BAC Information

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BAC

Clone NameB6Ng01-144K23
Chromosome5 (Build37)
Map Location 33,624,263 - 33,730,464
singlet/doubletdoublet
Overlap geneMaea, 4933407H18Rik
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1
Downstream geneLOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144K23.bB6Ng01-144K23.g
ACCDH942295DH942296
length5491,031
definitionDH942295|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K23, 5' end.DH942296|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,729,910 - 33,730,464)(33,624,263 - 33,625,308)
sequence
ctggaagtcagaaacaagcagcattctgaactgatgagagcgggtgaaga
gctcatccacgatctggaaggccgagaggcggatctcggcatggccctgg
gtcagctgtgtgatcagcaggcggtaggcatggctcagctgctcctcgga
agacctgggaacacaggccagcctaactgaatacttactcagcaaagaca
aatcagcgtcacattttgggtggggacactacattcacaggtctgtgggg
ggggggggactgtgctcagcatccaatcctcattctccccttctaaagct
gagtagacagaccagtgtctaagcaccaagtgtggctcactcctggcctg
tttctgtactgcccaggagacaagagcattttctacattttcaaatggct
aaggcagctgttggtgtggcgcagtggtaaagcatctgactagcttgtgt
gaggtcctcagctggacctccagcactgtaaggataaacatggtgaaaac
acaaaagaatacaaacgttacattaagaatcaaatggggctggagagac
gaattctctcaaggcccagcccctctgcctgtggctgcactgaggtttct
gtcagacagatcatttatttcacttcctcttctgttttcccattggcata
ccactgcccaacacattccaaggagggatactaatgtccctgttttaaaa
tggagatggcgatagctcctggggaaggcaggatgacagctccacccact
gaaactggccaggtctcccagaaggcacagctttcccaatatgtacacac
gcctaaactgaagatgactccctctaaaatggttattaacatgtcttcta
ttgaactaaagcaagacaatgggggcgggtactgattatctgagacacag
ctttctgcatcattggaagtaataacataaaatagctttacatctgccgc
caacgacgaactacctgccacacacaaacctactggatacgtgagaactt
ctctagggttttggttggggaagaccacttgtcctttactggcaatgggg
tggtaatgggcaacactgtctcaggccaggctggtctgccatacagagct
cagtcttggaggcccacaccaggggctttgggaacagtcttaagagctga
tggcgggctggtgagatggctcagtgggtaagagcacccgactgctcttc
cgaaggtctgaagttcaaatcccagcaaccacatggtggctcacaaccat
ccaaaatgagatctgactccctcttctggagtgtctgaagacagctacag
tgtacttatatataataaaaataaataaatcttaaaaaaaaaaaaaaaga
gctgatggcactgggcttgtcctagactccccattgacagatgccctgcc
tagcacttccacaggcaggatggaaggaagtatttcgagcacttcttggc
actgtagactagactgtgtcacagagaagaagctgtcactctctctctca
cttctcactcagtaccctgagctccttttacgagctgcggcaacccagga
tcctttgttgctagcagcaacagctaatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_33729910_33730464
seq2: B6Ng01-144K23.b_45_599 (reverse)

seq1  GTCTCTCCAGCCCCATTTGATTCTTAATGTAACGTTTGTATTCTTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCAGCCCCATTTGATTCTTAATGTAACGTTTGTATTCTTTTGTG  50

seq1  TTTTCACCATGTTTATCCTTACAGTGCTGGAGGTCCAGCTGAGGACCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCATGTTTATCCTTACAGTGCTGGAGGTCCAGCTGAGGACCTCA  100

seq1  CACAAGCTAGTCAGATGCTTTACCACTGCGCCACACCAACAGCTGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTAGTCAGATGCTTTACCACTGCGCCACACCAACAGCTGCCTTA  150

seq1  GCCATTTGAAAATGTAGAAAATGCTCTTGTCTCCTGGGCAGTACAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGAAAATGTAGAAAATGCTCTTGTCTCCTGGGCAGTACAGAAAC  200

seq1  AGGCCAGGAGTGAGCCACACTTGGTGCTTAGACACTGGTCTGTCTACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGAGTGAGCCACACTTGGTGCTTAGACACTGGTCTGTCTACTCA  250

seq1  GCTTTAGAAGGGGAGAATGAGGATTGGATGCTGAGCACAGTCCCCCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGAAGGGGAGAATGAGGATTGGATGCTGAGCACAGTCCCCCCCCC  300

seq1  CCCACAGACCTGTGAATGTAGTGTCCCCACCCAAAATGTGACGCTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGACCTGTGAATGTAGTGTCCCCACCCAAAATGTGACGCTGATTT  350

seq1  GTCTTTGCTGAGTAAGTATTCAGTTAGGCTGGCCTGTGTTCCCAGGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCTGAGTAAGTATTCAGTTAGGCTGGCCTGTGTTCCCAGGTCTT  400

seq1  CCGAGGAGCAGCTGAGCCATGCCTACCGCCTGCTGATCACACAGCTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGAGCAGCTGAGCCATGCCTACCGCCTGCTGATCACACAGCTGACC  450

