BAC Information

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BAC

Clone NameB6Ng01-144N01
Chromosome5 (Build37)
Map Location 41,331,578 - 41,332,686
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144N01.bB6Ng01-144N01.g
ACCDH942389DH942390
length1,099803
definitionDH942389|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N01, 5' end.DH942390|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagagatctcttgactctagtgtctctgaatctttctacattca
tctttcaatttgaggtgtgaggatgctcctttaaaagtttcaattttacc
atttggtgcactgagtcttctagttttaggagttactcttagttgaaaat
taattatatgcatgtatggaaataccctaatgaagttaccctgtacaatt
aattagaaaatatagagcaaaaaaaattccagtccaataaaaattagtat
tgggttcaagtttttatgtttttatctcctaaaagatagttttttttatt
ttaaaatataggaaaatacattcctaataaataataaaaccttcttgaaa
tttaataatgaataaacaatatagggcttttacattcttatttctgtgta
tgcctgcagcacaattgcttcctaactcctcagtgcccttaagtactaag
tgtccttaagtactatggcccaaagtagacacagtgtacccagaatttct
ttgcccatttctcaatgtcacccaattctctcaaaaccttttataatcat
aacacaaaggcatagataaggattcggaagcacctattatgtttcagttc
tgctctccctggggatatggaagcaaacattcaactcctctttatcaagc
cctaaaaaactacagttctaccaaagtcaaacctaggaagccaatgagtt
tattgggctaatgaatgagagtttatttacaggactgtaggtcatctcca
agaattacaccaggggaaaggctcatgccagtatggatgcagacttcatc
agagctgcatagatggggtcctccacttccattcctctttcatatggtat
gtatactctggcatgtctgaagatcatagactcagagcaattactgggaa
tttacatacacatggtcacgaatagcagagtaaatggtagtaatctcatg
tgagagtccaattatgcttcccccctcctcctctgagggaacacttaaga
catcagatattctcttgcagcactcatcatgatcagtgttatacgcgagg
aactatacattgacttggagaacatgcagaaataaatgttgaatggaga
gaattcactcactgtcattgttaaagcagtttgggtactgaataggaaac
tggtgggttctatggattgctcatggtacagcattctgatgggccataca
gctgaggtacaactgaaggggtagcagaggaagcaaaaatgtcagtgttt
cccaggctataatgggtgaccaggctgagcatggtgcccttttctgtgtg
aagaagattgtggatcattcagggatcaatcttctctagttcacggctat
gatgcttctcaaggtagagactggggaacaaaatactcatgggagcaaat
atggagacaaaatgtggacactgaaggaaaggccatccagagactgcccc
accttgggattcatcctttatacagtcaccaaacccaggcactattgtga
atgccaagatgtggttgatgaaaggaacctgatatagctgtctcctgaga
ggctttgccaaagcctgacaaataaagaggcagatgcttgcagccaccca
ttggactgagcacggggaccccaatggagaagttagaaaaaggactgaag
cagctgaaggggtttgaaactccataggaagaacaataatatcaaccaac
cagacactccagagctcctagggactaaaccaccaaccaaggagtatacg
tggagggccccatggctccagctgcagatgtagcagaagatggcattgtc
gggcatcagtgggaggagaggcccttggtcctgtgagggctccaggacaa
gtataggagaattcaagggcagggaggcaggagtgggatggtggttgggg
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41331578_41332686
seq2: B6Ng01-144N01.b_47_1145

seq1  GAATTCTAGAGATCTCTTGACTCTAGTGTCTCTGAATCTTTCTACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGATCTCTTGACTCTAGTGTCTCTGAATCTTTCTACATTCA  50

seq1  TCTTTCAATTTGAGGTGTGAGGATGCTCCTTTAAAAGTTTCAATTTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAATTTGAGGTGTGAGGATGCTCCTTTAAAAGTTTCAATTTTACC  100

seq1  ATTTGGTGCACTGAGTCTTCTAGTTTTAGGAGTTACTCTTAGTTGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGCACTGAGTCTTCTAGTTTTAGGAGTTACTCTTAGTTGAAAAT  150

seq1  TAATTATATGCATGTATGGAAATACCCTAATGAAGTTACCCTGTACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATATGCATGTATGGAAATACCCTAATGAAGTTACCCTGTACAATT  200

