BAC Information

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BAC

Clone NameB6Ng01-143E10
Chromosome5 (Build37)
Map Location 135,502,749 - 135,643,176
singlet/doubletdoublet
Overlap geneStx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2
Upstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11
Downstream geneBcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143E10.bB6Ng01-143E10.g
ACCDH941255DH941256
length9121,012
definitionDH941255|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E10, 5' end.DH941256|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,502,749 - 135,503,669)(135,642,153 - 135,643,176)
sequence
gaattctgttcccatgaaaacacagagtgttcccagatcactggtcactt
ctgggtggggctagcatgacccagggatctactacaggcagtagaggata
ggtattgcaggggcagtcagagcaagccagcctgaaagtaagagatacat
gtgtggccctctgaaggcagagaccgggtgtgatcccagaggaggggccc
gtgatgggaatttagaccttcccccaaatgaacgatttcagcatcagacc
tgcagtgtctcctgatacgtatctgccatgctagctactcaggatgctgg
attgggaacatctcaaattcaaggtcagtctgaactacattgggagttca
agatcagcctcagcaacttaatgagagcctgtctcgaataaaaatgtaaa
ggagaagctaagagaacctgctttaggcgggtggtggtgacgcacgcctt
taatcccagaactcgggaggcagagacaggtggctatgagcttgaggcca
gcctggtctacagagtgagttccaggatagccagatctacacagagaaac
cctgtctcttttatctcctgggtaccaggcacacacgtggtacatatatg
tgagcaaaatatacacttaaattttaaaaaaactctttaaaaaaagttaa
aaatataagacctggggatgtagctcaagcctagaatcccccagggaggg
gctgggggcttggctcagtggtagagcccctgcctagaatcccccattga
ggggctgggggcgtggctcagtggtagagcacctgcctagaatcccccag
gtagggctgggggcgtggctcatggtagagccctgcctaaatccccaggg
aggggctgggggcgtggctcagtggtgagccttgctagatcccccagtga
ggggctgggggc
gaattccaggacaaccagggatatgcagaggttttctctggggggttgag
gaaggacaaaaagagaaaagaaagaggggagtgaaaagcagtgataacag
acccaatagaaggaggaggtgacccacagctgacgttgcatgcccagagg
gacttgtttgaatcaactttgaggtttacttgcagttccaggaaaaccaa
gagttcaaggtcatccttgactgcgtttaaagtttgaggccagtttaagg
ctgcatgagaccccgtcaaagaagagggagaggagtgtgtctcccagtga
ctgtgtaacttatcctgaacttggcgaagcttctgattcatgactctcag
ccttccagctgaacatgtttgctgggaaaggattcctaaacagcttctgc
agggggcgggggggaagggcccaggtaacaaatgcagggaaatgattact
gttgaaataactggatcaaactcaaatgacctaatacaagtgaacccagg
gcttacctaaacatgtcctacatcaaaggacacaatgaagaagatgttct
cactgctacggagatgaaaataaagaacaagaaaagaatgcaaggcaggc
caacagtgtgctaagcttcactgcttatgttcatggacacccgctccccg
aaccagcacaaatacaaggccaccccttgacagctatgttttaatttctc
tcaccacctaaatccaagccattgccagcaagaactccctctgctgttca
tgtttctctaccaccttcttaaatttaatttaaaagaaaaaatttttgag
gtaatgtcttcccatgtagcctggaaccaaacctgcccaacctgggttaa
atagcagaccctttctcaaacaggtaggatctagtggcatatacctgtaa
gcccagcactggggaaatttagctagagacagactcaagattaaagtcag
ccctgctacttgtggtttcagaccaacttgggttcaaagaccttgttttg
tgggcgtggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135502749_135503669
seq2: B6Ng01-143E10.b_48_959

seq1  GAATTCTGTTCCCATGAAAACACAGAGTGTTCCCAGATCACTGGTCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCCCATGAAAACACAGAGTGTTCCCAGATCACTGGTCACTT  50

seq1  CTGGGTGGGGCTAGCATGACCCAGGGATCTACTACAGGCAGTAGAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGGGCTAGCATGACCCAGGGATCTACTACAGGCAGTAGAGGATA  100

