BAC Information

Click to search

BAC

Clone NameB6Ng01-143G21
Chromosome5 (Build37)
Map Location 82,716,847 - 82,717,904
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143G21.bB6Ng01-143G21.g
ACCDH941366DH941367
length7881,050
definitionDH941366|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G21, 5' end.DH941367|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttccttatatatgttggatattagtccc
ctatctgatttaggacaggtaaagatcctttcccaatatgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttggagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttccactgtgcccatatcttcaaggctttttcccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggtatggattgattcac
attcttctacgtgataacaaccagttgtgccagcaccatttgttgaaaat
tctgtttttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttctctgaggaaccgccagactgatttccacag
tggttgtacaagcttgcaatcccaccaacaatgaaggagtgttcctcttt
ctccacatcctccccagcaaaaaaatgggaatgggtgggtagggaagtgg
gggcgaggttatgggggacttttgggaatagctttggaaatgtattgagg
aaaaatttgaataaaaatatttttaaaaagcattcttataagggaaatat
gagtgtatagcattatatcgaaaatatatagagggaac

gaattcagatcagacatgagatccccatcagtcatgttgttgttcttttg
tttttgaattactgaaaattttggacagcaagaataaaatctcaaatatg
gccaaagggactgttcaccatgttgctagactttccggattacattgtgt
tacaggtaaagctctttgtgcagtcagtaaaggagttttttagagcctct
ataaataacaaaaccagaatgtttctgtatgagaattctgaaagcaatta
tctgtgattccacagcttatggtctcttccctgtaccatatatctctcca
cagaaaatactttatggaattcattattcttaattagatttgtgtattta
gcggaatgtctattttacttggatggaatttctgtgtgaagctacccaaa
gctgtcttgcccagtattttatctctgttcccagtatggtgtctggcaca
tcattaacaggctataaatatttgttgatgttacaaatgaaaataaatgg
attaatggtatcctagatataaagattagcttccagaagctgttagacca
ctacattattcagctctgacttttaaaagttctgcactttctgccaaaat
tgcaaacgtacattttataattaatgattgctcaagtttctttcaggttt
gtaggatatttctgtgtgcaacacacagccctattttgaaccatttcctg
ccattactatgctcattgatgactttctttattctaccttctaagtctac
attgttggcaaaccccagcccgaacactgtgcccattcttaaacagccat
ctgcatgtgcccaggaaaaatagcaaagaacagaaaaaaccctgtcaagc
tcttatcctttgccaatttctttattcactctactgtgcactctgagtgc
tatataagtgggtattctgatagcttcacttcttctcaatagtgtgtctt
tagagaggcagaaagaacagaggcgcagaaaaaaagaaaacagcaggctg
tcaggacaaaacgctggatgatatatatggttaatgatgcatgctggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82716847_82717904
seq2: B6Ng01-143G21.g_67_1116

seq1  GAATTCAGATCAGACATGAGATCCCCATCAGTCATGTTGTTGTTCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCAGACATGAGATCCCCATCAGTCATGTTGTTGTTCTTTTG  50

seq1  TTTTTGAATTACTGAAAATTTTGGACAGCAAGAATAAAATCTCAAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAATTACTGAAAATTTTGGACAGCAAGAATAAAATCTCAAATATG  100

seq1  GCCAAAGGGACTGTTCACCATGTTGCTAGACTTTCCGGATTACATTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGGACTGTTCACCATGTTGCTAGACTTTCCGGATTACATTGTGT  150

seq1  TACAGGTAAAGCTCTTTGTGCAGTCAGTAAAGGAGTTTTTTAGAGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAAAGCTCTTTGTGCAGTCAGTAAAGGAGTTTTTTAGAGCCTCT  200

seq1  ATAAATAACAAAACCAGAATGTTTCTGTATGAGAATTCTGAAAGCAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAACAAAACCAGAATGTTTCTGTATGAGAATTCTGAAAGCAATTA  250

