BAC Information

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BAC

Clone NameB6Ng01-143F01
Chromosome5 (Build37)
Map Location 57,139,331 - 57,262,752
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143F01.bB6Ng01-143F01.g
ACCDH941283DH941284
length991936
definitionDH941283|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F01, 5' end.DH941284|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,139,331 - 57,140,325)(57,261,814 - 57,262,752)
sequence
gaattctcaccagaggtatcacaaatggctgagaagaatttaaagaaatt
ttcaacctccttagtcatcacagaaatgcaaataaaatgaccttgagatt
ccaccttatagcaatttattgatattttcttaatattgttcaatgtttgt
acaaaaatttaatatgaaggaacaaaaggactgtcattgctctcattatt
ctatccataaatattcacagaataagaaaatgttgactgggcagtggtgg
cacaggcttttaatcccagcacttagaaggcagagtcaggcagatttctg
agtttgaggccagcctggtctacagaatgagttccaggacagccagggct
acacagagaaaccctgtctcagaaaaagaaaaaaaaaaaaaaaagacaaa
aaggaaaaaaagaaagaaaatgtgttttaaataaataactcatagtcaaa
aacttctattctgccatttaacagaattattactatctgtgtttctgtgt
taggaagtgattcacttttcaactattcatttctctaattattacaaatt
accctgctattcaaaagaatgaccatatattctacctaaaaaattattct
tacacaaacagttctatgtcttgattgatttgttcaaaactgtctatgac
actagtttatctgaggatatatatatatatatatatatatatatatatat
atatatagtgcatgagttattacatccatgtatccaattttctctaataa
agcaaaaatgttttttttcattttctcattttctaatatctgacaaaatt
tttcaaatcagtcacagatatcttataaaacacacattcacagtaatcag
ggataaaataattcttattttaattttcatcatttaagaatggttagtgg
ttaaaagaggcaaatggagaagtggcccaaaaatataataacctaatttt
aaaagattatggtttctccaaaaggatattggtcaaggtag
gaattcagtaaaaatactgtataaataatgttggcttaacaagaataatt
ttgtagtggaagaataatgatctatcttcaaatgtacatgatcttaaggc
aaatgttcttgtgataaggtaaaaagataaattaccaattaaatattaga
gggagattattattgcatttcaaatgagtgcttcctctcataaattcatt
tctaacttggcaagtcacttaacagaccataatgtgcttcattatgtgga
aatgctatttaattatagtgattcagaatctctgaaaggaagattttcct
tagagaaaaaccatgtgtaatgagctatctgaacaatcactttctgtata
ccagaatgcagatttcaaatgatctgcaggattaacagaaccgaacaaac
tgaatgacttagtgtatgtgaaaatattggtcagatttcaatactatgga
agcatttgtttgatgcttctcttactgcacatctcacacacacacacaca
cacacacacacacacacacctatcccctatccccctgcataatgtcagtg
cagcaacaatgccctttcaaccttccctacttaatggaagcttatgtttc
agcttttctccccttagtagattgtggttgggaatgttttctcctttccc
ttgggtccagggtatctgacagtgaacttagccttgggattctccatgaa
ttaaaacctcccctgaactctgctcagttctggttcaatttagccttaat
catcttactgccttctaaaatcttactcactaaaaacaggatccctcttc
tatggcatttggcattgctggttagtctttttttttttttgagtaaaacc
ataagagcagagaaaatacttgtgtttcattatattctagagatctgttg
cgctaaaaccaataaggaaacaatagtatcaatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57139331_57140325
seq2: B6Ng01-143F01.b_48_1038

seq1  GAATTCTCACCAGAGGTATCACAAATGGCTGAGAAGAATTTAAAGAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCAGAGGTATCACAAATGGCTGAGAAGAATTTAAAGAAATT  50

seq1  TTCAACCTCCTTAGTCATCACAGAAATGCAAATAAAATGACCTTGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTCCTTAGTCATCACAGAAATGCAAATAAAATGACCTTGAGATT  100

seq1  CCACCTTATAGCAATTTATTGATATTTTCTTAATATTGTTCAATGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTATAGCAATTTATTGATATTTTCTTAATATTGTTCAATGTTTGT  150