seq1  GGTATTGCAGGGGCAGTCAGAGCAAGCCAGCCTGAAAGTAAGAGATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGCAGGGGCAGTCAGAGCAAGCCAGCCTGAAAGTAAGAGATACAT  150

seq1  GTGTGGCCCTCTGAAGGCAGAGACCGGGTGTGATCCCAGAGGAGGGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCCTCTGAAGGCAGAGACCGGGTGTGATCCCAGAGGAGGGGCCC  200

seq1  GTGATGGGAATTTAGACCTTCCCCCAAATGAACGATTTCAGCATCAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGAATTTAGACCTTCCCCCAAATGAACGATTTCAGCATCAGACC  250

seq1  TGCAGTGTCTCCTGATACGTATCTGCCATGCTAGCTACTCAGGATGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTCTCCTGATACGTATCTGCCATGCTAGCTACTCAGGATGCTGG  300

seq1  ATTGGGAACATCTCAAATTCAAGGTCAGTCTGAACTACATTGGGAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAACATCTCAAATTCAAGGTCAGTCTGAACTACATTGGGAGTTCA  350

seq1  AGATCAGCCTCAGCAACTTAATGAGAGCCTGTCTCGAATAAAAATGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCCTCAGCAACTTAATGAGAGCCTGTCTCGAATAAAAATGTAAA  400

seq1  GGAGAAGCTAAGAGAACCTGCTTTAGGCGGGTGGTGGTGACGCACGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCTAAGAGAACCTGCTTTAGGCGGGTGGTGGTGACGCACGCCTT  450

seq1  TAATCCCAGAACTCGGGAGGCAGAGACAGGTGGCTATGAGCTTGAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGAACTCGGGAGGCAGAGACAGGTGGCTATGAGCTTGAGGCCA  500

seq1  GCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGATCTACACAGAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGATCTACACAGAGAAAC  550

seq1  CCTGTCTCTTTTATCTCCTGGGTACCAGGCACACACGTGGTACATATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTTTTATCTCCTGGGTACCAGGCACACACGTGGTACATATATG  600

seq1  TGAGCAAAATATACACTTAAATTTTAAAAAAACTCTTTAAAAAAAGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAATATACACTTAAATTTTAAAAAAACTCTTTAAAAAAAGTTAA  650

seq1  AAATATAAGACCTGGGGATGTAGCTCAAGCCTAGAATCCCCCAGGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGACCTGGGGATGTAGCTCAAGCCTAGAATCCCCCAGGGAGGG  700

seq1  GCTGGGGGCTTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGGCTTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCATTGA  750

seq1  GGGGCTGGGGGCGTGGCTCAGTGGTAGAGCACCTGCCTAGAATCCCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGGGGCGTGGCTCAGTGGTAGAGCACCTGCCTAGAATCCCCCAG  800

seq1  GTAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCC  850
      ||| ||||||||||||||||||| |||||||| ||||||||| ||| |||
seq2  GTA-GGGCTGGGGGCGTGGCTCA-TGGTAGAG-CCCTGCCTA-AAT-CCC  845

seq1  CAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCTTGCCTAGAATC  900
      ||||||||||||||||||||||||||||||| ||| ||||| |||| |||
seq2  CAGGGAGGGGCTGGGGGCGTGGCTCAGTGGT-GAG-CCTTG-CTAG-ATC  891

seq1  CCCCAGTGAGGGGCTGGGGGC  921
      |||||||||||||||||||||
seq2  CCCCAGTGAGGGGCTGGGGGC  912

seq1: chr5_135642153_135643176
seq2: B6Ng01-143E10.g_69_1079 (reverse)

seq1  CACCACGCCCAGCAAAACCAAGGTCTTATGGAGCCCAGGTTGGTCTTGAA  50
      ||||||||||| ||||| ||||||||  | || |||| ||||||| ||||
seq2  CACCACGCCCA-CAAAA-CAAGGTCT--TTGAACCCAAGTTGGTC-TGAA  45

seq1  ACCACAAGTAGCCAGGGCTGGCCTTAATCTTGAGTTCCTGTTCTTCTAGC  100
      ||||||||||| |||||||| | ||||||||||||  ||||   ||||| 
seq2  ACCACAAGTAG-CAGGGCTGACTTTAATCTTGAGT--CTGT--CTCTAG-  89

