BAC Information

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BAC

Clone NameB6Ng01-144I11
Chromosome5 (Build37)
Map Location 50,963,733 - 50,964,916
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144I11.bB6Ng01-144I11.g
ACCDH942184DH942185
length1,1691,236
definitionDH942184|Mus musculus domesticus DNA, BAC clone: B6Ng01-144I11, 5' end.DH942185|Mus musculus domesticus DNA, BAC clone: B6Ng01-144I11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgcacctaaggctcaaaggaaaattgtggaagagagccagagg
atcaggaaattttccagctgatttttcatccaagtattcagtcaattaat
tcaagactttatctgttagcaatgtcagaagctgtgtacatagtcttacc
cacataaacaccaatgtgagctgaacaagaacaacaatagagatggcaaa
gtggatgagggaaaggtcaggaggttcatccctacacaaagaggaacaga
caacgaagaaatgctgaaagcaggagagagcgtcttcctaggaatgatca
cacccattagttactgagtaccaaacacaggtaaggaacatcatacagac
ttatcagtttatatttaatctttagagtttggagcgaggaaagaaatgag
gaaatagatgtaattgtgtcacgatttaaaaagatttaaaacatacctat
gaagagcttgttgatttctgacatgctttgttgctcaagaaatctaaagt
gagtgagaagaaaggcaagatgcagaggaatacacacgctaaaaataatc
tcagatattttgaaagtttactctttcccctagaaaattacctccctcat
gtcaaaacagagaggaaaaagtatcatagaatctatcctagtcttaaatt
tcttctacattgactaaacaaccatctgttgtatacttgacttcctctag
ttacagaacacccacaatcagcaaatttacctattccatcttctgaagat
gctaactgttctcccctaggtaaaatgctattttcccagccctacacaat
gactacaaagtgaggttacatctttttatactaaaataacatatatccaa
atatggtctggtttttggaactagcctttatcattattagtccctgttct
ctcttctcccaattcctcttctaatattccaagccccttgtctctgactg
cttctataacattctttcttatatggggaaacttaacatgctttgagtat
gagaactaaatctgggctgctgtgtgaaaagcatcatacataggcagatg
catgtctcaagagcaaagtttctaagtgtactccctctttcaagtttgga
tccacatctgcttgagacatgaatttaaggtgctgggttgttccttgaga
ttatggacattagtttttt
gaattcaagcagggcaggaatctaatggtaggagctgatacagagggcat
gctgggtgcttcttaatggcttgttcatcatggcttgtccaacctgcctc
cttatagaacctaggaggaaaagcacaggcatggcaccacctacaatggg
ctggccccttccacatcactcgctcattaagaaaatgccaaaatgatcca
ttcctatctccttgtactaaggtcaaatctaagtggattaaggaactcca
cagaaaaccagagacactgaaacttatagaggagaaagtagggaaaagcg
tcgaagatatgggtacaggggaaaagttcctgaatagaacagcaatggct
tgtgctgtaagatcgagaatcgataaatgggacctcataaagttccaaag
cttctgcaagacaaaagacaccgtcaataagacaaaaaggtcactaacag
attgggaaaggatctttacctatcctaaatcagataggggactaatatcc
aatatatataaagaacttaagaaggtggactccagaaaatcaaataaccc
cattaaaatatcgggctcagagctaaacaaagaattctcaacctgaggaa
taccgaatggcagagaagcacctgaaaaaattttcaacatctttaatcat
cagggaaatgcaaatcaaatcaacactgagattctacctcacaccagtca
gaatggctaagatcaaaaattcaggtgagagcagatgctggcgaggatgt
ggagaaagagagaaactcctccactgttggtgggatcgcaagcttttaca
accactctggaaatcattctggtggttctcagaaaattggacattgtaca
accggaggatcctgcaatacctctcctgggcatatatccagatgttcaac
cggtaagagcacacatgctccactatgttcataggagccttatttataat
agccagaagctggaaagaaccagatgcccctcaacagaggatggatacag
aagtgtggtacatttacacatggagtactactcagcttattaaaaagaat
gaatttatgaaatcctagccaatgatgggcctggagagcatcatcctgga
tgagtaccgaatcacaaggaactcaccaaatgtactctgatagtgatact
agccgaaacctagatccaagaataggatccatgtctaacacattaaacct
ctcagagagaacacgacggccagtagtgtgaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50963733_50964916
seq2: B6Ng01-144I11.b_43_1211

seq1  GAATTCTTGCACCTAAGGCTCAAAGGAAAATTGTGGAAGAGAGCCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCACCTAAGGCTCAAAGGAAAATTGTGGAAGAGAGCCAGAGG  50

seq1  ATCAGGAAATTTTCCAGCTGATTTTTCATCCAAGTATTCAGTCAATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAATTTTCCAGCTGATTTTTCATCCAAGTATTCAGTCAATTAAT  100

