BAC Information

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BAC

Clone NameB6Ng01-144N20
Chromosome5 (Build37)
Map Location 87,870,094 - 87,996,346
singlet/doubletdoublet
Overlap geneUgt2a2, Ugt2a1, Sult1b1, Sult1d1
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38
Downstream geneSult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144N20.bB6Ng01-144N20.g
ACCDH942427DH942428
length1,151924
definitionDH942427|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N20, 5' end.DH942428|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,995,179 - 87,996,346)(87,870,094 - 87,870,651)
sequence
gaattctctttaaagagtaatacaactcctcagtttagctagaatttaaa
gctagatttttgaggaaataacagaatccctcagctcatgctaaattgga
ggcaggagtatgattaatggtagatttcaagttcttcccttacccataac
aggtaagagaaaaaagagaggtgccttccttcatctagaatcctgttgaa
aaaagtaaaacagggtcatcatcatgagtgtttcaaagtttaggaaaaga
tgtgcaatgcatcctcaatagcctaaccttaagcttattttctttctttt
atccttttgttgttgtttgttcttgatattttattttagttctccctttc
cttgcttcccaccaaaccctcccttatactcatccctgctgtccttcaaa
tccactgccactcattctaccaattgttattgcatgtatttgtatgacta
ggtaagtcaatataatgttacttgcatgtatgtatttagggctgaccagt
tgacactggacaatcactgtgatcttcccagggaaggcccacttctctca
ttcctagttttactcaacagcctatagttctttgtgtagggatgaggacc
tgcgagcctttccctgtgcatttggcatgttcattggtgttttatttaag
atttctattttctctgttaaatcttgctcataacccacatatacattttc
tcttaatttgtagcctgtcaggtctaatttaaacaatttaccagtttacc
ttgaaatttaaaggaagggcattgtaatttaggccatcttttgttattga
tctaaggagaactatgtcattctgggacttagaatggactgatagcccca
tttcttacagtgttctcctaaattcaagtgttgcaccttttctgtacatc
ttgaaaatatttactttagcatatgctattgatatacaaatgagtatagt
aatatgctgtgtatgatggtatggatgaaaataatgtttatctgtccagt
tatttttcttgcctgataatacacacttaatctgattcatatctctgaac
tttgaaatgatctttactatggaataggaacattttaaattgataatgat
acctttgttaatatagtctccaaatgataacaacctgagttcttcaggag
g
gaattcaaggttcaattctcaaatagagactttaaacagaacaagacagg
tgagagtatcgagagaggcaaacataagaatctaactaacagaaacaaag
accactcaccttcatcagaacacagcaattctacccgacccagtcctggg
caccccaacacacccgaaaagctagacccagatttaaaagcatatctcat
gatgatggtagaggacatcaagaaggactttaataactcacttaaagaaa
tacaagagaacacagttaaacaggtagaagactttaaagaggaaacacaa
aaatcccttaaagaattgcaggaaaatacaaccaaacaggtgatggaatt
gaataaaaccatccaagacctaaaaagggaagtagacacaataaagaaaa
cccaaagtgaggcaactttggagatagaaaccctaggaaagaaatctgga
accatagatgcaagcatcagcaacagaatacaagagatggaagagagaat
ctcaggtgtagaagattccatagagaacatcggcacaacaatcaaagaaa
atacaaaacgcaaaaagatcctaactcaaaaaatccaggaaatccaggac
acaatgagaagaccaaacctacagataataggagttgatgagaatgaaga
ttttcaacttaaagggccagcaaatatcttcaacaaaattatagaaaaaa
attcccaaacctaaaaaagacatgcctataaacatacaagaagcctacag
aactccaaatagactggaccagaaaagaaattcctcccgacacataataa
tcagaacaacaaatgcactaaataaagatagaattttaaaagcagtaagg
gaaaaaggtcaagtaacatataaaggcaacctatcagaattacaccagac
ttttcaccagagaatatgaaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87995179_87996346
seq2: B6Ng01-144N20.b_46_1196 (reverse)