seq1  CTAAATTTCCCCAGTGCTGGGCTTACAGGTATATGCCACTAGATCCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTCCCCAGTGCTGGGCTTACAGGTATATGCCACTAGATCCTACC  139

seq1  TGTTTGAGAAAGGGTCTTGCTATTTAACCCAGGTTGGGCAGGTTTGGTTC  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTTTGAGAAAGGGTC-TGCTATTTAACCCAGGTTGGGCAGGTTTGGTTC  188

seq1  CAGGCTACATGGGAAGACATTACCTCAAAAATTTTTTTCTTTTAAATTAA  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGGCTACATGGGAAGACATTACCTCAAAAA-TTTTTTCTTTTAAATTAA  237

seq1  ATTTAAAGAAGGTGGTAGAGAAACATGAACAGCAGAGGGAGTTCTTGCTG  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTT-AAGAAGGTGGTAGAGAAACATGAACAGCAGAGGGAGTTCTTGCTG  286

seq1  GCAATGGCTTGGATTTAGGTGGTGAGAGAAATT-AAACATAGCTGTCAAG  349
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAATGGCTTGGATTTAGGTGGTGAGAGAAATTAAAACATAGCTGTCAAG  336

seq1  GGGTGGCCTTGTATTTGTGCTGGTTCGGGGAGCGGGTGTCCATGAACATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCCTTGTATTTGTGCTGGTTCGGGGAGCGGGTGTCCATGAACATA  386

seq1  AGCAGTGAAGCTTAGCACACTGTTGGCCTGCCTTGCATTCTTTTCTTGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAAGCTTAGCACACTGTTGGCCTGCCTTGCATTCTTTTCTTGTT  436

seq1  CTTTATTTTCATCTCCGTAGCAGTGAGAACATCTTCTTCATTGTGTCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTCATCTCCGTAGCAGTGAGAACATCTTCTTCATTGTGTCCTT  486

seq1  TGATGTAGGACATGTTTAGGTAAGCCCTGGGTTCACTTGTATTAGGTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAGGACATGTTTAGGTAAGCCCTGGGTTCACTTGTATTAGGTCAT  536

seq1  TTGAGTTTGATCCAGTTATTTCAACAGTAATCATTTCCCTGCATTTGTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTGATCCAGTTATTTCAACAGTAATCATTTCCCTGCATTTGTTA  586

seq1  CCTGGGCCCTTCCCCCCCGCCCCCTGCAGAAGCTGTTTAGGAATCCTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCCTTCCCCCCCGCCCCCTGCAGAAGCTGTTTAGGAATCCTTTC  636

seq1  CCAGCAAACATGTTCAGCTGGAAGGCTGAGAGTCATGAATCAGAAGCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAACATGTTCAGCTGGAAGGCTGAGAGTCATGAATCAGAAGCTTC  686

seq1  GCCAAGTTCAGGATAAGTTACACAGTCACTGGGAGACACACTCCTCTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTTCAGGATAAGTTACACAGTCACTGGGAGACACACTCCTCTCCC  736

seq1  TCTTCTTTGACGGGGTCTCATGCAGCCTTAAACTGGCCTCAAACTTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGACGGGGTCTCATGCAGCCTTAAACTGGCCTCAAACTTTAAA  786

seq1  CGCAGTCAAGGATGACCTTGAACTCTTGGTTTTCCTGGAACTGCAAGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCAAGGATGACCTTGAACTCTTGGTTTTCCTGGAACTGCAAGTAA  836

seq1  ACCTCAAAGTTGATTCAAACAAGTCCCTCTGGGCATGCAACGTCAGCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAAGTTGATTCAAACAAGTCCCTCTGGGCATGCAACGTCAGCTGT  886

seq1  GGGTCACCTCCTCCTTCTATTGGGTCTGTTATCACTGCTTTTCACTCCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCTCCTCCTTCTATTGGGTCTGTTATCACTGCTTTTCACTCCCC  936

seq1  TCTTTCTTTTCTCTTTTTGTCCTTCCTCAACCCCCCAGAGAAAACCTCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTCTCTTTTTGTCCTTCCTCAACCCCCCAGAGAAAACCTCTG  986

seq1  CATATCCCTGGTTGTCCTGGAATTC  1024
      |||||||||||||||||||||||||
seq2  CATATCCCTGGTTGTCCTGGAATTC  1011