BAC Information

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BAC

Clone NameB6Ng01-142O22
Chromosome5 (Build37)
Map Location 106,983,516 - 107,063,986
singlet/doubletdoublet
Overlap geneEG666892, LOC100042389, Zfp644
Upstream geneLrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2
Downstream geneLOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142O22.bB6Ng01-142O22.g
ACCDH941004DH941005
length1,1351,134
definitionDH941004|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O22, 5' end.DH941005|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,062,835 - 107,063,986)(106,983,516 - 106,984,671)
sequence
gaattctgcagtctctcctcacaagacccataaccagacagcaagaaaga
gatttgttcagaaatgtgttcttccattaaacgaagacagtccgttgatc
tatcagccacaaaaaatggacttgactgtgcactcaggtaaggacacttg
tgagtctttcaacacagttgagttgtgctttgtgaggtggaacatccatg
tggagtgccttctgagcatcttcctgttcaaactgctgcatggcagggca
cactggctctgctgtagctcattagaggatgcccagcagtactgagtctc
tgcctcattcttggtctgaatgtaagttgacaacaaaagcaaagcgtgtg
cacacgaccacacaaacacacacacttcccctacccctacagcaagccaa
ctgacctgtaaaagtcagcactgctgaggtggatatgggaggctcagggt
tagcagcagagcagtagtatcggaagacctctgacgtgtttctgccggtg
ctgccaagaactgagctgctggtgtccctctgcttaggcaaggcaaggca
aggcagtacagaacagctctagaccaaaggatggtacctgttgtgtgata
ctattaacccaagcaagagtctcctccctgaagccttattgtgttgtatt
gggtgactttagagaactgtagtgaatacgaatgttggtttggccttgtg
agtgtcacagttgtgctctactgcaacagagcaggtgcttggcttagtgc
tgctgctttctgttgaagggctgttttgaatgtcctgggaaatgatgtgg
cacgtagagaaatacttaggtattcttaggtctcgtctatactcaaacaa
tagaaaggtgtttgcttgtttgtttgttgttttgaggttaagaatgttaa
aggattatgtatttatgttgactgtgttcttagccaaatagaaattgatc
cgtgtataataaagatgaaatactgtaattctggttgcttcttgcagcac
tgaacatctcaacgtttgtattgcattttgatttggggaatgttagtagt
ctgaaaaaattgctttctcgattaaggattctgggtagtagggctctctc
atataccggtcttttgagtagtaggagtctttttt
gaattctttaagcacaagagaatggtggttttatttaaaaaaaaaaaagc
acaatatgaaagaaaactctccagcctcagatgcctaaatacgccatcaa
aagagtgctcagttctcaaacgccagcgctcctgatccctctagaactta
cactttatgtagaatatcaaagccagcgggatagtaggtgtcccaaaatg
tcttaattcagagaattagtgttaaccgagcctgattagctccatttatc
tctaattaattacctttatctaattagacactttgtttccagtagacatg
gagtcaagtagactagattattagtgtagtcattgtgcctttacaaaatc
ctgaaattaatgaaacgtgcaaaggaatctgcagttctaattgcacaggt
gttgccttatggcaaagctttatcatctgattacaccgaggggtcattag
tgacttttatatagaggatgagcctatgagatgtaccttagcaacagctc
attagttagggttcttactgtattatttattacttctaccttccccatta
cctagattgattcatggacctatatattctctcctctcctcagtgaaaaa
ataaataaaataaaataaaccatcattatgaagagtccagatgcaatgtt
gaaaaatgaagaactgcatttgttcataggctataatctgattctttaag
acaaaaactctaaagtcacatgtaatcagaatcaagtttatgggtatttc
ctatggaaaaggaaccaatttaaaatgactgagtaatgtggaaagattag
tgtatttgttttaaaccacacgtgactcagtgttctcacctaactgtgca
tcaaggtatgtggagaggaaaaaacaaatattattttgcattaaatataa
tggcattattctgtgtatcttctaaaataaattgatagacacatctctgt
atgtgtgcatcacaatattataaaatctgttttacatttttttgttttct
gatgagtttattctgatgacgatgaagagctacataaaggaaagtgcttt
tctcatgagaagtaaggtgtgtaaaatgaccaccacacctcagctttgat
ctgagatacttcctctcttttgaagaactgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107062835_107063986
seq2: B6Ng01-142O22.b_46_1180 (reverse)

