BAC Information

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BAC

Clone NameB6Ng01-143E23
Chromosome5 (Build37)
Map Location 138,684,409 - 138,826,562
singlet/doubletdoublet
Overlap geneBC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454
Downstream gene2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143E23.bB6Ng01-143E23.g
ACCDH941281DH941282
length388746
definitionDH941281|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E23, 5' end.DH941282|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,826,178 - 138,826,562)(138,684,409 - 138,685,152)
sequence
ctgtatatgattctctctaagggctataagtgaaacctgcaaatatgcca
atcttgtgtacttattatttcatttttaatgttcttgttcaattgtgaca
ccaggttcagccaggagaataaagatagaatcaatccttatgtatacatg
ccttttggaaacggtcctagaaactgccttggcatgaggtttgctctcat
taacatgaagcttgctgttgtcaaaatcctccaaaacttttctgtgcagc
cctgtgaggatacagaggtaaggcagaatatattcttttttggattagtt
ttgttttttattcagatgtattttcataaacttggggatatatatatata
tatatatatatatatatatatatatatatatatatata
gaattcaaactcaggatcaaagccagggcttcatgaatgctaggcaagca
ctatcgcagctcagatgcatagccaaacacaggcagctctgtattttccc
atcattgatagcagtaggtttcctttttgccctttggtcactttctctct
gctttgaaggagccttttcagggttccagctttgtccttggaggatgagg
ctgaacaaacattcatgtggattgtctctgtggctcagagacaattgtct
ctgtggctcatcccatttcctggctgtccttttggttcccctgccctttt
cttgatgtgtggtggcagcagcagggcctaagcactgtgtgaagaatgca
gcactccacagctttgctatgtgtagtgtggttctcagcgtctcttctac
atagtgcttccaactgttggtttagagagagcttttgttgttgttcaact
gagttttttgtttgtttgtttgtttgttttagatagagcctcactgtgca
gagctagctggcctggaacatgcttgtgtgtagcaggctggtctcgaact
cctcacagagatctgctggcttctgccttatgagtgctgggcattaacaa
tgtgagccacagcagctggtgcttgtcttttccttttgaaacagtgtctt
ggctaacacagggtggcctccaacctgctatgtagccaaggatgggactt
gaaaatagtttaaagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138826178_138826562
seq2: B6Ng01-143E23.b_45_429 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATCCCCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATCCCCAAGT  50

seq1  TTATGAAAATACATCTGAATAAAAAACAAAACTAATCCAAAAAAGAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAATACATCTGAATAAAAAACAAAACTAATCCAAAAAAGAATAT  100

seq1  ATTCTGCCTTACCTCTGTATCCTCACAGGGCTGCACAGAAAAGTTTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTTACCTCTGTATCCTCACAGGGCTGCACAGAAAAGTTTTGGA  150

seq1  GGATTTTGACAACAGCAAGCTTCATGTTAATGAGAGCAAACCTCATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGACAACAGCAAGCTTCATGTTAATGAGAGCAAACCTCATGCCA  200

seq1  AGGCAGTTTCTAGGACCGTTTCCAAAAGGCATGTATACATAAGGATTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTTCTAGGACCGTTTCCAAAAGGCATGTATACATAAGGATTGAT  250

seq1  TCTATCTTTATTCTCCTGGCTGAACCTGGTGTCACAATTGAACAAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTTATTCTCCTGGCTGAACCTGGTGTCACAATTGAACAAGAACA  300

seq1  TTAAAAATGAAATAATAAGTACACAAGATTGGCATATTTGCAGGTTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGAAATAATAAGTACACAAGATTGGCATATTTGCAGGTTTCAC  350

seq1  TTATAGCCCTTAGAGAGAATCATATACAGGAATTC  385
      |||||||||||||||||||||||||||||||||||
seq2  TTATAGCCCTTAGAGAGAATCATATACAGGAATTC  385

seq1: chr5_138684409_138685152
seq2: B6Ng01-143E23.g_67_812

seq1  GAATTCAAACTCAGGATCAAAGCCAGGGCTTCATGAATGCTAGGCAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCAGGATCAAAGCCAGGGCTTCATGAATGCTAGGCAAGCA  50

seq1  CTATCGCAGCTCAGATGCATAGCCAAACACAGGCAGCTCTGTATTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGCAGCTCAGATGCATAGCCAAACACAGGCAGCTCTGTATTTTCCC  100

seq1  ATCATTGATAGCAGTAGGTTTCCTTTTTGCCCTTTGGTCACTTTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGATAGCAGTAGGTTTCCTTTTTGCCCTTTGGTCACTTTCTCTCT  150

seq1  GCTTTGAAGGAGCCTTTTCAGGGTTCCAGCTTTGTCCTTGGAGGATGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAGGAGCCTTTTCAGGGTTCCAGCTTTGTCCTTGGAGGATGAGG  200

seq1  CTGAACAAACATTCATGTGGATTGTCTCTGTGGCTCAGAGACAATTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAAACATTCATGTGGATTGTCTCTGTGGCTCAGAGACAATTGTCT  250

seq1  CTGTGGCTCATCCCATTTCCTGGCTGTCCTTTTGGTTCCCCTGCCCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCATCCCATTTCCTGGCTGTCCTTTTGGTTCCCCTGCCCTTTT  300

seq1  CTTGATGTGTGGTGGCAGCAGCAGGGCCTAAGCACTGTGTGAAGAATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTGTGGTGGCAGCAGCAGGGCCTAAGCACTGTGTGAAGAATGCA  350

seq1  GCACTCCACAGCTTTGCTATGTGTAGTGTGGTTCTCAGCGTCTCTTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCACAGCTTTGCTATGTGTAGTGTGGTTCTCAGCGTCTCTTCTAC  400

seq1  ATAGTGCTTCCAACTGTTGGTTTAGAGAGAGCTTTTGTTGTTGTTCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCTTCCAACTGTTGGTTTAGAGAGAGCTTTTGTTGTTGTTCAACT  450

seq1  GAGTTTTTTGTTTGTTTGTTTGTTTGTTTTAGATAGAGCCTCACTGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTTGTTTGTTTGTTTGTTTGTTTTAGATAGAGCCTCACTGTGCA  500

seq1  GAGCTAGCTGGCCTGGAACATGCTTGTGTGTAGCAGGCTGGTCTCGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGCTGGCCTGGAACATGCTTGTGTGTAGCAGGCTGGTCTCGAACT  550

seq1  CCTCACAGAGATCTGCTGGCTTCTGCCTTATGAGTGCT-GGCATTAACAA  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTCACAGAGATCTGCTGGCTTCTGCCTTATGAGTGCTGGGCATTAACAA  600

seq1  TGTGAGCCACAGCAGCTGGTGCTTGTCTTTTCCTTTTGAAACAGTGTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACAGCAGCTGGTGCTTGTCTTTTCCTTTTGAAACAGTGTCTT  650

seq1  GGCTAACACAGGGTGGCCTCCAACCTGCTATGTAGCCAAGGAT-GGACTT  698
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCTAACACAGGGTGGCCTCCAACCTGCTATGTAGCCAAGGATGGGACTT  700

seq1  GAAAATAGTTTAAAGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGTTTAAAGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  746