seq1  ACAAAAATTTAATATGAAGGAACAAAAGGACTGTCATTGCTCTCATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTTAATATGAAGGAACAAAAGGACTGTCATTGCTCTCATTATT  200

seq1  CTATCCATAAATATTCACAGAATAAGAAAATGTTGACTGGGCAGTGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCATAAATATTCACAGAATAAGAAAATGTTGACTGGGCAGTGGTGG  250

seq1  CACAGGCTTTTAATCCCAGCACTTAGAAGGCAGAGTCAGGCAGATTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTTTTAATCCCAGCACTTAGAAGGCAGAGTCAGGCAGATTTCTG  300

seq1  AGTTTGAGGCCAGCCTGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGCCAGCCTGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCT  350

seq1  ACACAGAGAAACCCTGTCTCAGAAAAAGAAAAAAAAAAAAAAAAAGACAA  400
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTCTCAGAAAAAG-AAAAAAAAAAAAAAAAGACAA  399

seq1  AAAGGAAAAAAAGAAAGAAAATGTGTTTTAAATAAATAACTCATAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAAAAGAAAGAAAATGTGTTTTAAATAAATAACTCATAGTCAA  449

seq1  AAACTTCTATTCTGCCATTTAACAGAATTATTACTATCTGTGTTTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTATTCTGCCATTTAACAGAATTATTACTATCTGTGTTTCTGTG  499

seq1  TTAGGAAGTGATTCACTTTTCAACTATTCATTTCTCTAATTATTACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGTGATTCACTTTTCAACTATTCATTTCTCTAATTATTACAAAT  549

seq1  TACCCTGCTATTCAAAAGAATGACCATATATTCTACCTAAAAAATTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGCTATTCAAAAGAATGACCATATATTCTACCTAAAAAATTATTC  599

seq1  TTACACAAACAGTTCTATGTCTTGATTGATTTGTTCAAAACTGTCTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAAACAGTTCTATGTCTTGATTGATTTGTTCAAAACTGTCTATGA  649

seq1  CACTAGTTTATCTGAGGATATATATATATATATATATATATATATATATA  700
      |||||||||||||||||    |||||||||||||||||||||||||||||
seq2  CACTAGTTTATCTGAGG----ATATATATATATATATATATATATATATA  695

seq1  TATATATATATAGTGCATGAGTTATTACATCCATGTATCCAATTTTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATAGTGCATGAGTTATTACATCCATGTATCCAATTTTCTCT  745

seq1  AATAAAGCAAAAATG-TTTTTTTCATTTTCTCATTTTCTAATATCTGACA  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAAAAATGTTTTTTTTCATTTTCTCATTTTCTAATATCTGACA  795

seq1  AAATTTTTCAAATCAGTCACAGATATCTTATAAAACACACATTCACAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCAAATCAGTCACAGATATCTTATAAAACACACATTCACAGTA  845

seq1  ATCA-GGATAAAAT-ATTCTTATTTTAAATTTTCATCA-TTAAGAATGGT  896
      |||| ||||||||| ||||||||||| ||||||||||| |||||||||||
seq2  ATCAGGGATAAAATAATTCTTATTTT-AATTTTCATCATTTAAGAATGGT  894

seq1  TAAGTGGTTAAAAGAGGCAAAT-GAGACAGTGGCCCAAAAATATAATAAC  945
      | |||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  T-AGTGGTTAAAAGAGGCAAATGGAGA-AGTGGCCCAAAAATATAATAAC  942

seq1  TAAATATTAAAAGATTATTGTTATCTCAAAAAGGATAATTGTCAAGGTAG  995
        ||| |||||||||||| ||| |||| ||||||||| | ||||||||||
seq2  CTAATTTTAAAAGATTATGGTT-TCTCCAAAAGGATATTGGTCAAGGTAG  991

seq1: chr5_57261814_57262752
seq2: B6Ng01-143F01.g_66_1001 (reverse)

