaaataggcctacagccttatttacttcacccatgtatataaa
aatatatgcatactcactgatttccccaaaatattatgagatcaaaaatt
cgattttgcccattttatactaaaacttagtatcacctacataaatcatt
taaaaaaataaatgcagatattatgaaacattgtcctcaaagttaagtat
cagtaaattatcattctttgtattaaagaagaatttttaactgaagacag
ttagatagaccaaattcctcagggtttgattgaggagaattcctacaaga
taagatggaggcgtaaaaatacctctctgggtggaactttatatgttgtg
aattcatcattgccgtagatggatactatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60612068_60613250
seq2: B6Ng01-142D01.b_40_1196 (reverse)

seq1  AAAGAATTCTCTATATTCTCTATTTAATCTCGCTGATAAATTTCTTGTTT  50
      |||| |||||||| |||| |||||  ||||||||||||||   ||   ||
seq2  AAAG-ATTCTCTA-ATTC-CTATT--ATCTCGCTGATAAA---CTCTGTT  42

seq1  TTGTTTGTAAAATGAAAAATGCATGTATTCTAACCAAACTGGCCAGTAAG  100
      ||||||||  ||||||||||||||||||||||    |||| |||||| ||
seq2  TTGTTTGT--AATGAAAAATGCATGTATTCTA---CAACT-GCCAGT-AG  85

seq1  CAGTTTCAG-AAATATATTTTCTTACTTTGATTTTTGGACAATTTCCATT  149
      ||||||||| |||||||||||| ||| |||| ||||||||||||||||||
seq2  CAGTTTCAGAAAATATATTTTC-TAC-TTGA-TTTTGGACAATTTCCATT  132

seq1  TCTTTTGTTTGTTTGTTTGTTTGTTTTGTGTTTTGTTTTGTTTTGTTTTG  199
         ||||||||||   ||||||| |||||||||   ||||||||||||||
seq2  --CTTTGTTTGTT--GTTGTTTG-TTTGTGTTT--GTTTGTTTTGTTTTG  175

seq1  TTTTTGAGAGAGGGTTTCTCTGTATAGCCCTGGATGTCATGGAACTCACT  249
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -TTTTGAGAGAGGGTTTCTCTGTATAG-CCTGGATGTCATGGAACTCACT  223

seq1  CTGTAGTTCCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTCCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTC  273

seq1  CCAAGTGCTGGAATTAAAGGCATGCACCACTACTGCCTGGTGACAATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGAATTAAAGGCATGCACCACTACTGCCTGGTGACAATTTC  323

seq1  CATTCCTTTCCAGTATCATTGTGATATTGTTTTACTGTTATCACATTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTCCAGTATCATTGTGATATTGTTTTACTGTTATCACATTCAA  373

seq1  TTAGGAAATGAGGACTTTTGATTGTAGGTTCTCATCAAAAGTCAAACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATGAGGACTTTTGATTGTAGGTTCTCATCAAAAGTCAAACATT  423

seq1  GACCTTAAGGAACATCTTTTGAATATCCAAATCAATCTATCATCTAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAAGGAACATCTTTTGAATATCCAAATCAATCTATCATCTAGAAA  473

seq1  GAGTAATATTTGCTGTTTTGTGCCCCCAATAAAATGAACTATCAAACTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATATTTGCTGTTTTGTGCCCCCAATAAAATGAACTATCAAACTGA  523

seq1  AAATAATTTTACATGTTAAGAAATTAATCACATCACTATGAGAACAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTACATGTTAAGAAATTAATCACATCACTATGAGAACAAATA  573

seq1  AAGCCGTAGTTCTCTTCAAAACACTAAAGTTTAAATCTGTGTTTTAACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTAGTTCTCTTCAAAACACTAAAGTTTAAATCTGTGTTTTAACAT  623

