BAC Information

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BAC

Clone NameB6Ng01-145F16
Chromosome5 (Build37)
Map Location 12,151,363 - 12,301,836
singlet/doubletdoublet
Overlap geneLOC100041626
Upstream geneEG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneEG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145F16.bB6Ng01-145F16.g
ACCDH942779DH942780
length1,0781,099
definitionDH942779|Mus musculus domesticus DNA, BAC clone: B6Ng01-145F16, 5' end.DH942780|Mus musculus domesticus DNA, BAC clone: B6Ng01-145F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,300,748 - 12,301,836)(12,151,363 - 12,152,480)
sequence
gaattctcattctgacaagataatgattgtaataaaaactaaaatagttg
agatgataattgatttccagttttacttctaaatcttaatttctataata
tttttttcatttggttctttacaaatgttatttaacatatagtaattttc
actgataatttatttttaaagctgagatgagaataactgatgggtttagg
gtaaagggtgtatgtgaaagaaaatatccttgttcacagaaaacaaagac
aacaagtattctcttcaaaactctgttcactgaagtacctttaaaattga
atttgtggttaaattttctgagtctgaaatagtgctgttttacatattca
aatcttaaaacatttaagatttaatatttcaatattaataatatgagata
atagcattactaacgttcaatcttttaccatttttctggtggagacaaat
ctgaaacaaatcagcatcaataatttatccaagactgttccatctgaaga
ctttcaaattcattaatgattctctgaactatgagtctacattgtaaatt
ctagaaaagagtagatctgggtttgaacttacagaacacatgtacttaag
gtgcaaaagtaaaattccaggaaacatcataaacaaggtagactgataaa
agaaaattattaaaataccaagcagctgataactgtgagctgaaaatata
aaatcttcttgttctgagagagggaattctttcccaagaccaacattttt
caaagtccttattttaaaatattgagctgattaaaagcatttaagacaac
atctatgctaataggtcaacaattactctcatattttaagtctttgttgg
aaaggatgtgattatatttcttatcccagttcctctcagatcagcaatgc
cttccaactcacccagcagagtaggtcctcccctagggtctttttaactg
gttgttggccctgatatggtgtcaggggtgaggtccaccttgtagaggta
ggctttacgtacatcatgactgtggatgattctatgggatgatcgcatac
agtagatggataatcggctttcatattt
gaattcactcttttatttttaattattctctctatttttgacattaaaaa
aaaatgtctcactcacaaggctcaaggaacagtgcagaaaaaggggcaca
aagattgttaaaagccagatcaggaagtatgctgtgagattatgtcctct
agtaacattggaagctacaactaaagtttcaccaacataataggataaat
ttttcattttctaggagatctcatattttgtaataacaacttttctagat
tccaatcatgaatttcaagggtccctttcctcttctttctcattaatatt
tcttgaaaaattatatatgaaggaattccttagccatgtagatgaatctg
agcactggaaacctgccacatctgttcccagagcatgttcttagacacta
ctccaaggaagaacgcttatcatttaaatttattttttaccttttgatac
tttatttcaaactacagaagacctataggtatcattctgtgacctgagaa
catctacctgatgagaacaagacaattctgtttgtgggaggaaatgtcgt
ataactctacatgtgtggaacaatgaacacttagcagacaatctaacata
cttgtggtttctaaaagttttctctgtgcattcaccttccaacagttcat
tctggtttggttgtgggacgcctgacttgccagcaaaacagatgccacaa
caggatccttctgcaacacgtttattgggagagcatggactgcgtacgcg
aaggaccccgagccccagaaatggtgctgcttatataggactaggagtga
cttgtccatacctgattggttatgctaccagtatctcattaatatgcgtc
gggccaggcagtgactcggcaaaaaactcttatgcacatgcgcacactgg
ttgtttacccataatcatgggtggtgccagtggtagccagcgccatcttt
atgcgtttgcagcttcccacatttggttatacatctacattcatcaacac
aattctatattcaataatgcatcaatagctgttcaaactatcttctcagt
agaggctgctgataaggactgaggcctataggggtcatttggttctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12300748_12301836
seq2: B6Ng01-145F16.b_46_1123 (reverse)

seq1  AAATAATTGAAAGGCGATATATCCATTCCTACTGTAATGCGATCAATCCT  50
      |||||  |||||| |||| |||||||  ||||||| |||||||| |||| 
seq2  AAATA--TGAAAGCCGAT-TATCCAT--CTACTGT-ATGCGATC-ATCCC  43

seq1  ATTAGAATCAT-CACAGTTCATGATTGTACGTTAAAGCCTA-CTCTACAA  98
      | ||||||||| ||||| |||||| |||||| ||||||||| ||||||||
seq2  A-TAGAATCATCCACAG-TCATGA-TGTACG-TAAAGCCTACCTCTACAA  89