seq1  TCAAGACTTTATCTGTTAGCAATGTCAGAAGCTGTGTACATAGTCTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTTTATCTGTTAGCAATGTCAGAAGCTGTGTACATAGTCTTACC  150

seq1  CACATAAACACCAATGTGAGCTGAACAAGAACAACAATAGAGATGGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAACACCAATGTGAGCTGAACAAGAACAACAATAGAGATGGCAAA  200

seq1  GTGGATGAGGGAAAGGTCAGGAGGTTCATCCCTACACAAAGAGGAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGAGGGAAAGGTCAGGAGGTTCATCCCTACACAAAGAGGAACAGA  250

seq1  CAACGAAGAAATGCTGAAAGCAGGAGAGAGCGTCTTCCTAGGAATGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAAGAAATGCTGAAAGCAGGAGAGAGCGTCTTCCTAGGAATGATCA  300

seq1  CACCCATTAGTTACTGAGTACCAAACACAGGTAAGGAACATCATACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTAGTTACTGAGTACCAAACACAGGTAAGGAACATCATACAGAC  350

seq1  TTATCAGTTTATATTTAATCTTTAGAGTTTGGAGCGAGGAAAGAAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTTTATATTTAATCTTTAGAGTTTGGAGCGAGGAAAGAAATGAG  400

seq1  GAAATAGATGTAATTGTGTCACGATTTAAAAAGATTTAAAACATACCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGATGTAATTGTGTCACGATTTAAAAAGATTTAAAACATACCTAT  450

seq1  GAAGAGCTTGTTGATTTCTGACATGCTTTGTTGCTCAAGAAATCTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTTGTTGATTTCTGACATGCTTTGTTGCTCAAGAAATCTAAAGT  500

seq1  GAGTGAGAAGAAAGGCAAGATGCAGAGGAATACACACGCTAAAAATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGAAGAAAGGCAAGATGCAGAGGAATACACACGCTAAAAATAATC  550

seq1  TCAGATATTTTGAAAGTTTACTCTTTCCCCTAGAAAATTACCTCCCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATTTTGAAAGTTTACTCTTTCCCCTAGAAAATTACCTCCCTCAT  600

seq1  GTCAAAACAGAGAGGAAAAAGTATCATAGAATCTATCCTAGTCTTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACAGAGAGGAAAAAGTATCATAGAATCTATCCTAGTCTTAAATT  650

seq1  TCTTCTACATTGACTAAACAACCATCTGTTGTATACTTGACTTCCTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACATTGACTAAACAACCATCTGTTGTATACTTGACTTCCTCTAG  700

seq1  TTACAGAACACCCACAATCAGCAAATTTACCTATTCCATCTTCTGAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAACACCCACAATCAGCAAATTTACCTATTCCATCTTCTGAAGAT  750

seq1  GCTAACTGTTCTCCCCTAGGTAAAATGCTATTTTCCCAGCCCTACACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGTTCTCCCCTAGGTAAAATGCTATTTTCCCAGCCCTACACAAT  800

seq1  GACTACAAAGTGAGGTTACATCTTTTTATACTAAAATAACATATATCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAAAGTGAGGTTACATCTTTTTATACTAAAATAACATATATCCAA  850

seq1  ATATGGTCTGGTTTTTGGAACTAGCCTTTATCATTATTAGTCCCTGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTCTGGTTTTTGGAACTAGCCTTTATCATTATTAGTCCCTGTTCT  900

seq1  CTCTTCTCCCAATTCCTCTTCTAATATTCCAAGCCCCTTGTCCTCTGACT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCTTCTCCCAATTCCTCTTCTAATATTCCAAGCCCCTTGT-CTCTGACT  949

seq1  GCTTCTATAAACATTCTTTCTTATATGGGGAAACTTAACATGCTTTGAGT  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAT-AACATTCTTTCTTATATGGGGAAACTTAACATGCTTTGAGT  998

seq1  ATGAGAACTAAATCTGGGCTGCTGTGTGAAAAGCATCATACATAGGCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACTAAATCTGGGCTGCTGTGTGAAAAGCATCATACATAGGCAGA  1048

seq1  TGCAATGTCCTCAAAGAGCAAAAGTTTCTAAGTGTACCCCCTCTTTTCAG  1100
      ||| |||| ||| |||||| ||||||||||||||||| ||||||||  ||
seq2  TGC-ATGT-CTC-AAGAGC-AAAGTTTCTAAGTGTACTCCCTCTTTCAAG  1094

seq1  TTTTGATCCACATCTGCTAGAGGACATGAATTTTAGGGTGCCTTGGGTAT  1150
      ||| |||||||||||||| || |||||||| |||| |||||  ||||| |
seq2  TTTGGATCCACATCTGCTTGA-GACATGAA-TTTAAGGTGC--TGGGT-T  1139

seq1  GTCTCTTTGGAAGATTAATGGACATTAGGTTTTT  1184
      || || |||  ||||| ||||||||||| |||||
seq2  GT-TCCTTG--AGATT-ATGGACATTAGTTTTTT  1169