BAC Information

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BAC

Clone NameB6Ng01-143D11
Chromosome5 (Build37)
Map Location 51,054,089 - 51,134,310
singlet/doubletdoublet
Overlap geneLOC242987
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143D11.bB6Ng01-143D11.g
ACCDH941212DH941213
length1,1211,166
definitionDH941212|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D11, 5' end.DH941213|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,133,180 - 51,134,310)(51,054,089 - 51,055,287)
sequence
gaattccaaggtattcgctgccattaactcttgacagcactggcaatgtg
aatgcacactgaacaggaaaaaaatgtgatactgaaatgaatcgatatgc
ttaacatagagctgatgctgttgcagaagtgagatatccctcaaacactc
tgtctgtttgcccctccacatcaacattagcaaagaataccctggctgct
tttagatgtccactgtgcctcaagccatctcagagccctgtgccaattct
ctgtctctttcttatatctacggcttcctttctgcttcctggccagaatg
gaatggttggtacagtagagctaggccatcttcccactcttgcccaatct
cctctcactaatctatgatcagtgtacactatagatttagggcttcatcc
tccttaaatgctttagctgactccccagctttttgtttggcctaaaagga
ctcactaagagattttcaaacactttaattcttctctcaggccactgaaa
gttgcatattcttcttctctcctccattgaccacttctgcttcttctccc
tccatcatcgcactccctttcttgttttaccataacagttgtgtaatgaa
atcatccttttcctttgtccctgattgtgtgtgccactcccatctataga
atgtaaaattcagaagaaaacaaagtgcatattgcttcttgctttaacac
cagcacctttaatagtacctagctgccaatacttagaaaaataaaattat
ttttaataatgttcacacatgtgtgtgcatgtgtctgtgtgtgtgtgtat
gtgtgtgtgtgtgtgtatgcttattcaaagcatgactatcattcttccaa
tctcttctcatgagttttacctaacactttgcttagtattgctctaacta
gaaagtctacaccagctatttccttcttattgcaaaaaagtttcagaaga
caaaataaagttgctgacccaggagttattaacagtactgtgttcataga
caatagttttgagaaaacagagtgatctattactttagttcatgttgaaa
tttttatcatctaatttttctgatgtcaatgcagtgtagaagagaaggct
atgcctattgaaagaaagcta
gaattccatggattgactctgattgtctttgtagacattatctgttcaat
aattacacaggagctatgttttgatttttgtacttcttaagtgttgtact
ttccatgtctttctgtcttcaaacattgaagatattttttagaaaatttt
ttttccaagtacacatacagccatcatagaatacatgctttctctgataa
tttgtctttattgcaaagcgattctgcattgctgtgccattgcctttaca
atgaggtgcatagttgtcaatgctgccttctgtggtgtaagactgggcat
tcatcaaacgtccccagctaattactaatgaagtctaactagcagatgta
ctactttgacaccatgtttggcatgggaaattaattgcacattgtctaac
tttgacactaatagaggtgctattttttctgaataatgtacatgtgaagt
ttatagctcataggtagttaagttgatgactttcctgaattacatgtagt
gtatattttgtagcaaacttaattttattttagtagagcataagtaattt
actttattaacattatatacttaccctctgaaatgatcaggtaaaaattt
gatagaaattggaacttagaatacatcttagtatatcttagaatagattg
tggagagttgattttagcttccatttttaaaatgttgggattagaacacc
aatatttctttatccagtaataaaagtatgtttagaatttgcagagtaca
ttattcaggaattagtaaactaaaaacttcatttcccagcatcttagcaa
cgaattgtgatcaagcttccccttgttattgaccactgtactacatttat
caaaacatttacatacattaagcagaccatgcaaaggttatataacattt
tggttctaacaagaataatggaaaccacacacacacacacacatacatgc
acatacaaatacacacacatctaagacccagagatggaagtttctttttc
tctctctctctcttttctaaaaagacaatacatataatagatataatcat
acagctctattggctctggtatagcaaaaaccctgaaaatgaagatcgct
tggatgtaaggcgaacttatactcattgctatttgcctgcatgttaggga
acatatgccatttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51133180_51134310
seq2: B6Ng01-143D11.b_49_1169 (reverse)

seq1  TAGCTTTTCTCTCAATA-GCATAGCCCTTTCTCTTCTACACTGCATTGGA  49
      |||| ||||| |||||| ||||||||  ||||||||||||||||||| ||
seq2  TAGC-TTTCTTTCAATAGGCATAGCC--TTCTCTTCTACACTGCATT-GA  46

seq1  CATCAAGAAAAAATAGATGATAAAAATTTC-ACATGAACTAAAGTAATTA  98
      |||| ||||||| ||||||||||||||||| |||||||||||||||| ||
seq2  CATC-AGAAAAATTAGATGATAAAAATTTCAACATGAACTAAAGTAA-TA  94

seq1  GATTCACTCTGTTTTCTCAAAACTATTGTCTTATGAACACAGTACCTGTT  148
      || ||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GA-TCACTCTGTTTTCTCAAAACTATTGTC-TATGAACACAGTA-CTGTT  141

