BAC Information

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BAC

Clone NameB6Ng01-142E07
Chromosome5 (Build37)
Map Location 46,262,026 - 46,433,391
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142E07.bB6Ng01-142E07.g
ACCDH940506DH940507
length1,1381,115
definitionDH940506|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E07, 5' end.DH940507|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,262,026 - 46,263,175)(46,432,271 - 46,433,391)
sequence
gaattcactagacaaggctggagccgtaccataagtactaggcctgtaag
tgtaaaaatggcacaagcgtgattcttgacattttggactttaataaaag
ttatcagctgttccatataatttcctttattaattcacttaccataacct
taaacaagcacatttgatagtattttcatattagggagaaaaaatataaa
ttggtacagagaagttaaattcattgaccagcattatatagctagaggtg
aagttagaatttgaatctctgtcttttcaaatttaactattatttttcct
tagagaaaaggaaacaaacacataaacaacaacagaaaaggtggcaaaag
ctgcttagaaaggaattcagtccttctctggacaggcctgctcagcactc
ccaggtgagtgacgatttctttgtgcattttcaaaacacttccttcaaac
ttttcctcagttgctttagtcatattctttcatgcattaaaactatctgc
gggctggtgagataagagcacccaactgctcttctgaaggtccagagttc
aaatcccagcaaccacatggtggctcacaaccatccgtaacgatctgact
ttctcttctggagtgtctgaagacagctgtagtgtacttacatataataa
ataataaataaatcttttaaaaaaacccaactatatgaggacacattata
cattcaaccaccttgtagattgtgaattcaaagcctaaattcactaccct
tgtggttatcatttaagtccaaaatttcccttacaggttcacgttcttaa
tggttgatctgtagtatgtagtgctattttgaatactgtgaagattatat
gagttggggattatcacgcagaagttgtcactgaggtcaagtcagtggag
gtgtacctgctcctggtgttggcttgttttctctattccccgtctgccca
tccactaccaggtgaacaagtagccacagaacattaccacttcctggata
ctgccttgccttgttccctgctgtggaccatcgccatatgactccaagac
tggaataaacctttccatcctatttgctcctgtagattttgacacacatg
aagtaagtactactattttatctaattgcatctatacc
gaattcaattgaattgatgctttataaaaattaaaatcaaagtaaataga
ttttaaaaagcatgtcttatttactgttctgttgctctgaagagacacta
tgatcatagaaactgttataaaagaaagtatttaattgggagcttgctta
cagtttcagagggttagtccattaacatcatggagggaagcagacaggcg
tggtggtgctggagccatagccgagagctttgcaccctgaatcactggca
tcaggcaaggagggagagacagtgggcctggtaagagctttttgaaacct
caaagctcactcccagtaacaaaccttctccaaaaaggccacatctcctc
caacaaggctgtacctcctgatcctcccaaacaattccatgtcttagtga
ctaagtattcaaatatatgtgcctatgaggattattatcattcaaaccaa
cacagaaagcatcagtgctctggcttccatatgcctggaagattggaatg
gaatagaacatcacttcagttatatctccagcatctcttacattgacctt
ttagttgacaaccccttgctattcacgttctcattcttattcttcctctg
catctaatgcagtgtgctcttagttgatttgtccatctcctgtcccttcc
cttcttccttctagccttttcaaggctagcagtatattcttctggtcatg
cagtaccaatctgaaatctgaaatcagttcattagcattagcattatgaa
acattaattaagatctcctctataactatatcaaaagcctacacacacac
acacacacacacaccatgctgctaatatcctgtagagtctccttggccat
tgaggaatggctaaactatatctaaatgactagtgaaagaggcaagttat
aggaaaggcagaggagaagttatagtcacccagcttgcgagtgacttctg
gaaaaagcaatgttctaataaactgaagaggcacttgcatcctgtacctc
attcaaagaatcacagaggatcttggccaagaagtcatcaagactcttta
acatcttggcatctacctctcaaagtaacaccagtatctacgagctcagt
gagatagtggccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46262026_46263175
seq2: B6Ng01-142E07.b_46_1183

seq1  GAATTCACTAGACAAGGCTGGAGCCGTACCATAAGTACTAGGCCTGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGACAAGGCTGGAGCCGTACCATAAGTACTAGGCCTGTAAG  50

seq1  TGTAAAAATGGCACAAGCGTGATTCTTGACATTTTGGACTTTAATAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAATGGCACAAGCGTGATTCTTGACATTTTGGACTTTAATAAAAG  100

seq1  TTATCAGCTGTTCCATATAATTTCCTTTATTAATTCACTTACCATAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGCTGTTCCATATAATTTCCTTTATTAATTCACTTACCATAACCT  150

seq1  TAAACAAGCACATTTGATAGTATTTTCATATTAGGGAGAAAAAATATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGCACATTTGATAGTATTTTCATATTAGGGAGAAAAAATATAAA  200

