BAC Information

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BAC

Clone NameB6Ng01-143N15
Chromosome5 (Build37)
Map Location 131,288,179 - 131,442,471
singlet/doubletdoublet
Overlap geneCaln1, Wbscr17
Upstream genePsph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneAuts2, 4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143N15.bB6Ng01-143N15.g
ACCDH941681DH941682
length1,0821,081
definitionDH941681|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N15, 5' end.DH941682|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,441,376 - 131,442,471)(131,288,179 - 131,289,279)
sequence
gaattctcatggctaccacccattcctgggctgactctgtcgccctgccc
tgccctgccctgccctgccctgccctgccctgccccgcccccctctcccc
cttctctctcagctggaatggtcatgtgtgtggtgcacgtattttgtgaa
ataacaacaatcaagtgattgtttttactttttgttcctctcctctgtaa
tggagctattagggcattggcagattcccttaatacgattatcatttttg
aatgattttgagttggaatgtttgtgctaatagtggtaattgtggttgaa
tttgaaaaatgaggctgtaagcacacattcaagaatctcatcatccccag
agtgttattgactacagctcacatggctggacagatggcatggattccta
cagtggaagtgaggctacatgttgttcttggttcaccagtggtgaggatg
gggctcgctcacctgccaccaggcacagcaggtcccattgtgtcaagaag
cagcttcttgccaaggaaatgtttctcccaggcaaaggataattgattat
tttaagtccagtcagatggtctcagaatcagtcatcccctgaacttacca
gcaatgctggctggtccagcctaaactcattagcctctgctagatttgaa
ctgtgtagctgaggctaaactcatgtagtaagccagacaggtcttatata
tatgagatgccctagctggccttgagtttgccatgtagcccatggtagcc
ttgaactcactatgtggcccgggttgacctaaaacttgtaatgtagctca
ggctggccttgaacttgagaaacagtgaaggctgccttgaactcattctg
tagcccaggctagcccttttgtctttacctcccttctgcaggattgaagg
tatatgctactatgtcaaccttgacttttaccatttaactactaagtctc
cacattatttaccagtagtcacactgttctgctagaatcccaactggtgg
gggtactgcattgctaggtactccagagcctgtgtttgcattgtttcaag
caaacctgtatcctggaatctcattaggtttt
gaattcagttcctagcatacatattgggtggtgcacagccacctataact
cagcaccaaaggatccaataccctcttctgggggtacctgaactcatgtg
tacacgcacgcacgcacgcacgcacacatgcacacatgtgtgcacacaca
taggcatggataaaagaaagttaaaaggagcaaaatgatcttttcatggt
aagaaagaaagaaagaaagaaagaaagaaagaaagaagaatacagcccag
aactcaaacatgaaaattatttgggaagagatgaaatatatggaagaaca
ggatagacagctaattaggagtaatttgtgttccagaggaaaaatcgaac
tagaacaaaggaggagttgtcaaatggttgcaagaagcacccaggaggca
gaacacaatgttggtataaaaataaaaaagcctggctaagctggagccaa
gattttgcagaaacatatgtctaaatatggcacagaaactgtgtgtgtcc
gtgtgtgtgtgcgcgcgcatgcgtgcatgtgcatgcacgcacacacgtac
atgtgtgcataatctccagggtagagaaaaagtcctgctagtgttggaga
atggataaaggctattgaaagaagaaaacttaggttactcacccaacccc
aaacagaaggaaccagaaagctctgcttagctttctctgagtgtgtatcc
ttgtgcaggagtgtgtgcaccaagtgtgtgcactttactcactgagctat
acccacaccctcagctcaggtatcaacataggggcatctgtgcaattttt
atgatgtcgtatcaaaccagggtgtctatttataggagaatggaggtggg
aaaggcatggtagagctggaaagatggctcagaaggttaagcgcacagtt
gctcttctgaaggacccagttgactccggaatgtacatgatggctcatag
ctgttgtaatcagtccaggaaactgacgcctcttcttgctccaagtatta
catgacattgaacacaagcagacaccaataatatgcccgataattttaca
aacttaattttagaatgtggaaaatataatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_131441376_131442471
seq2: B6Ng01-143N15.b_48_1129 (reverse)

seq1  AAAACCCTAGAATGAGATCCCAGGATACAGGATTGCTTTGAAACAAATGC  50
       ||| |||  |||||||| |||||||||||| |||| ||||||| |||||
seq2  -AAAACCT--AATGAGATTCCAGGATACAGGTTTGC-TTGAAAC-AATGC  45

seq1  AAACACAGGGCTCTGGGAGTACCTAGCAATGCAGGTACCCCCAACAGGTG  100
      ||||||| |||||| |||||||||||||||||| ||||||||| ||| ||
seq2  AAACACA-GGCTCT-GGAGTACCTAGCAATGCA-GTACCCCCACCAGTTG  92