seq1  GGTGGACCTCACACCTGACACCAATATCAGGGCCAACAACCAGTTAAAAA  148
      |||||||||||| ||||||||| |||||||||||||||||||||| ||||
seq2  GGTGGACCTCACCCCTGACACC-ATATCAGGGCCAACAACCAGTT-AAAA  137

seq1  AGACCCTAGGGGAGGACCTACTCTGCTGGGTGAGTTGGAAGGCATTGCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAGGGGAGGACCTACTCTGCTGGGTGAGTTGGAAGGCATTGCTG  187

seq1  ATCTGGGAGGAACTGGGATAAGAAATATAATCACATCCTTTCCAACAAAG  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAGGAACTGGGATAAGAAATATAATCACATCCTTTCCAACAAAG  237

seq1  ACTTAAAATATGAGAGTAATTGTTGACCTATTAGCATAGATGTTGTCTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAATATGAGAGTAATTGTTGACCTATTAGCATAGATGTTGTCTTA  287

seq1  AATGCTTTTAATCAGCTCAATATTTTAAAATAAGGACTTTGAAAAATGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTTAATCAGCTCAATATTTTAAAATAAGGACTTTGAAAAATGTT  337

seq1  GGTCTTGGGAAAGAATTCCCTCTCTCAGAACAAGAAGATTTTATATTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGGAAAGAATTCCCTCTCTCAGAACAAGAAGATTTTATATTTTC  387

seq1  AGCTCACAGTTATCAGCTGCTTGGTATTTTAATAATTTTCTTTTATCAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAGTTATCAGCTGCTTGGTATTTTAATAATTTTCTTTTATCAGT  437

seq1  CTACCTTGTTTATGATGTTTCCTGGAATTTTACTTTTGCACCTTAAGTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGTTTATGATGTTTCCTGGAATTTTACTTTTGCACCTTAAGTAC  487

seq1  ATGTGTTCTGTAAGTTCAAACCCAGATCTACTCTTTTCTAGAATTTACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCTGTAAGTTCAAACCCAGATCTACTCTTTTCTAGAATTTACAA  537

seq1  TGTAGACTCATAGTTCAGAGAATCATTAATGAATTTGAAAGTCTTCAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTCATAGTTCAGAGAATCATTAATGAATTTGAAAGTCTTCAGAT  587

seq1  GGAACAGTCTTGGATAAATTATTGATGCTGATTTGTTTCAGATTTGTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTCTTGGATAAATTATTGATGCTGATTTGTTTCAGATTTGTCTC  637

seq1  CACCAGAAAAATGGTAAAAGATTGAACGTTAGTAATGCTATTATCTCATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAAAATGGTAAAAGATTGAACGTTAGTAATGCTATTATCTCATA  687

seq1  TTATTAATATTGAAATATTAAATCTTAAATGTTTTAAGATTTGAATATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATATTGAAATATTAAATCTTAAATGTTTTAAGATTTGAATATGT  737

seq1  AAAACAGCACTATTTCAGACTCAGAAAATTTAACCACAAATTCAATTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCACTATTTCAGACTCAGAAAATTTAACCACAAATTCAATTTTA  787

seq1  AAGGTACTTCAGTGAACAGAGTTTTGAAGAGAATACTTGTTGTCTTTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACTTCAGTGAACAGAGTTTTGAAGAGAATACTTGTTGTCTTTGTT  837

seq1  TTCTGTGAACAAGGATATTTTCTTTCACATACACCCTTTACCCTAAACCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAACAAGGATATTTTCTTTCACATACACCCTTTACCCTAAACCC  887

seq1  ATCAGTTATTCTCATCTCAGCTTTAAAAATAAATTATCAGTGAAAATTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTATTCTCATCTCAGCTTTAAAAATAAATTATCAGTGAAAATTAC  937

seq1  TATATGTTAAATAACATTTGTAAAGAACCAAATGAAAAAAATATTATAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTAAATAACATTTGTAAAGAACCAAATGAAAAAAATATTATAGA  987

seq1  AATTAAGATTTAGAAGTAAAACTGGAAATCAATTATCATCTCAACTATTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATTTAGAAGTAAAACTGGAAATCAATTATCATCTCAACTATTT  1037

seq1  TAGTTTTTATTACAATCATTATCTTGTCAGAATGAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTATTACAATCATTATCTTGTCAGAATGAGAATTC  1078

seq1: chr5_12151363_12152480
seq2: B6Ng01-145F16.g_68_1166

seq1  GAATTCACTCTTTTATTTTTAATTATTCTCTCTATTTTTGACATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTTTATTTTTAATTATTCTCTCTATTTTTGACATTAAAAA  50

seq1  AAAATGTCTCACTCACAAGGCTCAAGGAACAGTGCAGAAAAAGGGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTCACTCACAAGGCTCAAGGAACAGTGCAGAAAAAGGGGCACA  100