seq1  GGTATTTGATACTATTGTTTCCCTTATTGG-TTTAGGCCAACAGTTCTCT  49
      |||| ||||||||||||||| ||||||||| |||||  |||||| |||||
seq2  GGTA-TTGATACTATTGTTT-CCTTATTGGTTTTAGCGCAACAGATCTCT  48

seq1  AGAATATTACTGAAACACAAGTATTTTCTCTGCTCTTATTGTTTTTACTC  99
      |||||| || |||||||||||||||||||||||||||| || ||||||||
seq2  AGAATA-TAATGAAACACAAGTATTTTCTCTGCTCTTA-TGGTTTTACTC  96

seq1  AAAAAAAAAAAAAGACTAAACAGCAATG-CAAATGCCATAGAAGAGGGAT  148
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  AAAAAAAAAAAAAGACTAACCAGCAATGCCAAATGCCATAGAAGAGGGAT  146

seq1  CCTGTTTTTAGTGAGTAAGATTTTAGAAGGCAGTAAGATGATTAAGGCTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTTAGTGAGTAAGATTTTAGAAGGCAGTAAGATGATTAAGGCTA  196

seq1  AATTGAACCAGAACTGAAGCAGAGTTCAGGGGAGGTTTTAATTCATGGAG  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATTGAACCAGAACTG-AGCAGAGTTCAGGGGAGGTTTTAATTCATGGAG  245

seq1  AATCCCAAGGCTAAGTTCACTGTCAGATACCCTGGACCCAAGGGAAAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAGGCTAAGTTCACTGTCAGATACCCTGGACCCAAGGGAAAGGA  295

seq1  GAAAACATTCCCAACCACAATCTACTAAGGGGAGAAAAGCTGAAACATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTCCCAACCACAATCTACTAAGGGGAGAAAAGCTGAAACATAA  345

seq1  GCTTCCATTAAGTAGGGAAGGTTGAAAGGGCATTGTTGCTGCACTGACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATTAAGTAGGGAAGGTTGAAAGGGCATTGTTGCTGCACTGACAT  395

seq1  TATGCAGGGGGATAGGGGATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGGGGGATAGGGGATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT  445

seq1  GTGTGTGAGATGTGCAGTAAGAGAAGCATCAAACAAATGCTTCCATAGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAGATGTGCAGTAAGAGAAGCATCAAACAAATGCTTCCATAGTA  495

seq1  TTGAAATCTGACCAATATTTTCACATACACTAAGTCATTCAGTTTGTTCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCTGACCAATATTTTCACATACACTAAGTCATTCAGTTTGTTCG  545

seq1  GTTCTGTTAATCCTGCAGATCATTTGAAATCTGCATTCTGGTATACAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTAATCCTGCAGATCATTTGAAATCTGCATTCTGGTATACAGAA  595

seq1  AGTGATTGTTCAGATAGCTCATTACACATGGTTTTTCTCTAAGGAAAATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGTTCAGATAGCTCATTACACATGGTTTTTCTCTAAGGAAAATC  645

seq1  TTCCTTTCAGAGATTCTGAATCACTATAATTAAATAGCATTTCCACATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCAGAGATTCTGAATCACTATAATTAAATAGCATTTCCACATAA  695

seq1  TGAAGCACATTATGGTCTGTTAAGTGACTTGCCAAGTTAGAAATGAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACATTATGGTCTGTTAAGTGACTTGCCAAGTTAGAAATGAATTT  745

seq1  ATGAGAGGAAGCACTCATTTGAAATGCAATAATAATCTCCCTCTAATATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGAAGCACTCATTTGAAATGCAATAATAATCTCCCTCTAATATT  795

seq1  TAATTGGTAATTTATCTTTTTACCTTATCACAAGAACATTTGCCTTAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTAATTTATCTTTTTACCTTATCACAAGAACATTTGCCTTAAGA  845

seq1  TCATGTACATTTGAAGATAGATCATTATTCTTCCACTACAAAATTATTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACATTTGAAGATAGATCATTATTCTTCCACTACAAAATTATTCT  895

seq1  TGTTAAGCCAACATTATTTATACAGTATTTTTACTGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCCAACATTATTTATACAGTATTTTTACTGAATTC  936