BAC Information

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BAC

Clone NameB6Ng01-143A14
Chromosome11 (Build37)5 (Build37)
Map Location 23,315,741 - 23,315,96420,449,636 - 20,450,250
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202
Downstream geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A14.bB6Ng01-143A14.g
ACCDH941081DH941082
length613615
definitionDH941081|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A14, 5' end.DH941082|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,315,741 - 23,315,964)(20,449,636 - 20,450,250)
sequence
gaattcactcctagtcactcccattctcagggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaatagcaggggctagacatatcatg
gttactaaagtttagggcaggtggggtgtgcagagctaagagtattgata
agggcatactagcagtgggagtttaataatgcccagcaattgtgccaaga
acgcaagctgaaaatgaacaactgtggggctggtgagatggctcagtggg
taagagcacccgactgctcttccgaaggtccagagttcaaatcccagcaa
ccacatggtggctcacaaccatctgtaatgagatctgactccctcttctg
gagtgtctgaagacagctacagtgtacttacatataataaataaatctta
aaaaaaaaaaaaaaaaaaaaaaaaagaaaatgaacaactgtgtgtgtgtg
tgtgtgtgtgtgt
gaattcaaggccagcctggtctacaaagtgagttccaggacagccagggc
tacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaa
aaaaaaaggaagttaagctcagtggttaagagcactggctgtttttcttc
agaggacccagttggtggctccaatgtctgtaattccagttcctgagatc
tacaacctcttctggcttctgtggtgccacgcacacacatggctcacaga
cctacatgcagaccaaacacccatacatattaaataaacaagtaaacatg
aagagtgcattaagcctctacactttcataaacaaggtcttcaaaacgtc
aggctcacatccttcccggaaccaccttgtgaaagataacactccccaca
tcataggtgcatatggactcttagccataaagaagacttaaatcatttgc
agaaaaatgaagacaaatagagataccataagtgaattatgccagtctta
aaaagacagacagggccatcactggaaagagaggcccattggacacgcaa
actttatatgccccagtacaggggaatgtcagggccaaaaagggggagtg
ggtgggtaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_23315741_23315964
seq2: B6Ng01-143A14.b_418_658 (reverse)

seq1  ACACACACACACACACACACACACA----------ATCTTTTTTTTTTTT  40
      |||||||||||||||||||||||||           ||||||||||||||
seq2  ACACACACACACACACACACACACAGTTGTTCATTTTCTTTTTTTTTTTT  50

seq1  TAAAGATTT--------ATTTATTTATTATATGTAAGTACATTGTAGCTG  82
      |     |||        |||||||||||||||||||||||| ||||||||
seq2  TTTTTTTTTTTTTTAAGATTTATTTATTATATGTAAGTACACTGTAGCTG  100

seq1  TCTTCAGACACACCAGAAGAGGGAGTCAGATCTCGTTACAGATAGTTGTG  132
      ||||||||||| |||||||||||||||||||||| |||||||| ||||||
seq2  TCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACAGATGGTTGTG  150

seq1  AGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAG  182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAG  200

seq1  TCGGGTGCTCTAACCCACTGAGCCATCTCACCAGCCCTCACA  224
      ||||||||||| ||||||||||||||||||||||||| ||||
seq2  TCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCC-CACA  241

seq1: chr5_20449636_20450250
seq2: B6Ng01-143A14.g_68_682

seq1  GAATTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGC  50

seq1  TACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAA  100

seq1  AAAAAAAGGAAGTTAAGCTCAGTGGTTAAGAGCACTGGCTGTTTTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGAAGTTAAGCTCAGTGGTTAAGAGCACTGGCTGTTTTTCTTC  150

seq1  AGAGGACCCAGTTGGTGGCTCCAATGTCTGTAATTCCAGTTCCTGAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCCAGTTGGTGGCTCCAATGTCTGTAATTCCAGTTCCTGAGATC  200

seq1  TACAACCTCTTCTGGCTTCTGTGGTGCCACGCACACACATGGCTCACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCTCTTCTGGCTTCTGTGGTGCCACGCACACACATGGCTCACAGA  250

seq1  CCTACATGCAGACCAAACACCCATACATATTAAATAAACAAGTAAACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGCAGACCAAACACCCATACATATTAAATAAACAAGTAAACATG  300

seq1  AAGAGTGCATTAAGCCTCTACACTTTCATAAACAAGGTCTTCAAAACGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGCATTAAGCCTCTACACTTTCATAAACAAGGTCTTCAAAACGTC  350

seq1  AGGCTCACATCCTTCCCGGAACCACCTTGTGAAAGATAACACTCCCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACATCCTTCCCGGAACCACCTTGTGAAAGATAACACTCCCCACA  400

seq1  TCATAGGTGCATATGGACTCTTAGCCATAAAGAAGACTTAAATCATTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGTGCATATGGACTCTTAGCCATAAAGAAGACTTAAATCATTTGC  450

seq1  AGAAAAATGAAGACAAATAGAGATACCATAAGTGAATTATGCCAGTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGAAGACAAATAGAGATACCATAAGTGAATTATGCCAGTCTTA  500

seq1  AAAAGACAGACAGGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGACAGGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAA  550

seq1  ACTTTATATGCCCCAGTACAGGGGAATGTCAGGGCCAAAAAGGGGGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATGCCCCAGTACAGGGGAATGTCAGGGCCAAAAAGGGGGAGTG  600

seq1  GGTGGGTAGGGGAGT  615
      |||||||||||||||
seq2  GGTGGGTAGGGGAGT  615