seq1  AAAAAAGACTACTACTAACTTCAAAAGACCCGTTATATGGAAGAGAGCAC  50
      |||||||||| ||||||   |||||||| ||| ||||||  ||||||  |
seq2  AAAAAAGACTCCTACTA--CTCAAAAGA-CCGGTATATG--AGAGAG--C  43

seq1  CCTACTACCCAGAATCCTAAATCAGAGAAAGCATTTTTTTCAGACTACTA  100
      |||||||||||||||||| |||| ||||||||| ||||||||||||||||
seq2  CCTACTACCCAGAATCCTTAATC-GAGAAAGCAATTTTTTCAGACTACTA  92

seq1  ACATTCCCCCAAATCAAAATGGCAATACAAACGTTGAGATGTTCAGTGCT  150
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATT-CCCCAAATCAAAAT-GCAATACAAACGTTGAGATGTTCAGTGCT  140

seq1  TGCCAAGAAGCAAACCAGAATTACAGTAATTTCATCTTTTATTAATACAC  200
         |||||||| ||||||||||||||| |||||||| |||||| ||||||
seq2  --GCAAGAAGC-AACCAGAATTACAGT-ATTTCATC-TTTATT-ATACAC  184

seq1  GGATCAATTTCTATTTGGCTAAGAACACAGTCAACATAAATACATAAATC  250
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GGATCAATTTCTATTTGGCTAAGAACACAGTCAACATAAATACATAATCC  234

seq1  CTTAACATTCTTAACCTCAAAACAAACAAACAAACAAGCAAACACCCTTC  300
       |||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  TTTAACATTCTTAACCTCAAAAC-AACAAACAAACAAGCAAACACCTTTC  283

seq1  TATTGTTTGAGTATAGACGAGACCTAAGAATACCTAAGTATTTCTCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATTGTTTGAGTATAGACGAGACCTAAGAATACCTAAGTATTTCTCTACG  333

seq1  TGCCACATCATTTCCCAGGACATTCAAAACAGCCCTTCAACAGAAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATCATTTCCCAGGACATTCAAAACAGCCCTTCAACAGAAAGCAG  383

seq1  CAGCACTAAGCCAAGCACCTGCTCTGTTGCAGTAGAGCACAACTGTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTAAGCCAAGCACCTGCTCTGTTGCAGTAGAGCACAACTGTGACA  433

seq1  CTCACAAGGCCAAACCAACATTCGTATTCACTACAGTTCTCTAAAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGGCCAAACCAACATTCGTATTCACTACAGTTCTCTAAAGTCAC  483

seq1  CCAATACAACACAATAAGGCTTCAGGGAGGAGACTCTTGCTTGGGTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACAACACAATAAGGCTTCAGGGAGGAGACTCTTGCTTGGGTTAAT  533

seq1  AGTATCACACAACAGGTACCATCCTTTGGTCTAGAGCTGTTCTGTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACACAACAGGTACCATCCTTTGGTCTAGAGCTGTTCTGTACTGC  583

seq1  CTTGCCTTGCCTTGCCTAAGCAGAGGGACACCAGCAGCTCAGTTCTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTGCCTTGCCTAAGCAGAGGGACACCAGCAGCTCAGTTCTTGGC  633

seq1  AGCACCGGCAGAAACACGTCAGAGGTCTTCCGATACTACTGCTCTGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGGCAGAAACACGTCAGAGGTCTTCCGATACTACTGCTCTGCTGC  683

