BAC Information

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BAC

Clone NameB6Ng01-143N19
Chromosome5 (Build37)
Map Location 38,710,220 - 38,867,826
singlet/doubletdoublet
Overlap geneDrd5, 4930487D11Rik, Slc2a9
Upstream geneEvc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1
Downstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143N19.bB6Ng01-143N19.g
ACCDH941689DH941690
length1,047465
definitionDH941689|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N19, 5' end.DH941690|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,710,220 - 38,711,262)(38,867,356 - 38,867,826)
sequence
gaattcagggtcctgtgacccagaataggggtttgggataaggttgtgac
atcgaaggccttccccttattctccaagtctggtttgtctagaggcctct
gcgatccacttcttcacccagaggtggtccaggagaggcacctggtgttt
gggagaagccagttcctgggcttggggcgagggtatggcaccgaggccac
tctcggatctgtgtgtggcctctaaagttggaagaagacagcagagtcac
aattccaggacgcaggtgggagggcgcgcgggccgcagaagcgtggctga
taggagcgggcgggcgcccgtgccgtggcagccaccgcgctagagagatc
gcccggtgcccgcgactctggaccccgcccccgttggcggccgctctgcg
tttctacgactcagaaccagacgcagcggcagccgccgtccggcgcgctg
ccgacaggatcggcccgcgagcaccggtcgcttcctgtcccatcctgggg
actagaggcgcgcaagactgataccattaaaggatcccaagcagtgcagg
gtgagcgcccctcgggtctggggacggtcagctgcagggccgggagcacc
ctctggggtgcccgatggggccttccgcggggcgcaggggcgaagttggg
atcgcacgcagtgagcccgagctacccagcgcgacatgctgcctcctggg
cgcaatggcaccgcacatcgggcgcggctggggttgcagaggcaactggc
gcaggtggacgcccccgggggctcagcagccccactgggacccgcgcagg
tggtcaccgctggcctccttgactctcttatcgtctgacctgctcggcac
gtcctagtgtgtgctgctatcggtccgcagccgccacctggcgcgccaaa
ttgaccaacatcttcatcgattctctgggccgtctcagacttctttctgg
cattggctggtcatgccttgaaaggccgtggctgaaggtggccgggtact
ggcctttggggcattctgcgacaatcggggtgggcctttgaacatca
atctctgaaaaaaaccgacttgtgatatggactattgatttgtctgggaa
gttcatcagagcattcacccaagagagtggggcctctgtgaaacacagat
ccatatgagatttgaactctgagtagtgtgatgtcactgacccatgaacc
acaggaaagagcagtttagtcattcattcaacaaatatatactgagtacc
tgtcacatgctagatgctgggaatcaggaaggcgatctggaggaggtgga
cattgagctgagccccatatgtctggaagcatttccaatgaggcaggggc
aggggcggtgcgggggcggggcaggggcggggcagaggcagaagtaggga
aaccaaaacacacaaggccttcctagctatatagggatgtcaatagggtg
ataatagtgaaggtgtgacttgccattcctattcccgaggggaatgggga
gatgggttgggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_38710220_38711262
seq2: B6Ng01-143N19.b_48_1094

seq1  GAATTCAGGGTCCTGTGACCCAGAATAGGGGTTTGGGATAAGGTTGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTCCTGTGACCCAGAATAGGGGTTTGGGATAAGGTTGTGAC  50

seq1  ATCGAAGGCCTTCCCCTTATTCTCCAAGTCTGGTTTGTCTAGAGGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAGGCCTTCCCCTTATTCTCCAAGTCTGGTTTGTCTAGAGGCCTCT  100

seq1  GCGATCCACTTCTTCACCCAGAGGTGGTCCAGGAGAGGCACCTGGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATCCACTTCTTCACCCAGAGGTGGTCCAGGAGAGGCACCTGGTGTTT  150

seq1  GGGAGAAGCCAGTTCCTGGGCTTGGGGCGAGGGTATGGCACCGAGGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCCAGTTCCTGGGCTTGGGGCGAGGGTATGGCACCGAGGCCAC  200

seq1  TCTCGGATCTGTGTGTGGCCTCTAAAGTTGGAAGAAGACAGCAGAGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGATCTGTGTGTGGCCTCTAAAGTTGGAAGAAGACAGCAGAGTCAC  250

seq1  AATTCCAGGACGCAGGTGGGAGGGCGCGCGGGCCGCAGAAGCGTGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGACGCAGGTGGGAGGGCGCGCGGGCCGCAGAAGCGTGGCTGA  300

seq1  TAGGAGCGGGCGGGCGCCCGTGCCGTGGCAGCCACCGCGCTAGAGAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCGGGCGGGCGCCCGTGCCGTGGCAGCCACCGCGCTAGAGAGATC  350

seq1  GCCCGGTGCCCGCGACTCTGGACCCCGCCCCCGTTGGCGGCCGCTCTGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGTGCCCGCGACTCTGGACCCCGCCCCCGTTGGCGGCCGCTCTGCG  400

seq1  TTTCTACGACTCAGAACCAGACGCAGCGGCAGCCGCCGTCCGGCGCGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACGACTCAGAACCAGACGCAGCGGCAGCCGCCGTCCGGCGCGCTG  450

seq1  CCGACAGGATCGGCCCGCGAGCACCGGTCGCTTCCTGTCCCATCCTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAGGATCGGCCCGCGAGCACCGGTCGCTTCCTGTCCCATCCTGGGG  500

