BAC Information

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BAC

Clone NameB6Ng01-144E05
Chromosome5 (Build37)14 (Build37)
Map Location 89,095,282 - 89,096,03754,995,239 - 54,996,408
singlet/doubletsingletsinglet
Overlap geneGrsf1
Upstream geneCsn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3
Downstream geneMobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144E05.bB6Ng01-144E05.g
ACCDH941987DH941988
length4611,138
definitionDH941987|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E05, 5' end.DH941988|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,095,282 - 89,096,037)(54,995,239 - 54,996,408)
sequence
gaattcactttgtagaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcaccacgcccggctgctcctta
gccttttgaaacatctcctccctttccccctagacaagatttctctgcag
atccatggctgtcctggaactgtagaccaggctggcctcaaactcagaga
tctgcctgcctctgcctccaaagattaaaggatgtgtactaccaccaaca
ccgctaccctgcaccttttggaaaatttttaaaaaatataaatttcttta
ttatgtatagcgttctacctcatgtatacatgtacactagaagagggcat
cagatctcattacagatggttgtgagacaccatgtggttgctgggaattg
aactcaggacctctgggagagcagtcagtgctcttaacctctgagccatc
tctccagcccc
gaattccaggtgccattctaagtggcagccatgaaaaaggcacaatgaca
ccttaaggtctctcaagtgcaaaaagatcactgtctgtataaatgccaaa
aatgaggaataaataagggaactggatctgggatccaggacacatttgca
gtggttcaacctgtggatctcgatctcattcatcctacagatagatattt
gcattacaattcataacagcaaaactagttatgaagtagcaaccaaaata
actacagttaggggtcaccacaacatgaggaactgtattaaagggttgta
gcattaggaaggttgagaaccactgctctttaaagccttgagcatgataa
caaatgctctaccatgagccctgccccaatccctctgttaatattgactg
ggtctcagtaagtttctccgagaggccttgaattcactctgtacttggct
ttgaacttgggatgctcctgcctcagcctccagagtggctgggttacaag
cctttaccatgagtcagggttgcaaattatctggagtcattcagctcctt
gccagtaggtggaagcaccactacccagtctcttttcccttctagtaccc
ctgctccttggtcacagtgccagcagctgtataccagaaaagcggctcgg
ttttcaaagccaaaagctaactggtatgagaattgttataatttaggcaa
actatttcctggcaaatcttagtttctaggatcataatcttttagagcca
ggaaaggccatggagatcctgtaattccaccctcttaatattatattacc
gaagcaggcaagggctagggaaatggctcagtccatgaagccacttgcaa
ggaggggctgggtttgacctcagagcctacatggaaagggttggtgcgtt
gtggaggatggggtgccctgattctgatcccagaatcagagaatcaggaa
cagagaccctagggttccacagcctgcagccttgcctattagcagctcaa
gtcactgaagaatcagtctcaaaacaaagatgggagctgagaatggttca
gtctgctacaaccaagttcttcctaagaacttagtctgtttcatggtacc
taaggctcagctagcccaggttcacacagtaataaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89095282_89096037
seq2: B6Ng01-144E05.b_208_505 (reverse)

seq1  GGGGCTGGAGAGGTGGCTCAGAGGTTTAGAGCACTGATTGCTTGCTCTTC  50
      |||||||||||| ||||||||||||| ||||||||||     |||||| |
seq2  GGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGA----CTGCTCTCC  46

seq1  CAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCAT  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGTCTCACAACCAT  96

seq1  CTGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAG  150
      |||||||| ||||  |||||||||||| ||||   || | |||  |   |
seq2  CTGTAATGAGATCTGATGCCCTCTTCTAGTGTACATGTATACA--TGAGG  144

seq1  T-GTACTCATATAAATGAAATAAATAAATCATTAAAAAAAAAAAGAATGT  199
      | | || | |||| ||  |||||| ||||  ||| |      || ||| |
seq2  TAGAACGC-TATACAT--AATAAAGAAAT--TTATATTTTTTAAAAATTT  189