seq1  TCTGTGATTCCACAGCTTATGGTCTCTTCCCTGTACCATATATCTCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATTCCACAGCTTATGGTCTCTTCCCTGTACCATATATCTCTCCA  300

seq1  CAGAAAATACTTTATGGAATTCATTATTCTTAATTAGATTTGTGTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATACTTTATGGAATTCATTATTCTTAATTAGATTTGTGTATTTA  350

seq1  GCGGAATGTCTATTTTACTTGGATGGAATTTCTGTGTGAAGCTACCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAATGTCTATTTTACTTGGATGGAATTTCTGTGTGAAGCTACCCAAA  400

seq1  GCTGTCTTGCCCAGTATTTTATCTCTGTTCCCAGTATGGTGTCTGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTGCCCAGTATTTTATCTCTGTTCCCAGTATGGTGTCTGGCACA  450

seq1  TCATTAACAGGCTATAAATATTTGTTGATGTTACAAATGAAAATAAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACAGGCTATAAATATTTGTTGATGTTACAAATGAAAATAAATGG  500

seq1  ATTAATGGTATCCTAGATATAAAGATTAGCTTCCAGAAGCTGTTAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGTATCCTAGATATAAAGATTAGCTTCCAGAAGCTGTTAGACCA  550

seq1  CTACATTATTCAGCTCTGACTTTTAAAAGTTCTGCACTTTCTGCCAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTATTCAGCTCTGACTTTTAAAAGTTCTGCACTTTCTGCCAAAAT  600

seq1  TGCAAACGTACATTTTATAATTAATGATTGCTCAAGTTTCTTTCAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACGTACATTTTATAATTAATGATTGCTCAAGTTTCTTTCAGGTTT  650

seq1  GTAGGATATTTCTGTGTGCAACACACAGCCCTATTTTGAACCATTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATATTTCTGTGTGCAACACACAGCCCTATTTTGAACCATTTCCTG  700

seq1  CCATTACTATGCTCATTGATGACTTTCTTTATTCTACCTTCTAAGTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACTATGCTCATTGATGACTTTCTTTATTCTACCTTCTAAGTCTAC  750

seq1  ATTGTTGGCAAACCCCAGCCCGAACACTGTGCCCATTCTTAAACAGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGCAAACCCCAGCCCGAACACTGTGCCCATTCTTAAACAGCCAT  800

seq1  CTGCATGTGCCCAGGAAAAATAGCAAAGAACAGAAAAAACCCTGTCAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCCCAGGAAAAATAGCAAAGAACAGAAAAAACCCTGTCAAGC  850

seq1  TCTTATCCTTTGCCAATTTCTTTATTCAACTCTACTGTGCACTCTGAGTG  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTATCCTTTGCCAATTTCTTTATTC-ACTCTACTGTGCACTCTGAGTG  899

seq1  CTAATATAAAGTGGGTATTCTGATAGCTTCACTTCTTCTCAATAGTGTGT  950
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CT-ATAT-AAGTGGGTATTCTGATAGCTTCACTTCTTCTCAATAGTGTGT  947

seq1  CTTTAAGAGAGGCAGAAAGAACAGAGGCGCAGAAAAAAAGAAAACAGCCA  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||  
seq2  CTTT-AGAGAGGCAGAAAGAACAGAGGCGCAGAAAAAAAGAAAACAGC--  994

seq1  GGGCTGTCAGGACAAAACGCTGAATTGATATATATTGTTATATGATGCAT  1050
       ||||||||||||||||||||| | |||||||||| |||| |||||||||
seq2  AGGCTGTCAGGACAAAACGCTGGA-TGATATATATGGTTA-ATGATGCAT  1042

seq1  GCTGGTAA  1058
      ||||||||
seq2  GCTGGTAA  1050


| Home | SequenceCutter | Blast | Download |