BAC Information

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BAC

Clone NameB6Ng01-144N08
Chromosome5 (Build37)
Map Location 75,847,585 - 75,998,351
singlet/doubletdoublet
Overlap geneLOC100039169, Kit
Upstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158
Downstream geneEG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144N08.bB6Ng01-144N08.g
ACCDH942403DH942404
length6591,070
definitionDH942403|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N08, 5' end.DH942404|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,847,585 - 75,848,243)(75,997,260 - 75,998,351)
sequence
gaattcaaatcctttaaagttgtcatgggtcaaaaccattaagtgctgga
ggcaaaggaaacccctgagaataggcatccatcagtattcacaccattct
gctggggtcccagaccatgaagacaaggattccatgatatatcagacaca
gccaggaagcgggggcaatgtctaccctgaagcaatgatgtttgcggatc
tgttggacatgctttgggctcagggtcatgttcaaatacagacagcagtc
cagcaggttgagggacaaggctggctggctgggagccagcagggagtggc
agagaccgtggagtgcttaccgcggagtgcaggaactataccaagaaagc
aagccaacgtgctagacagtggaatataaaagaagccagaaatgcaaatg
attgagaaaaatatttcatttttaaaagagaactacccccaggatgtagc
tcacttggtatagtgcttgcctagtttggataagaccctgggttgtcaac
accagcgccacataaacagaatgtggggatgcgtggctgtaatcctagca
ttttggaagtagggaggtgagggccagaagttcaaagtcatcgttagcct
cctagcacgtttgaggccaacctgggctctgtgagagagtgtgtgtgtgt
gtgtgtgta
gaattcctcactgtccgaagcagccagtgctgaagtgttgaaagaggcct
tttaactctgagctgaaggatctagaagctcatgctgactccacagaagt
gggagcccaagacacttgtgccccagggtgaccaactaagtctcacactg
cctgagtcatctgactttattcccaaacctgtccaggatgcatacagata
gtatattatggatcagttacatgtatgaagtatttgctgtacacacacac
acacacacacacacacacacacgtaaggggtgcctcactgggggagatct
actgttggatttaatgtgggtgaaacgtttagattagattaagattagag
ggggcctccaatttgcagcctgtattcagcacgcctgaggagaacttctt
gggaggaaaccgaattacaatccacagagcttgcatttggtgtacggagc
atgcacagcaaggacggctgctcagaacacctctgagaactcctctgaaa
ctcaaaagcaaccaaatctcaaagaaaagaatttggctccctactgaaga
tacagtatgttgtgtggcattttttttctttataaacaaaacaaaacaaa
ggtaatacctgtgtttgttacaatgtagcaattaacaaaacagaggcccg
gccaggaatcctcctggctggctgagccagtctctggccagcccctgcag
tagtggttggctcctgtttgttagctttgactcccagggccttattcttt
taaaaaaaaaaaaaaaaaaaagaaaaaaaaagaaaaaaaatccctgcaac
gcctggagttctagatggggttaaaagtgaggaagtcattttaaagtctt
ttcttctttgtaggtaaatataaggaaccagataaagaaatggttgggaa
ggaaacttacgaagtctagttttggaaaattaggccaggagaagacagat
ctctagactttgtagctcaaattttctcagtttctgtgctaagtacttta
tagtaaaagaagtctgacgccgaagttcctttgttttggcagactttcag
ctagcccaaggatagagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_75847585_75848243
seq2: B6Ng01-144N08.b_45_703

seq1  GAATTCAAATCCTTTAAAGTTGTCATGGGTCAAAACCATTAAGTGCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCTTTAAAGTTGTCATGGGTCAAAACCATTAAGTGCTGGA  50

seq1  GGCAAAGGAAACCCCTGAGAATAGGCATCCATCAGTATTCACACCATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGAAACCCCTGAGAATAGGCATCCATCAGTATTCACACCATTCT  100

