BAC Information

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BAC

Clone NameB6Ng01-143M16
Chromosome5 (Build37)
Map Location 89,536,062 - 89,537,103
singlet/doubletsinglet
Overlap geneSlc4a4
Upstream geneSmr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143M16.bB6Ng01-143M16.g
ACCDH941635DH941636
length1051,020
definitionDH941635|Mus musculus domesticus DNA, BAC clone: B6Ng01-143M16, 5' end.DH941636|Mus musculus domesticus DNA, BAC clone: B6Ng01-143M16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aagacaaaaaggaagagcaggagtgtgaaaaagggcatggggaggaagag
gtaaagaggagaaggactgggacgagcagcaggaggaggagggggggcag
gggga
gaattcaattaaagttgcatacatgaacacactttaaaattactaagagc
taaattcgtgtttaaccgtgttatgggttttttttttttaactttctttt
ttataatagacacaaaatgtggcttagagatttagattcttaaaggaagt
cattgcttgaaatttcatcctccttaggaaattagccccacttactgtta
tatttagcttgatggcaattcgcaaacatgctgcttggtgggctcatttg
cattaatgccggtgagatgtctaaatctggaaatgaaagattgtaaaaat
caaatttctacctccaggcaattgttttcactttgaagttgtatttctta
aaaacagaaaaaagttgaaaagtgttttacaaagtaaagcagaactgcag
agccttctggtgtctcgtcttaagggctttatatgcactctcaaactgtg
tgtatttttgaaatctcagaccacatcatagatggtaagcaccagtaaca
ttgtaagcaaagggagagtttatggactttcaagaaacagcttgttttac
ctttctagataggttagctaggaaagacaatacctgtcaatcataaagta
taactgctaggctttgtgcttgctggttttccattgtatggatttcttaa
ctattatatctctggccctgtctggagtttatatactattttgtttgttt
catttattagttctgtgtgtgttggggtgtgtgtggcctgtccagagcct
tgtgcacactaggcatatgccctatctttgagcgacacacccaaactctc
ccatattattttattcttcttgatgtgtacacatagatctttagcctttc
ttttataagcttgtagttaagggccacaagtttagtgactgcacaggttt
ggctgcattgaatatgttgatatgtgcatctagctatagggatgtgtgtc
atatcatgaatcttttatcggcagagatgtttggcttaggaagatgcact
gaagtcccaatcttaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89536062_89537103
seq2: B6Ng01-143M16.g_68_1087

seq1  GAATTCAATTAAAGTTGCATACATGAACACACTTTAAAATTACTAAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAAGTTGCATACATGAACACACTTTAAAATTACTAAGAGC  50

seq1  TAAATTCGTGTTTAACCGTGTTATGGGTTTTTTTTTTTTAACTTTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCGTGTTTAACCGTGTTATGGGTTTTTTTTTTTTAACTTTCTTTT  100

seq1  TTATAATAGACACAAAATGTGGCTTAGAGATTTAGATTCTTAAAGGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAGACACAAAATGTGGCTTAGAGATTTAGATTCTTAAAGGAAGT  150

seq1  CATTGCTTGAAATTTCATCCTCCTTAGGAAATTAGCCCCACTTACTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTGAAATTTCATCCTCCTTAGGAAATTAGCCCCACTTACTGTTA  200

seq1  TATTTAGCTTGATGGCAATTCGCAAACATGCTGCTTGGTGGGCTCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCTTGATGGCAATTCGCAAACATGCTGCTTGGTGGGCTCATTTG  250

seq1  CATTAATGCCGGTGAGATGTCTAAATCTGGAAATGAAAGATTGTAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGCCGGTGAGATGTCTAAATCTGGAAATGAAAGATTGTAAAAAT  300

seq1  CAAATTTCTACCTCCAGGCAATTGTTTTCACTTTGAAGTTGTATTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTACCTCCAGGCAATTGTTTTCACTTTGAAGTTGTATTTCTTA  350

seq1  AAAACAGAAAAAAGTTGAAAAGTGTTTTACAAAGTAAAGCAGAACTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAAAAAAGTTGAAAAGTGTTTTACAAAGTAAAGCAGAACTGCAG  400

seq1  AGCCTTCTGGTGTCTCGTCTTAAGGGCTTTATATGCACTCTCAAACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTGGTGTCTCGTCTTAAGGGCTTTATATGCACTCTCAAACTGTG  450

seq1  TGTATTTTTGAAATCTCAGACCACATCATAGATGGTAAGCACCAGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTGAAATCTCAGACCACATCATAGATGGTAAGCACCAGTAACA  500

seq1  TTGTAAGCAAAGGGAGAGTTTATGGACTTTCAAGAAACAGCTTGTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCAAAGGGAGAGTTTATGGACTTTCAAGAAACAGCTTGTTTTAC  550

seq1  CTTTCTAGATAGGTTAGCTAGGAAAGACAATACCTGTCAATCATAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGATAGGTTAGCTAGGAAAGACAATACCTGTCAATCATAAAGTA  600

seq1  TAACTGCTAGGCTTTGTGCTTGCTGGTTTTCCATTGTATGGATTTCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTAGGCTTTGTGCTTGCTGGTTTTCCATTGTATGGATTTCTTAA  650

seq1  CTATTATATCTCTGGCCCTGTCTGGAGTTTATATACTATTTTGTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATATCTCTGGCCCTGTCTGGAGTTTATATACTATTTTGTTTGTTT  700

seq1  CATTTATTAGTTCTGTGTGTGTTGGGGTGTGTGTGGCCTGTCCAGAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTAGTTCTGTGTGTGTTGGGGTGTGTGTGGCCTGTCCAGAGCCT  750

seq1  TGTGCACACTAGGCATATGCCCTATCTTTGAGCGACACACCCAAACTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACACTAGGCATATGCCCTATCTTTGAGCGACACACCCAAACTCTC  800

seq1  CCATATTATTTTATTCTTCTTGATGTGTACACATAGATCTTTAGCCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTATTTTATTCTTCTTGATGTGTACACATAGATCTTTAGCCTTTC  850

seq1  TTTTATAAGGCTTGTAGTTAA-GGCCACAAGTTTTAGTGACTGCACAGGT  899
      |||||||| |||||||||||| ||||||||| ||||||||||||||||||
seq2  TTTTATAA-GCTTGTAGTTAAGGGCCACAAG-TTTAGTGACTGCACAGGT  898

seq1  TTGGCTGCATTTGAATATGTTTGAATATGTGCATCTAGGCTATAGGGATG  949
      ||||||||| |||||||||||   ||||||||||||| ||||||||||  
seq2  TTGGCTGCA-TTGAATATGTT--GATATGTGCATCTA-GCTATAGGGA--  942

seq1  TTGTGTTTAATAATCCAATGATATCTTTTAATCGGCAAGAAGAATGTTTT  999
       ||||| | || |||  |||| ||||||| |||||| |||   |||||| 
seq2  -TGTGTGTCAT-ATC--ATGA-ATCTTTT-ATCGGC-AGA--GATGTTTG  983

seq1  GCCTTTAGGATAGATTGCACTGAAGTCCCACATCTTATAACAA  1042
      ||  |||||| ||| ||||||||||||||| |||||| |||||
seq2  GC--TTAGGA-AGA-TGCACTGAAGTCCCA-ATCTTA-AACAA  1020