seq1  TAACCCTGAGCCTCCCATATCCACCTCAGCAGTGCTGACTTTTACAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGAGCCTCCCATATCCACCTCAGCAGTGCTGACTTTTACAGGTC  733

seq1  AGTTGGCTTGCTGTAGGGGTAGGGGAAGTGTGTGTGTTTGTGTGGTCGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTTGCTGTAGGGGTAGGGGAAGTGTGTGTGTTTGTGTGGTCGTG  783

seq1  TGCACACGCTTTGCTTTTGTTGTCAACTTACATTCAGACCAAGAATGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGCTTTGCTTTTGTTGTCAACTTACATTCAGACCAAGAATGAGG  833

seq1  CAGAGACTCAGTACTGCTGGGCATCCTCTAATGAGCTACAGCAGAGCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTCAGTACTGCTGGGCATCCTCTAATGAGCTACAGCAGAGCCAG  883

seq1  TGTGCCCTGCCATGCAGCAGTTTGAACAGGAAGATGCTCAGAAGGCACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGCCATGCAGCAGTTTGAACAGGAAGATGCTCAGAAGGCACTC  933

seq1  CACATGGATGTTCCACCTCACAAAGCACAACTCAACTGTGTTGAAAGACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGATGTTCCACCTCACAAAGCACAACTCAACTGTGTTGAAAGACT  983

seq1  CACAAGTGTCCTTACCTGAGTGCACAGTCAAGTCCATTTTTTGTGGCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGTCCTTACCTGAGTGCACAGTCAAGTCCATTTTTTGTGGCTGA  1033

seq1  TAGATCAACGGACTGTCTTCGTTTAATGGAAGAACACATTTCTGAACAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAACGGACTGTCTTCGTTTAATGGAAGAACACATTTCTGAACAAA  1083

seq1  TCTCTTTCTTGCTGTCTGGTTATGGGTCTTGTGAGGAGAGACTGCAGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTGCTGTCTGGTTATGGGTCTTGTGAGGAGAGACTGCAGAAT  1133

seq1  TC  1152
      ||
seq2  TC  1135

seq1: chr5_106983516_106984671
seq2: B6Ng01-142O22.g_69_1202

seq1  GAATTCTTTAAGCACAAGAGAATGGTGGTTTTATTTAAAAAAAAAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGCACAAGAGAATGGTGGTTTTATTTAAAAAAAAAAAAGC  50

seq1  ACAATATGAAAGAAAACTCTCCAGCCTCAGATGCCTAAATACGCCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGAAAGAAAACTCTCCAGCCTCAGATGCCTAAATACGCCATCAA  100

seq1  AAGAGTGCTCAGTTCTCAAACGCCAGCGCTCCTGATCCCTCTAGAACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGCTCAGTTCTCAAACGCCAGCGCTCCTGATCCCTCTAGAACTTA  150

seq1  CACTTTATGTAGAATATCAAAGCCAGCGGGATAGTAGGTGTCCCAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATGTAGAATATCAAAGCCAGCGGGATAGTAGGTGTCCCAAAATG  200

seq1  TCTTAATTCAGAGAATTAGTGTTAACCGAGCCTGATTAGCTCCATTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTCAGAGAATTAGTGTTAACCGAGCCTGATTAGCTCCATTTATC  250

seq1  TCTAATTAATTACCTTTATCTAATTAGACACTTTGTTTCCAGTAGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTAATTACCTTTATCTAATTAGACACTTTGTTTCCAGTAGACATG  300

seq1  GAGTCAAGTAGACTAGATTATTAGTGTAGTCATTGTGCCTTTACAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGTAGACTAGATTATTAGTGTAGTCATTGTGCCTTTACAAAATC  350

seq1  CTGAAATTAATGAAACGTGCAAAGGAATCTGCAGTTCTAATTGCACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAATGAAACGTGCAAAGGAATCTGCAGTTCTAATTGCACAGGT  400