seq1  AAGATTGTTAAAAGCCAGATCAGGAAGTATGCTGTGAGATTATGTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTTAAAAGCCAGATCAGGAAGTATGCTGTGAGATTATGTCCTCT  150

seq1  AGTAACATTGGAAGCTACAACTAAAGTTTCACCAACATAATAGGATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATTGGAAGCTACAACTAAAGTTTCACCAACATAATAGGATAAAT  200

seq1  TTTTCATTTTCTAGGAGATCTCATATTTTGTAATAACAACTTTTCTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTCTAGGAGATCTCATATTTTGTAATAACAACTTTTCTAGAT  250

seq1  TCCAATCATGAATTTCAAGGGTCCCTTTCCTCTTCTTTCTCATTAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCATGAATTTCAAGGGTCCCTTTCCTCTTCTTTCTCATTAATATT  300

seq1  TCTTGAAAAATTATATATGAAGGAATTCCTTAGCCATGTAGATGAATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAATTATATATGAAGGAATTCCTTAGCCATGTAGATGAATCTG  350

seq1  AGCACTGGAAACCTGCCACATCTGTTCCCAGAGCATGTTCTTAGACACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGAAACCTGCCACATCTGTTCCCAGAGCATGTTCTTAGACACTA  400

seq1  CTCCAAGGAAGAACGCTTATCATTTAAATTTATTTTTTACCTTTTGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGAAGAACGCTTATCATTTAAATTTATTTTTTACCTTTTGATAC  450

seq1  TTTATTTCAAACTACAGAAGACCTATAGGTATCATTCTGTGACCTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCAAACTACAGAAGACCTATAGGTATCATTCTGTGACCTGAGAA  500

seq1  CATCTACCTGATGAGAACAAGACAATTCTGTTTGTGGGAGGAAATGTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCTGATGAGAACAAGACAATTCTGTTTGTGGGAGGAAATGTCGT  550

seq1  ATAACTCTACATGTGTGGAACAATGAACACTTAGCAGACAATCTAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCTACATGTGTGGAACAATGAACACTTAGCAGACAATCTAACATA  600

seq1  CTTGTGGTTTCTAAAAGTTTTCTCTGTGCATTCACCTTCCAACAGTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTTTCTAAAAGTTTTCTCTGTGCATTCACCTTCCAACAGTTCAT  650

seq1  TCTGGTTTGGTTGTGGGACGCCTGACTTGCCAGCAAAACAGATGCCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTGGTTGTGGGACGCCTGACTTGCCAGCAAAACAGATGCCACAA  700

seq1  CAGGATCCTTCTGCAACACGTTTATTGGGAGAGCATGGACTGCGTACGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCTTCTGCAACACGTTTATTGGGAGAGCATGGACTGCGTACGCG  750

seq1  AAGGACCCCGAGCCCCAGAAATGGTGCTGCTTATATAGGACTAGGAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCCGAGCCCCAGAAATGGTGCTGCTTATATAGGACTAGGAGTGA  800

seq1  CTTGTCCATACCTGATTGGTTATGCTACCAGTATCTCATTAATATGCGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCATACCTGATTGGTTATGCTACCAGTATCTCATTAATATGCGTC  850

seq1  GGGCCAGGCAGTGACTCGGCAAAAAACTCTTATGCACATGCGCACACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGCAGTGACTCGGCAAAAAACTCTTATGCACATGCGCACACTGG  900

seq1  TTGTTTACCCATAATCATGGGTGGTGGCCAGTGGTAGCCAGCGCCATCTT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGTTTACCCATAATCATGGGTGGT-GCCAGTGGTAGCCAGCGCCATCTT  949

seq1  GTAATGGCGTTTGCAGCTTCCCACATTTGGTTAATACATTCTACATTCCA  1000
       ||   |||||||||||||||||||||||||| ||||| |||||||||  
seq2  -TA--TGCGTTTGCAGCTTCCCACATTTGGTT-ATACA-TCTACATTC--  992

seq1  TTCAACACAATTCTATATTCCAATAAATGCATCAAATAGCTGTTTCAAAC  1050
       |||||||||||||||||| |||| |||||||| |||||||| |||||||
seq2  ATCAACACAATTCTATATT-CAAT-AATGCATC-AATAGCTG-TTCAAAC  1038

seq1  TATCTTCTCAGTATGAGGCTGCTGATTAAGGGACTGAGGGTCTATTAGGG  1100
      ||||||||||||| ||||||||||||  | ||||||| || ||| |||||
seq2  TATCTTCTCAGTA-GAGGCTGCTGAT--AAGGACTGA-GGCCTA-TAGGG  1083

seq1  GAGTCATTTGGTTCTGTT  1118
        ||||||||||||||||
seq2  --GTCATTTGGTTCTGTT  1099