seq1  CCTCCTGAAGACATCCAGTTTGTTATCCATTTGGGGAGACTATATTTTAA  50
      ||||||||||| |  ||| ||||||| |||||  ||||||||||  ||||
seq2  CCTCCTGAAGA-ACTCAGGTTGTTAT-CATTT--GGAGACTATA--TTAA  44

seq1  CAAAGGGTATCATTTATCAATTTTAAAATGTTCCTAATTCAATAGT-AAG  99
      |||| ||||||| ||||||| |||||||||||||| |||| ||||| |||
seq2  CAAA-GGTATCA-TTATCAA-TTTAAAATGTTCCT-ATTCCATAGTAAAG  90

seq1  ATCATTTTTCAAAGTTCAGAGATATGAATTCAGATTAAGTGTGTTATTAT  149
      ||||  |||||||||||||||||||||| |||||||||||||| ||||||
seq2  ATCA--TTTCAAAGTTCAGAGATATGAA-TCAGATTAAGTGTG-TATTAT  136

seq1  CAAGGCAAGAAAATAAACTGGACAGATAAACATTTATTTTCATCCATACC  199
      | |||||||||||  ||||||||||||||||| |||||||||||||||||
seq2  C-AGGCAAGAAAAATAACTGGACAGATAAACA-TTATTTTCATCCATACC  184

seq1  ATTCATACACAGCATATTACTATACCTCATTTGTATATCAATAGCATATG  249
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  A-TCATACACAGCATATTACTATA-CTCATTTGTATATCAATAGCATATG  232

seq1  CTAAAGTAAATATTTTCAAGATGTACAGAAAAGGTGCAACACTTGAATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAAATATTTTCAAGATGTACAGAAAAGGTGCAACACTTGAATTT  282

seq1  AGGAGAACACTGTAAGAAATGGGGCTATCAGTCCATTCTAAGTCCCAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACACTGTAAGAAATGGGGCTATCAGTCCATTCTAAGTCCCAGAA  332

seq1  TGACATAGTTCTCCTTAGATCAATAACAAAAGATGGCCTAAATTACAATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGTTCTCCTTAGATCAATAACAAAAGATGGCCTAAATTACAATG  382

seq1  CCCTTCCTTTAAATTTCAAGGTAAACTGGTAAATTGTTTAAATTAGACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTTAAATTTCAAGGTAAACTGGTAAATTGTTTAAATTAGACCT  432

seq1  GACAGGCTACAAATTAAGAGAAAATGTATATGTGGGTTATGAGCAAGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCTACAAATTAAGAGAAAATGTATATGTGGGTTATGAGCAAGATT  482

seq1  TAACAGAGAAAATAGAAATCTTAAATAAAACACCAATGAACATGCCAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGAAAATAGAAATCTTAAATAAAACACCAATGAACATGCCAAAT  532

seq1  GCACAGGGAAAGGCTCGCAGGTCCTCATCCCTACACAAAGAACTATAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGAAAGGCTCGCAGGTCCTCATCCCTACACAAAGAACTATAGGC  582

seq1  TGTTGAGTAAAACTAGGAATGAGAGAAGTGGGCCTTCCCTGGGAAGATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTAAAACTAGGAATGAGAGAAGTGGGCCTTCCCTGGGAAGATCA  632

seq1  CAGTGATTGTCCAGTGTCAACTGGTCAGCCCTAAATACATACATGCAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTGTCCAGTGTCAACTGGTCAGCCCTAAATACATACATGCAAGT  682

seq1  AACATTATATTGACTTACCTAGTCATACAAATACATGCAATAACAATTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATATTGACTTACCTAGTCATACAAATACATGCAATAACAATTGG  732

seq1  TAGAATGAGTGGCAGTGGATTTGAAGGACAGCAGGGATGAGTATAAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGTGGCAGTGGATTTGAAGGACAGCAGGGATGAGTATAAGGGA  782