seq1  TTGGTACAGAGAAGTTAAATTCATTGACCAGCATTATATAGCTAGAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACAGAGAAGTTAAATTCATTGACCAGCATTATATAGCTAGAGGTG  250

seq1  AAGTTAGAATTTGAATCTCTGTCTTTTCAAATTTAACTATTATTTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAATTTGAATCTCTGTCTTTTCAAATTTAACTATTATTTTTCCT  300

seq1  TAGAGAAAAGGAAACAAACACATAAACAACAACAGAAAAGGTGGCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAAGGAAACAAACACATAAACAACAACAGAAAAGGTGGCAAAAG  350

seq1  CTGCTTAGAAAGGAATTCAGTCCTTCTCTGGACAGGCCTGCTCAGCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAGAAAGGAATTCAGTCCTTCTCTGGACAGGCCTGCTCAGCACTC  400

seq1  CCAGGTGAGTGACGATTTCTTTGTGCATTTTCAAAACACTTCCTTCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAGTGACGATTTCTTTGTGCATTTTCAAAACACTTCCTTCAAAC  450

seq1  TTTTCCTCAGTTGCTTTAGTCATATTCTTTCATGCATTAAAACTATCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCAGTTGCTTTAGTCATATTCTTTCATGCATTAAAACTATCTGC  500

seq1  GGGCTGGTGAGATAAGAGCACCCAACTGCTCTTCTGAAGGTCCAGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTGAGATAAGAGCACCCAACTGCTCTTCTGAAGGTCCAGAGTTC  550

seq1  AAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGATCTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGATCTGACT  600

seq1  TTCTCTTCTGGAGTGTCTGAAGACAGCTGTAGTGTACTTACATATAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTGGAGTGTCTGAAGACAGCTGTAGTGTACTTACATATAATAA  650

seq1  ATAATAAATAAATCTTTTAAAAAAACCCAACTATATGAGGACACATTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAAATCTTTTAAAAAAACCCAACTATATGAGGACACATTATA  700

seq1  CATTCAACCACCTTGTAGATTGTGAATTCAAAGCCTAAATTCACTACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACCACCTTGTAGATTGTGAATTCAAAGCCTAAATTCACTACCCT  750

seq1  TGTGGTTATCATTTAAGTCCAAAATTTCCCTTACAGGTTCACGTTCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTATCATTTAAGTCCAAAATTTCCCTTACAGGTTCACGTTCTTAA  800

seq1  TGGTTGATCTGTAGTATGTAGTGCTATTTTGAATACTGTGAAGATTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATCTGTAGTATGTAGTGCTATTTTGAATACTGTGAAGATTATAT  850

seq1  GAGTTGGGGATTATCAGGCAGAAGTTGTCACTGAGGTCAAGTCAGTGGAG  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGTTGGGGATTATCACGCAGAAGTTGTCACTGAGGTCAAGTCAGTGGAG  900

seq1  GTTGTACCTGCTCCTGGTGTTGGCTTGTTTTCTCTATTCCCCGTCTGCCC  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TGTACCTGCTCCTGGTGTTGGCTTGTTTTCTCTATTCCCCGTCTGCCC  949

seq1  ATCCACTACCAGGTGAACAAGTAGCCACAGAACATTACCACTTCCTGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTACCAGGTGAACAAGTAGCCACAGAACATTACCACTTCCTGGAT  999

seq1  ACTGCCTTGCCTTGTTCCCTGCTGTGGACCATCGCCATATGACTCCAAGG  1050
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTGCCTTGCCTTGTTCCCTGCTGTGGACCATCGCCATATGACTCCAA-G  1048

seq1  ACTGAAATAAACCTTTCCATCCTCATATTGCTCCTGTTAGATATTTTGAC  1100
      |||| |||||||||||||||||| || ||||||||||   | ||||||||
seq2  ACTGGAATAAACCTTTCCATCCT-AT-TTGCTCCTGT---AGATTTTGAC  1093

seq1  ACACCAATGAGTAAAGTTACTACTATATTTATCTACATGCATCCTATACC  1150
      ||||  ||||   ||| ||||||||| ||||||||  ||||| |||||||
seq2  ACAC--ATGAAGTAAG-TACTACTAT-TTTATCTAATTGCAT-CTATACC  1138

seq1: chr5_46432271_46433391
seq2: B6Ng01-142E07.g_67_1181 (reverse)

seq1  CTTGGCCACTA-CTCACTTGAGCTCTGTAGATACTTGTGTTTACTTTGGA  49
      ||||||||||| ||||| ||||||| ||||||||| ||| ||||||| ||
seq2  CTTGGCCACTATCTCAC-TGAGCTC-GTAGATACTGGTG-TTACTTT-GA  46