seq1  AATAACTCTTGGGTTCAGCATCTTTATTTTGTCTTCTGAAACTTTTTTTG  198
      |||||||| |||| |||||| ||||||||||||||||||||| |||||||
seq2  AATAACTCCTGGG-TCAGCAACTTTATTTTGTCTTCTGAAAC-TTTTTTG  189

seq1  CAATAAGAAGGAAATAGCTGGTGTTAGACTTTCTAGTTAGAGCAATACTA  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAATAAGAAGGAAATAGCTGGTG-TAGACTTTCTAGTTAGAGCAATACTA  238

seq1  AGCAAAGTGTTAGGTAAAACTCATGAGAAGAGATTGGAAGAATGATAGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTGTTAGGTAAAACTCATGAGAAGAGATTGGAAGAATGATAGTC  288

seq1  ATGCTTTGAATAAGCATACACACACACACACACATACACACACACACAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGAATAAGCATACACACACACACACACATACACACACACACAGA  338

seq1  CACATGCACACACATGTGTGAACATTATTAAAAATAATTTTATTTTTCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACACACATGTGTGAACATTATTAAAAATAATTTTATTTTTCTA  388

seq1  AGTATTGGCAGCTAGGTACTATTAAAGGTGCTGGTGTTAAAGCAAGAAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGCAGCTAGGTACTATTAAAGGTGCTGGTGTTAAAGCAAGAAGC  438

seq1  AATATGCACTTTGTTTTCTTCTGAATTTTACATTCTATAGATGGGAGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCACTTTGTTTTCTTCTGAATTTTACATTCTATAGATGGGAGTGG  488

seq1  CACACACAATCAGGGACAAAGGAAAAGGATGATTTCATTACACAACTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAATCAGGGACAAAGGAAAAGGATGATTTCATTACACAACTGTT  538

seq1  ATGGTAAAACAAGAAAGGGAGTGCGATGATGGAGGGAGAAGAAGCAGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAACAAGAAAGGGAGTGCGATGATGGAGGGAGAAGAAGCAGAAG  588

seq1  TGGTCAATGGAGGAGAGAAGAAGAATATGCAACTTTCAGTGGCCTGAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAATGGAGGAGAGAAGAAGAATATGCAACTTTCAGTGGCCTGAGAG  638

seq1  AAGAATTAAAGTGTTTGAAAATCTCTTAGTGAGTCCTTTTAGGCCAAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAAGTGTTTGAAAATCTCTTAGTGAGTCCTTTTAGGCCAAACA  688

seq1  AAAAGCTGGGGAGTCAGCTAAAGCATTTAAGGAGGATGAAGCCCTAAATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGGGGAGTCAGCTAAAGCATTTAAGGAGGATGAAGCCCTAAATC  738

seq1  TATAGTGTACACTGATCATAGATTAGTGAGAGGAGATTGGGCAAGAGTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTACACTGATCATAGATTAGTGAGAGGAGATTGGGCAAGAGTGG  788

seq1  GAAGATGGCCTAGCTCTACTGTACCAACCATTCCATTCTGGCCAGGAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGCCTAGCTCTACTGTACCAACCATTCCATTCTGGCCAGGAAGC  838

seq1  AGAAAGGAAGCCGTAGATATAAGAAAGAGACAGAGAATTGGCACAGGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGCCGTAGATATAAGAAAGAGACAGAGAATTGGCACAGGGCT  888

seq1  CTGAGATGGCTTGAGGCACAGTGGACATCTAAAAGCAGCCAGGGTATTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGGCTTGAGGCACAGTGGACATCTAAAAGCAGCCAGGGTATTCT  938

seq1  TTGCTAATGTTGATGTGGAGGGGCAAACAGACAGAGTGTTTGAGGGATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATGTTGATGTGGAGGGGCAAACAGACAGAGTGTTTGAGGGATAT  988

seq1  CTCACTTCTGCAACAGCATCAGCTCTATGTTAAGCATATCGATTCATTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCTGCAACAGCATCAGCTCTATGTTAAGCATATCGATTCATTTC  1038

seq1  AGTATCACATTTTTTTCCTGTTCAGTGTGCATTCACATTGCCAGTGCTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACATTTTTTTCCTGTTCAGTGTGCATTCACATTGCCAGTGCTGT  1088

seq1  CAAGAGTTAATGGCAGCGAATACCTTGGAATTC  1131
      |||||||||||||||||||||||||||||||||
seq2  CAAGAGTTAATGGCAGCGAATACCTTGGAATTC  1121

seq1: chr5_51054089_51055287
seq2: B6Ng01-143D11.g_68_1233

seq1  GAATTCCATGGATTGACTCTGATTGTCTTTGTAGACATTATCTGTTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGATTGACTCTGATTGTCTTTGTAGACATTATCTGTTCAAT  50

seq1  AATTACACAGGAGCTATGTTTTGATTTTTGTACTTCTTAAGTGTTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACAGGAGCTATGTTTTGATTTTTGTACTTCTTAAGTGTTGTACT  100