seq1  AATTAGAAAATATAGAGCAAAAAAAATTCCAGTCCAATAAAAATTAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAATATAGAGCAAAAAAAATTCCAGTCCAATAAAAATTAGTAT  250

seq1  TGGGTTCAAGTTTTTATGTTTTTATCTCCTAAAAGATAGTTTTTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAAGTTTTTATGTTTTTATCTCCTAAAAGATAGTTTTTTTTATT  300

seq1  TTAAAATATAGGAAAATACATTCCTAATAAATAATAAAACCTTCTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATAGGAAAATACATTCCTAATAAATAATAAAACCTTCTTGAAA  350

seq1  TTTAATAATGAATAAACAATATAGGGCTTTTACATTCTTATTTCTGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATGAATAAACAATATAGGGCTTTTACATTCTTATTTCTGTGTA  400

seq1  TGCCTGCAGCACAATTGCTTCCTAACTCCTCAGTGCCCTTAAGTACTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAGCACAATTGCTTCCTAACTCCTCAGTGCCCTTAAGTACTAAG  450

seq1  TGTCCTTAAGTACTATGGCCCAAAGTAGACACAGTGTACCCAGAATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTAAGTACTATGGCCCAAAGTAGACACAGTGTACCCAGAATTTCT  500

seq1  TTGCCCATTTCTCAATGTCACCCAATTCTCTCAAAACCTTTTATAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATTTCTCAATGTCACCCAATTCTCTCAAAACCTTTTATAATCAT  550

seq1  AACACAAAGGCATAGATAAGGATTCGGAAGCACCTATTATGTTTCAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAGGCATAGATAAGGATTCGGAAGCACCTATTATGTTTCAGTTC  600

seq1  TGCTCTCCCTGGGGATATGGAAGCAAACATTCAACTCCTCTTTATCAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCCTGGGGATATGGAAGCAAACATTCAACTCCTCTTTATCAAGC  650

seq1  CCTAAAAAACTACAGTTCTACCAAAGTCAAACCTAGGAAGCCAATGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAAACTACAGTTCTACCAAAGTCAAACCTAGGAAGCCAATGAGTT  700

seq1  TATTGGGCTAATGAATGAGAGTTTATTTACAGGACTGTAGGTCATCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGCTAATGAATGAGAGTTTATTTACAGGACTGTAGGTCATCTCCA  750

seq1  AGAATTACACCAGGGGAAAGGCTCATGCCAGTATGGATGCAGACTTCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACACCAGGGGAAAGGCTCATGCCAGTATGGATGCAGACTTCATC  800

seq1  AGAGCTGCATAGATGGGGTCCTCCACTTCCATTCCTCTTTCATATGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCATAGATGGGGTCCTCCACTTCCATTCCTCTTTCATATGGTAT  850

seq1  GTATACTCTGGCATGTCTGAAGATCATAGACTCAGAGCAATTACTGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTCTGGCATGTCTGAAGATCATAGACTCAGAGCAATTACTGGGAA  900

seq1  TTTACATACACATGGTCACGAATAGCAAGAGTAAATGGTAGTAATCTCAT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTACATACACATGGTCACGAATAGC-AGAGTAAATGGTAGTAATCTCAT  949

seq1  GTGAGAGTCCAATTATGCTTCCCCCCT-CTCCTCTGAGGGAACACTTACA  999
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  GTGAGAGTCCAATTATGCTTCCCCCCTCCTCCTCTGAGGGAACACTTA-A  998

seq1  GACATCAGATATTCTCTTGCAAGCACTCATCAATGATCAGTGTTATACGC  1049
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  GACATCAGATATTCTCTTGC-AGCACTCATC-ATGATCAGTGTTATACGC  1046

seq1  AGAGGACACTATAACATTGAACTTGGAAGACAATGCAGAAAATAAATGTT  1099
       ||||| ||||| |||||| |||||| |||  |||||| |||||||||||
seq2  -GAGGA-ACTAT-ACATTG-ACTTGG-AGAACATGCAG-AAATAAATGTT  1090

seq1  AGAATGGAGA  1109
       |||||||||
seq2  -GAATGGAGA  1099