seq1  GA-GTAGATGCCAAGATGTTCAAGAGTCCTGATGACTTCTTGGGCCAAGA  98
      || ||||||||||||||||| ||||||| |||||||||||| ||||||||
seq2  GAGGTAGATGCCAAGATGTTAAAGAGTCTTGATGACTTCTT-GGCCAAGA  95

seq1  TCCTCTGTGATTCTTTTGAATGAGGTACAGGATGCAAGTTGCCTCTTCAG  148
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TCCTCTGTGATTC-TTTGAATGAGGTACAGGATGCAAG-TGCCTCTTCAG  143

seq1  TTTA-TAGAACATTGCTTTTTCCAGAAGTCACCTCGCAAGCTGGGTGACT  197
      |||| |||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TTTATTAGAACATTGCTTTTTCCAGAAGTCA-CTCGCAAGCTGGGTGAC-  191

seq1  TATAACTTCTCCTCTGCCTTTCCTATAACTTGCCTCTTTCACTAGTCATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTCTCCTCTGCCTTTCCTATAACTTGCCTCTTTCACTAGTCATT  241

seq1  TAGATATAGTTTAGCCATTCCTCAATGGCCAAGGAGACTCTACAGGATAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAGTTTAGCCATTCCTCAATGGCCAAGGAGACTCTACAGGATAT  291

seq1  TAGCAGCATGGTGTGTGTGTGTGTGTGTGTGTGTAGGCTTTTGATATAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCATGGTGTGTGTGTGTGTGTGTGTGTGTAGGCTTTTGATATAGT  341

seq1  TATAGAGGAGATCTTAATTAATGTTTCATAATGCTAATGCTAATGAACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGAGATCTTAATTAATGTTTCATAATGCTAATGCTAATGAACTG  391

seq1  ATTTCAGATTTCAGATTGGTACTGCATGACCAGAAGAATATACTGCTAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGATTTCAGATTGGTACTGCATGACCAGAAGAATATACTGCTAGC  441

seq1  CTTGAAAAGGCTAGAAGGAAGAAGGGAAGGGACAGGAGATGGACAAATCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAGGCTAGAAGGAAGAAGGGAAGGGACAGGAGATGGACAAATCA  491

seq1  ACTAAGAGCACACTGCATTAGATGCAGAGGAAGAATAAGAATGAGAACGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGCACACTGCATTAGATGCAGAGGAAGAATAAGAATGAGAACGT  541

seq1  GAATAGCAAGGGGTTGTCAACTAAAAGGTCAATGTAAGAGATGCTGGAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCAAGGGGTTGTCAACTAAAAGGTCAATGTAAGAGATGCTGGAGA  591

seq1  TATAACTGAAGTGATGTTCTATTCCATTCCAATCTTCCAGGCATATGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGAAGTGATGTTCTATTCCATTCCAATCTTCCAGGCATATGGAA  641

seq1  GCCAGAGCACTGATGCTTTCTGTGTTGGTTTGAATGATAATAATCCTCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCACTGATGCTTTCTGTGTTGGTTTGAATGATAATAATCCTCAT  691

seq1  AGGCACATATATTTGAATACTTAGTCACTAAGACATGGAATTGTTTGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATATATTTGAATACTTAGTCACTAAGACATGGAATTGTTTGGGA  741

seq1  GGATCAGGAGGTACAGCCTTGTTGGAGGAGATGTGGCCTTTTTGGAGAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGGAGGTACAGCCTTGTTGGAGGAGATGTGGCCTTTTTGGAGAAG  791

seq1  GTTTGTTACTGGGAGTGAGCTTTGAGGTTTCAAAAAGCTCTTACCAGGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTACTGGGAGTGAGCTTTGAGGTTTCAAAAAGCTCTTACCAGGCC  841

seq1  CACTGTCTCTCCCTCCTTGCCTGATGCCAGTGATTCAGGGTGCAAAGCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTCTCCCTCCTTGCCTGATGCCAGTGATTCAGGGTGCAAAGCTC  891

seq1  TCGGCTATGGCTCCAGCACCACCACGCCTGTCTGCTTCCCTCCATGATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTATGGCTCCAGCACCACCACGCCTGTCTGCTTCCCTCCATGATGT  941

seq1  TAATGGACTAACCCTCTGAAACTGTAAGCAAGCTCCCAATTAAATACTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGACTAACCCTCTGAAACTGTAAGCAAGCTCCCAATTAAATACTTT  991

seq1  CTTTTATAACAGTTTCTATGATCATAGTGTCTCTTCAGAGCAACAGAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAACAGTTTCTATGATCATAGTGTCTCTTCAGAGCAACAGAACA  1041

seq1  GTAAATAAGACATGCTTTTTAAAATCTATTTACTTTGATTTTAATTTTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAGACATGCTTTTTAAAATCTATTTACTTTGATTTTAATTTTTA  1091

seq1  TAAAGCATCAATTCAATTGAATTC  1121
      ||||||||||||||||||||||||
seq2  TAAAGCATCAATTCAATTGAATTC  1115