seq1  GCTGGGGTCCCAGACCATGAAGACAAGGATTCCATGATATATCAGACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTCCCAGACCATGAAGACAAGGATTCCATGATATATCAGACACA  150

seq1  GCCAGGAAGCGGGGGCAATGTCTACCCTGAAGCAATGATGTTTGCGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCGGGGGCAATGTCTACCCTGAAGCAATGATGTTTGCGGATC  200

seq1  TGTTGGACATGCTTTGGGCTCAGGGTCATGTTCAAATACAGACAGCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGACATGCTTTGGGCTCAGGGTCATGTTCAAATACAGACAGCAGTC  250

seq1  CAGCAGGTTGAGGGACAAGGCTGGCTGGCTGGGAGCCAGCAGGGAGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTTGAGGGACAAGGCTGGCTGGCTGGGAGCCAGCAGGGAGTGGC  300

seq1  AGAGACCGTGGAGTGCTTACCGCGGAGTGCAGGAACTATACCAAGAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCGTGGAGTGCTTACCGCGGAGTGCAGGAACTATACCAAGAAAGC  350

seq1  AAGCCAACGTGCTAGACAGTGGAATATAAAAGAAGCCAGAAATGCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACGTGCTAGACAGTGGAATATAAAAGAAGCCAGAAATGCAAATG  400

seq1  ATTGAGAAAAATATTTCATTTTTAAAAGAGAACTACCCCCAGGATGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAAAATATTTCATTTTTAAAAGAGAACTACCCCCAGGATGTAGC  450

seq1  TCACTTGGTATAGTGCTTGCCTAGTTTGGATAAGACCCTGGGTTGTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGTATAGTGCTTGCCTAGTTTGGATAAGACCCTGGGTTGTCAAC  500

seq1  ACCAGCGCCACATAAACAGAATGTGGGGATGCGTGGCTGTAATCCTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCGCCACATAAACAGAATGTGGGGATGCGTGGCTGTAATCCTAGCA  550

seq1  TTTTGGAAGTAGGGAGGTGAGGGCCAGAAGTTCAAAGTCATCGTTAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAGTAGGGAGGTGAGGGCCAGAAGTTCAAAGTCATCGTTAGCCT  600

seq1  CCTAGCACGTTTGAGGCCAACCTGGGCTCTGTGAGAGAGTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACGTTTGAGGCCAACCTGGGCTCTGTGAGAGAGTGTGTGTGTGT  650

seq1  GTGTGTGTA  659
      |||||||||
seq2  GTGTGTGTA  659

seq1: chr5_75997260_75998351
seq2: B6Ng01-144N08.g_66_1135 (reverse)

seq1  CCACTCTATTCCTATGGGGCTAGGCTGTAAAAGTCTGTCAAAAACAAAGT  50
      ||||||||| |   | |||||| ||||  |||||||| | ||||||||| 
seq2  CCACTCTATCC---TTGGGCTA-GCTG--AAAGTCTG-CCAAAACAAAG-  42

seq1  GACACTCCGGCCGTCAGACTTTCTTTTTACTATAAATGTAACTAAGCACA  100
      || ||| ||| ||||||||||   |||||||||||| || ||| ||||||
seq2  GA-ACTTCGG-CGTCAGACTT--CTTTTACTATAAA-GT-ACTTAGCACA  86

seq1  GAAACTGAGGAACATTTGAGCTACAAGGTCTAGAGGCTCTGTCTTCTCCT  150
      |||||||| ||| ||||||||||||| ||||||| | |||||||||||||
seq2  GAAACTGA-GAAAATTTGAGCTACAAAGTCTAGA-GATCTGTCTTCTCCT  134

seq1  GGCCTACTTCTCCAAAACTAGACTTCGTAGGTTTCCTTCCCAACCATTTC  200
      |||||| || ||||||||||||||||||| ||||||||||||||||||||
seq2  GGCCTAATTTTCCAAAACTAGACTTCGTAAGTTTCCTTCCCAACCATTTC  184