seq1  TCTTTCAGCAGAACAGGTCAACATGCTAATTTGCCCCAAAATGATCACTT  249
      ||         || ||||   || | ||    ||       || |     
seq2  TC--------CAAAAGGT--GCAGGGTA----GC-----GGTGTTGGTGG  220

seq1  ATGTATACATGATTTATGAATAT-----GGCATTTTTCATTTACGCAGTT  294
        ||| ||||  |||   ||| |     ||||      |   | |||| |
seq2  TAGTACACATCCTTT---AATCTTTGGAGGCA-----GAGGCAGGCAGAT  262

seq1  TTTAAATGTGTTTTTGAAAGAGCTTATTAAAGTCTAATTCTCACAGTACT  344
       |    || ||||      |||   |     ||||       ||||   |
seq2  CT---CTGAGTTT------GAGGCCAGCCTGGTCT-------ACAG---T  293

seq1  TCCATATCATGACTGTGAGCTCCCTGTTGCAAGGGAATAACTTATAAACT  394
      ||||                                              
seq2  TCCAG---------------------------------------------  298

seq1  AATATCATATCCCAGCTACTTAGAACATATGTGAACAAGCATATATTTTG  444
                                                        
seq2  --------------------------------------------------  298

seq1  TAATAGTATTCACACACACACAGAGTAATCTGGAAGATGGCCATGGTAGC  494
                                                        
seq2  --------------------------------------------------  298

seq1  CAGGCAGGGAAGCTGAGCATGGCAGCGCACACTGTAAGGCAAGCACCAGG  544
                                                        
seq2  --------------------------------------------------  298

seq1  AGGGTGCTCACTCAAAAGTTCAAGGCAGAGGAGGCCGCACAGTGAATTCT  594
                                                        
seq2  --------------------------------------------------  298

seq1  ATGCCAGCCTGAGCTACAGTTAAGAGCCTGTCTCAGAACAGAAGTAAAAT  644
                                                        
seq2  --------------------------------------------------  298

seq1  CTCCCAAATCAGCCAGGCATGGAGGCCCACGCCTTTAATCCCAGCACTTG  694
                                                        
seq2  --------------------------------------------------  298

seq1  GGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAG  744
                                                        
seq2  --------------------------------------------------  298

seq1  AGTGAGTTCCAG  756
                  
seq2  ------------  298

seq1: chr14_54995239_54996408
seq2: B6Ng01-144E05.g_68_1205

seq1  GAATTCCAGGTGCCATTCTAAGTGGCAGCCATGAAAAAGGCACAATGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCCATTCTAAGTGGCAGCCATGAAAAAGGCACAATGACA  50

seq1  CCTTAAGGTCTCTCAAGTGCAAAAAGATCACTGTCTGTATAAATGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGTCTCTCAAGTGCAAAAAGATCACTGTCTGTATAAATGCCAAA  100

seq1  AATGAGGAATAAATAAGGGAACTGGATCTGGGATCCAGGACACATTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAATAAATAAGGGAACTGGATCTGGGATCCAGGACACATTTGCA  150

seq1  GTGGTTCAACCTGTGGATCTCGATCTCATTCATCCTACAGATAGATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCAACCTGTGGATCTCGATCTCATTCATCCTACAGATAGATATTT  200

seq1  GCATTACAATTCATAACAGCAAAACTAGTTATGAAGTAGCAACCAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACAATTCATAACAGCAAAACTAGTTATGAAGTAGCAACCAAAATA  250

seq1  ACTACAGTTAGGGGTCACCACAACATGAGGAACTGTATTAAAGGGTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTTAGGGGTCACCACAACATGAGGAACTGTATTAAAGGGTTGTA  300

seq1  GCATTAGGAAGGTTGAGAACCACTGCTCTTTAAAGCCTTGAGCATGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGGAAGGTTGAGAACCACTGCTCTTTAAAGCCTTGAGCATGATAA  350

seq1  CAAATGCTCTACCATGAGCCCTGCCCCAATCCCTCTGTTAATATTGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTCTACCATGAGCCCTGCCCCAATCCCTCTGTTAATATTGACTG  400