seq1  CATGAAAGTTTTAGATTAACTGGAAAAAAAATTGTAACTTTCCTTTTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTTTTAGATTAACTGGAAAAAAAATTGTAACTTTCCTTTTCTA  673

seq1  GAAGTTAATGTCAAGCAACAATAGCTTTGAGATTATAAAAGTGTGGTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAATGTCAAGCAACAATAGCTTTGAGATTATAAAAGTGTGGTTAA  723

seq1  TTATATTGTTGTAACAGATAATTTTATGTTGTTAACTACTGATAAATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGTTGTAACAGATAATTTTATGTTGTTAACTACTGATAAATAAA  773

seq1  GCATTGTAGGTGATGCATATATCAAATAGGTTATGTATACTTAGAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTAGGTGATGCATATATCAAATAGGTTATGTATACTTAGAAAAAT  823

seq1  ATGTAGGTAGGTGTTTTTGACTCTCTTCCCAAAATCATATTAATATTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTAGGTGTTTTTGACTCTCTTCCCAAAATCATATTAATATTTCA  873

seq1  TTTGTAATTATGATTTGAGGTCTCATCTTTTGTGCATGAGATCAATACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTATGATTTGAGGTCTCATCTTTTGTGCATGAGATCAATACTC  923

seq1  ATAAAACAAGCCTCACTCCCACACAACATGGCAGTTTTGAAGTTCTGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAAGCCTCACTCCCACACAACATGGCAGTTTTGAAGTTCTGCCA  973

seq1  TGTGAAGTAGAATTTATATTCGTTAGAAAGTATGTTAACTTCCATAGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTAGAATTTATATTCGTTAGAAAGTATGTTAACTTCCATAGAAA  1023

seq1  ACAACTGTGGACATATAGAATGGGATTTTCTAGACCGTGCATGTATAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTGGACATATAGAATGGGATTTTCTAGACCGTGCATGTATAATA  1073

seq1  AATAGATTTCTTGATTTTGTATCTTATGCACAAGCTGGACCATAACAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTTCTTGATTTTGTATCTTATGCACAAGCTGGACCATAACAGAA  1123

seq1  ATGCACCCTTCATTAGTAAACTTGGAAAGAATTC  1183
      ||||||||||||||||||||||||||||||||||
seq2  ATGCACCCTTCATTAGTAAACTTGGAAAGAATTC  1157

seq1: chr5_60431318_60432515
seq2: B6Ng01-142D01.g_67_1249

seq1  GAATTCTTGGAGATGGAGCATACAAAATTGATAGGAATAGAAGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGATGGAGCATACAAAATTGATAGGAATAGAAGAAAAAAA  50

seq1  GATGAATAGAAAGACAGACTAGAATATAAACCTCGTTGGACACTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAGAAAGACAGACTAGAATATAAACCTCGTTGGACACTTTTTAA  100

seq1  ATTTTTTAATAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAATAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAA  150

seq1  ATCCCATATACACCCCCTGCTCCCCTACCCACACCCTCCCACTTCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATATACACCCCCTGCTCCCCTACCCACACCCTCCCACTTCTTGGA  200

seq1  TCTGACATTTTCCTGTACTGGGGCATATAAAGTTTGCAAGACTAAGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATTTTCCTGTACTGGGGCATATAAAGTTTGCAAGACTAAGGGGC  250

seq1  CTCTCTTCCCATTGATGGCCGACTAGGCCATCTTTTGCTACATATGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCCATTGATGGCCGACTAGGCCATCTTTTGCTACATATGCAGC  300

seq1  TAGAGACACAAGCTCTGGGGTACTGGTTAGTTCATATTGTTGTTCCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACACAAGCTCTGGGGTACTGGTTAGTTCATATTGTTGTTCCACCT  350

seq1  ATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTGCTCTATCTAGCTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTGCTCTATCTAGCTCCTCC  400

seq1  ATTGGGGGCCCTGTATTCCATCCTATAGATGACTGTGAGCATCCACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGCCCTGTATTCCATCCTATAGATGACTGTGAGCATCCACTTCT  450

seq1  GTATTTGCCAGGCACTGTCATAGTCTCACAAGAGACAGCTATATCAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCCAGGCACTGTCATAGTCTCACAAGAGACAGCTATATCAAGGT  500

seq1  CCTTTCAGCATAATCTTGTTGGCATATGCAATAGTGTCTGCTTTTGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGCATAATCTTGTTGGCATATGCAATAGTGTCTGCTTTTGGTGG  550

seq1  CTGATTATGGGATGGACCCTCATTGGACATTTTAAGTAAACAAAACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATGGGATGGACCCTCATTGGACATTTTAAGTAAACAAAACAGTG  600

seq1  ATATAAACCTATATTTTAGTTTTATTTTGTAAATGTATAGTCTAATTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACCTATATTTTAGTTTTATTTTGTAAATGTATAGTCTAATTGAA  650

seq1  TTTGGACAGATAACTCCTACAATTAAGCATTTTGCTGGAACACAATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAGATAACTCCTACAATTAAGCATTTTGCTGGAACACAATATTT  700

seq1  TGCATTTAAGAGTACAATAATTAATATAAATACTCGAAGTCTAAAAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAAGAGTACAATAATTAATATAAATACTCGAAGTCTAAAAGCTC  750

seq1  ATACCTATTTTTAGTAGATATGCATTTTATAATAGCTTAAAATAATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATTTTTAGTAGATATGCATTTTATAATAGCTTAAAATAATATAC  800

seq1  TGTAAAGGAAATAGGCCTACAGCCTTATTTTACTTCACCCATGTATATAA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTAAAGGAAATAGGCCTACAGCCTTA-TTTACTTCACCCATGTATATAA  849

seq1  AAATATATGCATACTCACTGATTTCCCCAAAATATTATGAGATCAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATGCATACTCACTGATTTCCCCAAAATATTATGAGATCAAAAAT  899

seq1  TCGATTTTGCCCATTTTATACTAAAACTTAGTATCACCTACAATAAATCA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCGATTTTGCCCATTTTATACTAAAACTTAGTATCACCTAC-ATAAATCA  948

seq1  TTTAAAAAAATAAATGCAGATATTATGAAACAATTGTCCTCAAAAGTTAA  1000
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TTTAAAAAAATAAATGCAGATATTATGAAAC-ATTGTCCTC-AAAGTTAA  996

seq1  GTATCAGTAAAATTATCATTTCTTTGTATTAAAGAAGAAATTTATAACTT  1050
      |||||||| ||||||||| |||||||||||||||||| ||||| |||| |
seq2  GTATCAGT-AAATTATCA-TTCTTTGTATTAAAGAAG-AATTTTTAAC-T  1042

seq1  GAAGACAG-TAAATAGA-CAAAATCCTCAGGGTTTGAATGAAGGAGAAAT  1098
      |||||||| || ||||| |||| |||||||||||||| || ||||||| |
seq2  GAAGACAGTTAGATAGACCAAATTCCTCAGGGTTTGATTG-AGGAGAATT  1091

seq1  TCTACAAGATAAAGATGAAGGCGTACAAATATACTTCTCTGGGTTTGAAC  1148
       ||||||||| |||||| ||||||  ||| |||| |||||||| | ||||
seq2  CCTACAAGAT-AAGATGGAGGCGT--AAAAATACCTCTCTGGG-TGGAAC  1137

seq1  TTTA-ATGTTGTGAATTCAATCATTTGCGGTAGAAATGGATACATATTTG  1197
      |||| ||||||||||||| |||| |||| ||||  |||||||| ||||||
seq2  TTTATATGTTGTGAATTC-ATCA-TTGCCGTAG--ATGGATAC-TATTTG  1182

seq1  A  1198
      |
seq2  A  1183