seq1  TTTATCTGGTTCCTTATATTTACCTACAAAGAAGGAAAGACTTTAAAATG  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTATCTGGTTCCTTATATTTACCTACAAAGAAGAAAAGACTTTAAAATG  234

seq1  ACTTCCTCACTTTTAACCCCATCTAGAACTCCAGGCGTTGCAGGGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCACTTTTAACCCCATCTAGAACTCCAGGCGTTGCAGGGATTTT  284

seq1  TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAATA  350
      |      ||| ||||||||| |||||||||||||||||||||||||||||
seq2  T------TTTCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTAAAAGAATA  328

seq1  AGGCCCTGGGAGTCAAAGCTAACAAACAGGAGCCAACCACTACTGCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGGGAGTCAAAGCTAACAAACAGGAGCCAACCACTACTGCAGGG  378

seq1  GCTGGCCAGAGACTGGCTCAGCCAGCCAGGAGGATTCCTGGCCGGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAGAGACTGGCTCAGCCAGCCAGGAGGATTCCTGGCCGGGCCTC  428

seq1  TGTTTTGTTAATTGCTACATTGTAACAAACACAGGTATTACCTTTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTAATTGCTACATTGTAACAAACACAGGTATTACCTTTGTTTT  478

seq1  GTTTTGTTTATAAAGAAAAAAAATGCCACACAACATACTGTATCTTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTATAAAGAAAAAAAATGCCACACAACATACTGTATCTTCAGT  528

seq1  AGGGAGCCAAATTCTTTTCTTTGAGATTTGGTTGCTTTTGAGTTTCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCAAATTCTTTTCTTTGAGATTTGGTTGCTTTTGAGTTTCAGAG  578

seq1  GAGTTCTCAGAGGTGTTCTGAGCAGCCGTCCTTGCTGTGCATGCTCCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCAGAGGTGTTCTGAGCAGCCGTCCTTGCTGTGCATGCTCCGTA  628

seq1  CACCAAATGCAAGCTCTGTGGATTGTAATTCGGTTTCCTCCCAAGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATGCAAGCTCTGTGGATTGTAATTCGGTTTCCTCCCAAGAAGTT  678

seq1  CTCCTCAGGCGTGCTGAATACAGGCTGCAAATTGGAGGCCCCCTCTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGCGTGCTGAATACAGGCTGCAAATTGGAGGCCCCCTCTAATC  728

seq1  TTAATCTAATCTAAACGTTTCACCCACATTAAATCCAACAGTAGATCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTAATCTAAACGTTTCACCCACATTAAATCCAACAGTAGATCTCC  778

seq1  CCCAGTGAGGCACCCCTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGAGGCACCCCTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  828

seq1  GTACAGCAAATACTTCATACATGTAACTGATCCATAATATACTATCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCAAATACTTCATACATGTAACTGATCCATAATATACTATCTGTA  878

seq1  TGCATCCTGGACAGGTTTGGGAATAAAGTCAGATGACTCAGGCAGTGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTGGACAGGTTTGGGAATAAAGTCAGATGACTCAGGCAGTGTGA  928

seq1  GACTTAGTTGGTCACCCTGGGGCACAAGTGTCTTGGGCTCCCACTTCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGTTGGTCACCCTGGGGCACAAGTGTCTTGGGCTCCCACTTCTGT  978

seq1  GGAGTCAGCATGAGCTTCTAGATCCTTCAGCTCAGAGTTAAAAGGCCTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGCATGAGCTTCTAGATCCTTCAGCTCAGAGTTAAAAGGCCTCT  1028

seq1  TTCAACACTTCAGCACTGGCTGCTTCGGACAGTGAGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACTTCAGCACTGGCTGCTTCGGACAGTGAGGAATTC  1070