seq1  ACTAGAGGCGCGCAAGACTGATACCATTAAAGGATCCCAAGCAGTGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGGCGCGCAAGACTGATACCATTAAAGGATCCCAAGCAGTGCAGG  550

seq1  GTGAGCGCCCCTCGGGTCTGGGGACGGTCAGCTGCAGGGCCGGGAGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCGCCCCTCGGGTCTGGGGACGGTCAGCTGCAGGGCCGGGAGCACC  600

seq1  CTCTGGGGTGCCCGATGGGGCCTTCCGCGGGGCGCAGGGGCGAAGTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGTGCCCGATGGGGCCTTCCGCGGGGCGCAGGGGCGAAGTTGGG  650

seq1  ATCGCACGCAGTGAGCCCGAGCTACCCAGCGCGACATGCTGCCTCCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCACGCAGTGAGCCCGAGCTACCCAGCGCGACATGCTGCCTCCTGGG  700

seq1  CGCAATGGCACCGCACATCGGGCGCGGCTGGGGTTGCAGAGGCAACTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATGGCACCGCACATCGGGCGCGGCTGGGGTTGCAGAGGCAACTGGC  750

seq1  GCAGGTGGACGCCCCCGGGGGCTCAGCAGCCCCACTGGGACCCGCGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGACGCCCCCGGGGGCTCAGCAGCCCCACTGGGACCCGCGCAGG  800

seq1  TGGTCACCGCTGGCCTCC-TGACTCTCTTAATCGTCTGGACCTTGCTCGG  849
      |||||||||||||||||| |||||||||| ||||||| |||| |||||||
seq2  TGGTCACCGCTGGCCTCCTTGACTCTCTT-ATCGTCT-GACC-TGCTCGG  847

seq1  CAACGTCCTAGTGTGTGCTGCTATC-GTCCGCAGCCGCCACCT-GCGCGC  897
      | ||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  C-ACGTCCTAGTGTGTGCTGCTATCGGTCCGCAGCCGCCACCTGGCGCGC  896

seq1  CAAAATGACCAACATCTTCATCGTATCTCT-GGCCGTCTCAGACCTCTTC  946
      |||| ||||||||||||||||||  ||||| ||||||||||||| |||| 
seq2  CAAATTGACCAACATCTTCATCGATTCTCTGGGCCGTCTCAGACTTCTTT  946

seq1  GTGGCATT-GCTGGTCATGCCTTGGAAGGCCGTGGCTG-AGGTGGCCGGG  994
       ||||||| ||||||||||||||| ||||||||||||| |||||||||||
seq2  CTGGCATTGGCTGGTCATGCCTTGAAAGGCCGTGGCTGAAGGTGGCCGGG  996

seq1  TACTGGCCCTTTGGGGCATTCTGCGAC-ATCTGGGT-GGCCTTTG-ACAT  1041
      |||||| |||||||||||||||||||| ||| |||| |||||||| ||||
seq2  TACTGG-CCTTTGGGGCATTCTGCGACAATCGGGGTGGGCCTTTGAACAT  1045

seq1  CA  1043
      ||
seq2  CA  1047

seq1: chr5_38867356_38867826
seq2: B6Ng01-143N19.g_70_540 (reverse)

seq1  TTCTCCCAACCCATCTCCCCATTCCCCTCGGGAATAGGAATGGCAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAACCCATCTCCCCATTCCCCTCGGGAATAGGAATGGCAAGTCA  50

seq1  CACCTTCACTATTATCACCCTATTGACATCCCTATATAGCTAGGAAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCACTATTATCACCCTATTGACATCCCTATATAGCTAGGAAGGCC  100

seq1  TTGTGTGTTTTGGTTTCCCTACTTCTGCCTCTGCCCCGCCCCTGCCCCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTTTTGGTTTCCCTACTTCTGCCTCTGCCCCGCCCCTGCCCCGC  150

seq1  CCCCGCACCGCCCCTGCCCCTGCCTCATTGGAAATGCTTCCAGACATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCACCGCCCCTGCCCCTGCCTCATTGGAAATGCTTCCAGACATATG  200

seq1  GGGCTCAGCTCAATGTCCACCTCCTCCAGATCGCCTTCCTGATTCCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGCTCAATGTCCACCTCCTCCAGATCGCCTTCCTGATTCCCAGC  250

seq1  ATCTAGCATGTGACAGGTACTCAGTATATATTTGTTGAATGAATGACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCATGTGACAGGTACTCAGTATATATTTGTTGAATGAATGACTAA  300

seq1  ACTGCTCTTTCCTGTGGTTCATGGGTCAGTGACATCACACTACTCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTTCCTGTGGTTCATGGGTCAGTGACATCACACTACTCAGAGT  350

seq1  TCAAATCTCATATGGATCTGTGTTTCACAGAGGCCCCACTCTCTTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTCATATGGATCTGTGTTTCACAGAGGCCCCACTCTCTTGGGTG  400

seq1  AATGCTCTGATGAACTTCCCAGACAAATCAATAGTCCATATCACAAGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTGATGAACTTCCCAGACAAATCAATAGTCCATATCACAAGTCG  450

seq1  GTTTTTTTCAGAGATGAATTC  471
      |||||||||||||||||||||
seq2  GTTTTTTTCAGAGATGAATTC  471