seq1  GGTCTCAGTAAGTTTCTCCGAGAGGCCTTGAATTCACTCTGTACTTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGTAAGTTTCTCCGAGAGGCCTTGAATTCACTCTGTACTTGGCT  450

seq1  TTGAACTTGGGATGCTCCTGCCTCAGCCTCCAGAGTGGCTGGGTTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTGGGATGCTCCTGCCTCAGCCTCCAGAGTGGCTGGGTTACAAG  500

seq1  CCTTTACCATGAGTCAGGGTTGCAAATTATCTGGAGTCATTCAGCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCATGAGTCAGGGTTGCAAATTATCTGGAGTCATTCAGCTCCTT  550

seq1  GCCAGTAGGTGGAAGCACCACTACCCAGTCTCTTTTCCCTTCTAGTACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGGTGGAAGCACCACTACCCAGTCTCTTTTCCCTTCTAGTACCC  600

seq1  CTGCTCCTTGGTCACAGTGCCAGCAGCTGTATACCAGAAAAGCGGCTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTTGGTCACAGTGCCAGCAGCTGTATACCAGAAAAGCGGCTCGG  650

seq1  TTTTCAAAGCCAAAAGCTAACTGGTATGAGAATTGTTATAATTTAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGCCAAAAGCTAACTGGTATGAGAATTGTTATAATTTAGGCAA  700

seq1  ACTATTTCCTGGCAAATCTTAGTTTCTAGGATCATAATCTTTTAGAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCCTGGCAAATCTTAGTTTCTAGGATCATAATCTTTTAGAGCCA  750

seq1  GGAAAGGCCATGGAGATCCTGTAATTCCACCCTCTTAATATTATATTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCCATGGAGATCCTGTAATTCCACCCTCTTAATATTATATTACC  800

seq1  GAAGCAGGCAAGGGCTAGGGAAATGGCTCAGTCCATGAAGCCACTTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGCAAGGGCTAGGGAAATGGCTCAGTCCATGAAGCCACTTGCAA  850

seq1  GGAGGGGCTGGGTTTGACCTCAGAGCCTACATGGAAAGGGTTGGTGCGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCTGGGTTTGACCTCAGAGCCTACATGGAAAGGGTTGGTGCGTT  900

seq1  GTGGAGGATGGGGTGCCCTGATTCTGATCCCAGAATCAGAGAATCAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGATGGGGTGCCCTGATTCTGATCCCAGAATCAGAGAATCAGGAA  950

seq1  CAGAAGGACCCTAGGGTTCCACAGCCTGCCAGCCTTGCCTAATTAGCAAG  1000
      ||||  |||||||||||||||||||||| ||||||||||| |||||| ||
seq2  CAGA--GACCCTAGGGTTCCACAGCCTG-CAGCCTTGCCT-ATTAGC-AG  995

seq1  CTCCAAGTCACTGAAGGAATCAGTCTCCAAAACAAAGATGGGAGCTGGAG  1050
      || |||||||||||| |||||||||| ||||||||||||||||||| |||
seq2  CT-CAAGTCACTGAA-GAATCAGTCT-CAAAACAAAGATGGGAGCT-GAG  1041

seq1  AAATGGCTCAG-CTGCTACAAACCCAAGTTCCTCCAGAGGACCTAGGTTC  1099
       ||||| |||| |||||||||  |||||||| |||  || || |||  ||
seq2  -AATGGTTCAGTCTGCTACAA--CCAAGTTCTTCCTAAGAACTTAG--TC  1086

seq1  TGTTCCGAGTGTGCACCTTAATGGCTCACAGCTATGCACTCAGGTTCACA  1149
      |||| |  |   | ||||  | ||||  ||||||    | ||||||||||
seq2  TGTTTCATG---GTACCT--AAGGCT--CAGCTA---GCCCAGGTTCACA  1126

seq1  CACACACATATAAAATAAATA  1170
      ||           ||||||||
seq2  CA---------GTAATAAATA  1138