seq1  CAGGGCCATGCCGAGATCCGCCTCTCGGCCTTCCAGATCGTGGATGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCATGCCGAGATCCGCCTCTCGGCCTTCCAGATCGTGGATGAGCT  500

seq1  CTTCACCCGCTCTCATCAGTTCAGAATGCTGCTTGTTTCTGACTTCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCGCTCTCATCAGTTCAGAATGCTGCTTGTTTCTGACTTCCAGG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555

seq1: chr5_33624263_33625308
seq2: B6Ng01-144K23.g_68_1098

seq1  GAATTCTCTCAAGGCCCAGCCCCTCTGCCTGTGGCTGCACTGAGGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAGGCCCAGCCCCTCTGCCTGTGGCTGCACTGAGGTTTCT  50

seq1  GTCAGACAGATCATTTATTTCACTTCCTCTTCTGTTTTCCCATTGGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACAGATCATTTATTTCACTTCCTCTTCTGTTTTCCCATTGGCATA  100

seq1  CCACTGCCCAACACATTCCAAGGAGGGATACTAATGTCCCTGTTTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCCAACACATTCCAAGGAGGGATACTAATGTCCCTGTTTTAAAA  150

seq1  TGGAGATGGCGATAGCTCCTGGGGAAGGCAGGATGACAGCTCCACCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGGCGATAGCTCCTGGGGAAGGCAGGATGACAGCTCCACCCACT  200

seq1  GAAACTGGCCAGGTCTCCCAGAAGGCACAGCTTTCCCAATATGTACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGCCAGGTCTCCCAGAAGGCACAGCTTTCCCAATATGTACACAC  250

seq1  GCCTAAACTGAAGATGACTCCCTCTAAAATGGTTATTAACATGTCTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAACTGAAGATGACTCCCTCTAAAATGGTTATTAACATGTCTTCTA  300

seq1  TTGAACTAAAGCAAGACAATGGGGGCGGGTACTGATTATCTGAGACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTAAAGCAAGACAATGGGGGCGGGTACTGATTATCTGAGACACAG  350

seq1  CTTTCTGCATCATTGGAAGTAATAACATAAAATAGCTTTACATCTGCCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCATCATTGGAAGTAATAACATAAAATAGCTTTACATCTGCCGC  400

seq1  CAACGACGAACTACCTGCCACACACAAACCTACTGGATACGTGAGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGACGAACTACCTGCCACACACAAACCTACTGGATACGTGAGAACTT  450

seq1  CTCTAGGGTTTTGGTTGGGGAAGACCACTTGTCCTTTACTGGCAATGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGTTTTGGTTGGGGAAGACCACTTGTCCTTTACTGGCAATGGGG  500

seq1  TGGTAATGGGCAACACTGTCTCAGGCCAGGCTGGTCTGCCATACAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGGGCAACACTGTCTCAGGCCAGGCTGGTCTGCCATACAGAGCT  550

seq1  CAGTCTTGGAGGCCCACACCAGGGGCTTTGGGAACAGTCTTAAGAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGGAGGCCCACACCAGGGGCTTTGGGAACAGTCTTAAGAGCTGA  600

seq1  TGGCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC  650

seq1  CGAAGGTCTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTCTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  700

seq1  CCAAAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAG  750

seq1  TGTACTTATATATAATAAAAATAAATAAATCTTAAAAAAAAAAAAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTATATATAATAAAAATAAATAAATCTTAAAAAAAAAAAAAAAGA  800

seq1  GCTGATGGCACTGGGCTTGTCCTAGACTCCCCATTGACAGATGCCCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGCACTGGGCTTGTCCTAGACTCCCCATTGACAGATGCCCTGCC  850

seq1  TAGCACTTCCACAGGCAGGATGGAAGGAAGTATTTCGAGCACTCCTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGCACTTCCACAGGCAGGATGGAAGGAAGTATTTCGAGCACTTCTTGGC  900

seq1  ACTGTAGACTAGACTGTGGTCACAGAGAAGAAAGCTGTCACTCTCCTCTC  950
      ||||||||||||||||| |||||||||||| ||||||||||||| |||||
seq2  ACTGTAGACTAGACTGT-GTCACAGAGAAG-AAGCTGTCACTCT-CTCTC  947

seq1  TCACTTCTCACCTCAGTACCCTGAGCTCCTTTTTAACGGAAGCTGCGGGC  1000
      |||||||||| ||||||||||||||||||||||  |||  ||||||||  
seq2  TCACTTCTCA-CTCAGTACCCTGAGCTCCTTTT--ACG--AGCTGCGG--  990

seq1  CAAACCCAGAACCCTTTGTTTGCTAGCAAGCAAACAGCTAAATCCC  1046
        ||||||| | |||||| |||||||| ||| ||||||| ||||||
seq2  -CAACCCAGGATCCTTTG-TTGCTAGC-AGC-AACAGCT-AATCCC  1031