seq1  GGATTCTTAGCAGAACAGTGTGACTAACTGGTAAATAATGTGGAGACTTA  150
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  GGATTC-TAGCAGAACAGTGTGACT-ACTGGTAAATAATGTGGAGACTTA  140

seq1  GTAGTTAAATGGTAAAAAAGTCAAGGTTGACATAGTAGCATATACCTTCA  200
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  GTAGTTAAATGGT--AAAAGTCAAGGTTGACATAGTAGCATATACCTTCA  188

seq1  ATCCTTGCAGAAGGGAGGTAAAGACAAAAGGGCTAGCCTGGGCTACAGAA  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCC-TGCAGAAGGGAGGTAAAGACAAAAGGGCTAGCCTGGGCTACAGAA  237

seq1  TGAGTTCAAGGCAGCCTTCACTGTTTCTCAAGTTCAAGGCCAGCCTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGGCAGCCTTCACTGTTTCTCAAGTTCAAGGCCAGCCTGAGC  287

seq1  TACATTACAAGTTTTAGGTCAACCCGGGCCACATAGTGAGTTCAAGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACAAGTTTTAGGTCAACCCGGGCCACATAGTGAGTTCAAGGCTA  337

seq1  CCATGGGCTACATGGCAAACTCAAGGCCAGCCTAGGGCATCTCATATATA  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCATGGGCTACATGGCAAACTCAAGGCCAG-CTAGGGCATCTCATATATA  386

seq1  TAAGACCTGTCTGGCTTACTACATGAGTTTAGCCTCAGCTACACAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCTGTCTGGCTTACTACATGAGTTTAGCCTCAGCTACACAGTTCA  436

seq1  AATCTAGCAGAGGCTAATGAGTTTAGGCTGGACCAGCCAGCATTGCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCAGAGGCTAATGAGTTTAGGCTGGACCAGCCAGCATTGCTGGT  486

seq1  AAGTTCAGGGGATGACTGATTCTGAGACCATCTGACTGGACTTAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGGGGATGACTGATTCTGAGACCATCTGACTGGACTTAAAATAA  536

seq1  TCAATTATCCTTTGCCTGGGAGAAACATTTCCTTGGCAAGAAGCTGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATCCTTTGCCTGGGAGAAACATTTCCTTGGCAAGAAGCTGCTTC  586

seq1  TTGACACAATGGGACCTGCTGTGCCTGGTGGCAGGTGAGCGAGCCCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAATGGGACCTGCTGTGCCTGGTGGCAGGTGAGCGAGCCCCATC  636

seq1  CTCACCACTGGTGAACCAAGAACAACATGTAGCCTCACTTCCACTGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACTGGTGAACCAAGAACAACATGTAGCCTCACTTCCACTGTAGG  686

seq1  AATCCATGCCATCTGTCCAGCCATGTGAGCTGTAGTCAATAACACTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGCCATCTGTCCAGCCATGTGAGCTGTAGTCAATAACACTCTGG  736

seq1  GGATGATGAGATTCTTGAATGTGTGCTTACAGCCTCATTTTTCAAATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGAGATTCTTGAATGTGTGCTTACAGCCTCATTTTTCAAATTCA  786

seq1  ACCACAATTACCACTATTAGCACAAACATTCCAACTCAAAATCATTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATTACCACTATTAGCACAAACATTCCAACTCAAAATCATTCAAA  836

seq1  AATGATAATCGTATTAAGGGAATCTGCCAATGCCCTAATAGCTCCATTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATCGTATTAAGGGAATCTGCCAATGCCCTAATAGCTCCATTAC  886

seq1  AGAGGAGAGGAACAAAAAGTAAAAACAATCACTTGATTGTTGTTATTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGAACAAAAAGTAAAAACAATCACTTGATTGTTGTTATTTCA  936

seq1  CAAAATACGTGCACCACACACATGACCATTCCAGCTGAGAGAGAAGGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACGTGCACCACACACATGACCATTCCAGCTGAGAGAGAAGGGGG  986

seq1  AGAGGGGGGCGGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGGCGGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGCAGGGC  1036

seq1  AGGGCGACAGAGTCAGCCCAGGAATGGGTGGTAGCCATGAGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGACAGAGTCAGCCCAGGAATGGGTGGTAGCCATGAGAATTC  1082

seq1: chr5_131288179_131289279
seq2: B6Ng01-143N15.g_69_1149

seq1  GAATTCAGTTCCTAGCATACATATTGGGTGGTGCACAGCCACCTATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTAGCATACATATTGGGTGGTGCACAGCCACCTATAACT  50

seq1  CAGCACCAAAGGATCCAATACCCTCTTCTGGGGGTACCTGAACTCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCAAAGGATCCAATACCCTCTTCTGGGGGTACCTGAACTCATGTG  100

seq1  TACACGCACGCACGCACGCACGCACACATGCACACATGTGTGCACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCACGCACGCACGCACGCACACATGCACACATGTGTGCACACACA  150

seq1  TAGGCATGGATAAAAGAAAGTTAAAAGGAGCAAAATGATCTTTTCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGGATAAAAGAAAGTTAAAAGGAGCAAAATGATCTTTTCATGGT  200