seq1  GTTGCCTTATGGCAAAGCTTTATCATCTGATTACACCGAGGGGTCATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTATGGCAAAGCTTTATCATCTGATTACACCGAGGGGTCATTAG  450

seq1  TGACTTTTATATAGAGGATGAGCCTATGAGATGTACCTTAGCAACAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTATATAGAGGATGAGCCTATGAGATGTACCTTAGCAACAGCTC  500

seq1  ATTAGTTAGGGTTCTTACTGTATTATTTATTACTTCTACCTTCCCCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTAGGGTTCTTACTGTATTATTTATTACTTCTACCTTCCCCATTA  550

seq1  CCTAGATTGATTCATGGACCTATATATTCTCTCCTCTCCTCAGTGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTGATTCATGGACCTATATATTCTCTCCTCTCCTCAGTGAAAAA  600

seq1  ATAAATAAAATAAAATAAACCATCATTATGAAGAGTCCAGATGCAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAATAAAATAAACCATCATTATGAAGAGTCCAGATGCAATGTT  650

seq1  GAAAAATGAAGAACTGCATTTGTTCATAGGCTATAATCTGATTCTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAAGAACTGCATTTGTTCATAGGCTATAATCTGATTCTTTAAG  700

seq1  ACAAAAACTCTAAAGTCACATGTAATCAGAATCAAGTTTATGGGTATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTCTAAAGTCACATGTAATCAGAATCAAGTTTATGGGTATTTC  750

seq1  CTATGGAAAAGGAACCAATTTAAAATGACTGAGTAATGTGGAAAGATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAAAGGAACCAATTTAAAATGACTGAGTAATGTGGAAAGATTAG  800

seq1  TGTATTTGTTTTAAACCACACGTGACTCAGTGTTCTCACCTAACTGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTTTTAAACCACACGTGACTCAGTGTTCTCACCTAACTGTGCA  850

seq1  TCAAGGTATGTGGAGAGGAAAAAAACAAAATATTATTTTGCATTAAAATA  900
      ||||||||||||||||||||||||   ||||||||||||||||| |||||
seq2  TCAAGGTATGTGGAGAGGAAAAAA--CAAATATTATTTTGCATT-AAATA  897

seq1  TAATGGCATTTATTTTCTGTGTATCTTTCTAAAATAAATTGATAAGACAC  950
      |||||||||   | ||||||||||| ||||||||||||||||| ||||||
seq2  TAATGGCAT---TATTCTGTGTATC-TTCTAAAATAAATTGAT-AGACAC  942

seq1  ATTCTCTGTATGTGTGCATCACAATAATTATAAAAATCTGTTTTACATTT  1000
      | ||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  A-TCTCTGTATGTGTGCATCACAAT-ATTAT-AAAATCTGTTTTACATTT  989

seq1  TTTTG-TTTCTGATGAGTATA-TCTGATGACAGATGGAGGAAGCTAACCA  1048
      ||||| |||||||||||| || ||||||||| |||| ||  |||||  ||
seq2  TTTTGTTTTCTGATGAGTTTATTCTGATGAC-GATGAAG--AGCTA--CA  1034

seq1  TAAAAGGAAAGGTGCTTTTCTCATGGAGAAGTTAGGTGTGTACAAATGAC  1098
      | |||||||| ||||||||||||| ||||||| ||||||||| |||||||
seq2  T-AAAGGAAA-GTGCTTTTCTCAT-GAGAAGTAAGGTGTGTA-AAATGAC  1080

seq1  TACCACAACTCAGCTTTTGGATCTGAGTATCTTCCTCCTATTTGAAGAAA  1148
       |||||| |||||||||  ||||||||   |||||||   ||||||||| 
seq2  CACCACACCTCAGCTTT--GATCTGAGATACTTCCTCTCTTTTGAAGAA-  1127

seq1  CATGTTTT  1156
        ||||||
seq2  -CTGTTTT  1134