seq1  GGGTTTGGTGGGAAGCAAGGAAAGGGAGAACTAAAATAAAATATCAAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGTGGGAAGCAAGGAAAGGGAGAACTAAAATAAAATATCAAGAA  832

seq1  CAAACAACAACAAAAGGATAAAAGAAAGAAAATAAGCTTAAGGTTAGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAACAAAAGGATAAAAGAAAGAAAATAAGCTTAAGGTTAGGCT  882

seq1  ATTGAGGATGCATTGCACATCTTTTCCTAAACTTTGAAACACTCATGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGATGCATTGCACATCTTTTCCTAAACTTTGAAACACTCATGATG  932

seq1  ATGACCCTGTTTTACTTTTTTCAACAGGATTCTAGATGAAGGAAGGCACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTGTTTTACTTTTTTCAACAGGATTCTAGATGAAGGAAGGCACC  982

seq1  TCTCTTTTTTCTCTTACCTGTTATGGGTAAGGGAAGAACTTGAAATCTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTTCTCTTACCTGTTATGGGTAAGGGAAGAACTTGAAATCTAC  1032

seq1  CATTAATCATACTCCTGCCTCCAATTTAGCATGAGCTGAGGGATTCTGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATCATACTCCTGCCTCCAATTTAGCATGAGCTGAGGGATTCTGTT  1082

seq1  ATTTCCTCAAAAATCTAGCTTTAAATTCTAGCTAAACTGAGGAGTTGTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCAAAAATCTAGCTTTAAATTCTAGCTAAACTGAGGAGTTGTAT  1132

seq1  TACTCTTTAAAGAGAATTC  1168
      |||||||||||||||||||
seq2  TACTCTTTAAAGAGAATTC  1151

seq1: chr5_87870094_87870651
seq2: B6Ng01-144N20.g_69_626

seq1  GAATTCAAGGTTCAATTCTCAAATAGAGACTTTAAACAGAACAAGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTTCAATTCTCAAATAGAGACTTTAAACAGAACAAGACAGG  50

seq1  TGAGAGTATCGAGAGAGGCAAACATAAGAATCTAACTAACAGAAACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTATCGAGAGAGGCAAACATAAGAATCTAACTAACAGAAACAAAG  100

seq1  ACCACTCACCTTCATCAGAACACAGCAATTCTACCCGACCCAGTCCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCACCTTCATCAGAACACAGCAATTCTACCCGACCCAGTCCTGGG  150

seq1  CACCCCAACACACCCGAAAAGCTAGACCCAGATTTAAAAGCATATCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAACACACCCGAAAAGCTAGACCCAGATTTAAAAGCATATCTCAT  200

seq1  GATGATGGTAGAGGACATCAAGAAGGACTTTAATAACTCACTTAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGTAGAGGACATCAAGAAGGACTTTAATAACTCACTTAAAGAAA  250

seq1  TACAAGAGAACACAGTTAAACAGGTAGAAGACTTTAAAGAGGAAACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGAACACAGTTAAACAGGTAGAAGACTTTAAAGAGGAAACACAA  300

seq1  AAATCCCTTAAAGAATTGCAGGAAAATACAACCAAACAGGTGATGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTTAAAGAATTGCAGGAAAATACAACCAAACAGGTGATGGAATT  350

seq1  GAATAAAACCATCCAAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACCATCCAAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAA  400

seq1  CCCAAAGTGAGGCAACTTTGGAGATAGAAACCCTAGGAAAGAAATCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTGAGGCAACTTTGGAGATAGAAACCCTAGGAAAGAAATCTGGA  450

seq1  ACCATAGATGCAAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGATGCAAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAAT  500

seq1  CTCAGGTGTAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGTAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAA  550

seq1  ATACAAAA  558
      ||||||||
seq2  ATACAAAA  558