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAATACAGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAATACAGCCCAG  250

seq1  AACTCAAACATGAAAATTATTTGGGAAGAGATGAAATATATGGAAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAACATGAAAATTATTTGGGAAGAGATGAAATATATGGAAGAACA  300

seq1  GGATAGACAGCTAATTAGGAGTAATTTGTGTTCCAGAGGAAAAATCGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGACAGCTAATTAGGAGTAATTTGTGTTCCAGAGGAAAAATCGAAC  350

seq1  TAGAACAAAGGAGGAGTTGTCAAATGGTTGCAAGAAGCACCCAGGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAAGGAGGAGTTGTCAAATGGTTGCAAGAAGCACCCAGGAGGCA  400

seq1  GAACACAATGTTGGTATAAAAATAAAAAAGCCTGGCTAAGCTGGAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAATGTTGGTATAAAAATAAAAAAGCCTGGCTAAGCTGGAGCCAA  450

seq1  GATTTTGCAGAAACATATGTCTAAATATGGCACAGAAACTGTGTGTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGCAGAAACATATGTCTAAATATGGCACAGAAACTGTGTGTGTCC  500

seq1  GTGTGTGTGTGCGCGCGCATGCGTGCATGTGCATGCACGCACACACGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGCGCGCGCATGCGTGCATGTGCATGCACGCACACACGTAC  550

seq1  ATGTGTGCATAATCTCCAGGGTAGAGAAAAAGTCCTGCTAGTGTTGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCATAATCTCCAGGGTAGAGAAAAAGTCCTGCTAGTGTTGGAGA  600

seq1  ATGGATAAAGGCTATTGAAAGAAGAAAACTTAGGTTACTCACCCAACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAAAGGCTATTGAAAGAAGAAAACTTAGGTTACTCACCCAACCCC  650

seq1  AAACAGAAGGAACCAGAAAGCTCTGCTTAGCTTTCTCTGAGTGTGTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGGAACCAGAAAGCTCTGCTTAGCTTTCTCTGAGTGTGTATCC  700

seq1  TTGTGCAGGAGTGTGTGCACCAAGTGTGTGCACTTTACTCACTGAGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGGAGTGTGTGCACCAAGTGTGTGCACTTTACTCACTGAGCTAT  750

seq1  ACCCACACCCTCAGCTCAGGTATCAACATAGGGGCATCTGTGCAA-TTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCCACACCCTCAGCTCAGGTATCAACATAGGGGCATCTGTGCAATTTTT  800

seq1  ATGATGTCGTATCAAACCAGGGTGTCTA-TTATAGGAGAATGGAGGTGGG  848
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGATGTCGTATCAAACCAGGGTGTCTATTTATAGGAGAATGGAGGTGGG  850

seq1  -AAGGCATGGTAGGAGCTGGAGAGATGGCTCAG-AGGTTAAGCGCACCAG  896
       ||||||||||| |||||||| ||||||||||| |||||||||||| |||
seq2  AAAGGCATGGTA-GAGCTGGAAAGATGGCTCAGAAGGTTAAGCGCA-CAG  898

seq1  TTGCTCTTCTGAAGGACCCAGGTTTGACTCCCGGAATGTACATGATGGCT  946
      |||||||||||||||||||||  |||||| ||||||||||||||||||||
seq2  TTGCTCTTCTGAAGGACCCAG--TTGACT-CCGGAATGTACATGATGGCT  945

seq1  CATAGCTGTTTGTAAATCCAGTCCCAGGGAATCTGACGCCCTCTTCTGGC  996
      |||||||| ||||||   ||||||   |||| |||||| |||||||| ||
seq2  CATAGCTG-TTGTAA--TCAGTCC--AGGAAACTGACG-CCTCTTCTTGC  989

seq1  CTTCCCAGGTATTACATGCACATGGTACACAGACAAGCACGCAGATAATA  1046
          ||| |||||||||| |||| | |||||  ||  ||| || ||||||
seq2  ---TCCAAGTATTACATG-ACATTGAACACAAGCAGACAC-CA-ATAATA  1033

seq1  TGCCCGTATAGTTTTACAAAACATTATTTTTTAAGGTATTGTGGAAAATA  1096
      |||||| ||| |||||| |||| | |||||  ||     |||||||||||
seq2  TGCCCG-ATAATTTTAC-AAACTTAATTTTAGAA-----TGTGGAAAATA  1076

seq1  TAATG  1101
      |||||
seq2  TAATG  1081