seq1  TTCCATGTCTTTCTGTCTTCAAACATTGAAGATATTTTTTAGAAAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTCTTTCTGTCTTCAAACATTGAAGATATTTTTTAGAAAATTTT  150

seq1  TTTTCCAAGTACACATACAGCCATCATAGAATACATGCTTTCTCTGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAGTACACATACAGCCATCATAGAATACATGCTTTCTCTGATAA  200

seq1  TTTGTCTTTATTGCAAAGCGATTCTGCATTGCTGTGCCATTGCCTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTATTGCAAAGCGATTCTGCATTGCTGTGCCATTGCCTTTACA  250

seq1  ATGAGGTGCATAGTTGTCAATGCTGCCTTCTGTGGTGTAAGACTGGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGCATAGTTGTCAATGCTGCCTTCTGTGGTGTAAGACTGGGCAT  300

seq1  TCATCAAACGTCCCCAGCTAATTACTAATGAAGTCTAACTAGCAGATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAACGTCCCCAGCTAATTACTAATGAAGTCTAACTAGCAGATGTA  350

seq1  CTACTTTGACACCATGTTTGGCATGGGAAATTAATTGCACATTGTCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGACACCATGTTTGGCATGGGAAATTAATTGCACATTGTCTAAC  400

seq1  TTTGACACTAATAGAGGTGCTATTTTTTCTGAATAATGTACATGTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACACTAATAGAGGTGCTATTTTTTCTGAATAATGTACATGTGAAGT  450

seq1  TTATAGCTCATAGGTAGTTAAGTTGATGACTTTCCTGAATTACATGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTCATAGGTAGTTAAGTTGATGACTTTCCTGAATTACATGTAGT  500

seq1  GTATATTTTGTAGCAAACTTAATTTTATTTTAGTAGAGCATAAGTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTTGTAGCAAACTTAATTTTATTTTAGTAGAGCATAAGTAATTT  550

seq1  ACTTTATTAACATTATATACTTACCCTCTGAAATGATCAGGTAAAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTAACATTATATACTTACCCTCTGAAATGATCAGGTAAAAATTT  600

seq1  GATAGAAATTGGAACTTAGAATACATCTTAGTATATCTTAGAATAGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAATTGGAACTTAGAATACATCTTAGTATATCTTAGAATAGATTG  650

seq1  TGGAGAGTTGATTTTAGCTTCCATTTTTAAAATGTTGGGATTAGAACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTGATTTTAGCTTCCATTTTTAAAATGTTGGGATTAGAACACC  700

seq1  AATATTTCTTTATCCAGTAATAAAAGTATGTTTAGAATTTGCAGAGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTTATCCAGTAATAAAAGTATGTTTAGAATTTGCAGAGTACA  750

seq1  TTATTCAGGAATTAGTAAACTAAAAACTTCATTTCCCAGCATCTTAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGGAATTAGTAAACTAAAAACTTCATTTCCCAGCATCTTAGCAA  800

seq1  CGAATTGTGATCAAGCTTCCCCTTGTTATTGACCACTGTACTACATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGTGATCAAGCTTCCCCTTGTTATTGACCACTGTACTACATTTAT  850

seq1  CAAAACATTTACATACATTAAGCAGACCATGCAAAGGTTATATAACATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAAACATTTACATACATTAAGCAGACCATGCAAAGGTTATATAACATTT  900

seq1  TGGTTCTAACAAGAATAATGGAAACCACACACACACACACACATACATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTAACAAGAATAATGGAAACCACACACACACACACACATACATGC  950

seq1  ACATACAAATACACACACATCTAAAGACCCAGAGATGGAAGTCTCTCTCT  1000
      |||||||||||||||||||||| ||||||||||||||||||| ||| | |
seq2  ACATACAAATACACACACATCT-AAGACCCAGAGATGGAAGTTTCTTTTT  999

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACA  1050
      ||||||||||||||     | |||     | | | ||| | ||| | | |
seq2  CTCTCTCTCTCTCT-----TTTCT-----AAAAAGACA-ATACATATA-A  1037

seq1  CACACACACACCATACAGCCCCTATTTGGCTTCCTGGTATAGGCAAAAAA  1100
       | | | | | ||||||| | ||| ||||||  |||||||||   |||||
seq2  TAGATATA-ATCATACAG-CTCTA-TTGGCT--CTGGTATAG--CAAAAA  1080

seq1  CCCTGAAAAAATGGAAAGATCGCTT-GATGTAAAGGCAGAACTTTTACTT  1149
      |||||  ||||||  |||||||||| ||||| ||||| |||||| |||| 
seq2  CCCTG--AAAATG--AAGATCGCTTGGATGT-AAGGC-GAACTTATACT-  1123

seq1  CCATTTGCTATTTCTGCATGGCATGTTAGGGACATAAATGCCATATTGAC  1199
       || ||||||||  ||| | |||||||||||| | | ||||||| |||||
seq2  -CA-TTGCTATT--TGCCT-GCATGTTAGGGA-ACATATGCCAT-TTGAC  1166