BAC Information

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BAC

Clone NameB6Ng01-145H18
Chromosome5 (Build37)12 (Build37)
Map Location 6,824,510 - 6,824,78556,131,122 - 56,131,202
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145H18.bB6Ng01-145H18.g
ACCDH942875DH942876
length276920
definitionDH942875|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H18, 5' end.DH942876|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,824,510 - 6,824,785)(56,131,122 - 56,131,202)
sequence
actttatcttcccatatcattatcctgagtgacaacctctattttcactc
acctgtcaatagacaatcacaaaaccacaatacatcctaaatcaattttt
taaataagtattttcaagctggatatagtggcatatattgtaatcctagt
aatttgaattctcaaacaggagaatcataatttccaggacaacgacatag
tgcatctccatcaaaagaaagaaagaaaaaagaggatcaggtagaagaat
gaggaggaggaggaggaggaggagga
gaattctcggttcagatttacaccccatttttattattttatttatttat
ttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattagcttcttgag
ttctatatgtattttcgatattagccctctatcagatgtggttagtgaag
atttttttccccaatatgtaggttgcctatttgtcttatcgactatatct
tttgccttacagaagttttccagttttatgaggtcccatttatcaattct
tgatcttaaagcatgagccactaagttctgtttaggaaatctccccctgt
gccaatgagttcaaggctctttaccactttctcttctattagattcaggg
tatctggttttatgttgaggtccttgatccacttggatttgacctttgtg
caagatgaccaatatgagtatttttccatttttttacatatacaattaac
tcaaataaataagtagaatttctttatacaaatgataaatagtctgagaa
agaaattagtgatacagcactctttacaagagccacaaagaatatcaaat
atcttggggtaattctaaccaaacaagtgtatgacaataacttcaggtct
ctccagaaagaaatcaagtacgatagaaaatggagagatctcccttgctc
actgaaaggcattctacaggttcaatgcaatccccatcaaaatcccaaca
caattcttcatggggaagagcaattatcaaattcaccaggaaaggggaaa
aacccagaatagtgaaaataatcctttctttctttctttctttctttctt
tctttcttttctttctttttttctttttttctttccttccttccttcctt
ccttctttccttcccttcctccttccctcccctctctctcctttcttcgt
ccttttgtgtttggtttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6824510_6824785
seq2: B6Ng01-145H18.b_51_326 (reverse)

seq1  TCCTCCTCCTCCTCCTCCTCCTCCTCATTCTTCTACCTGATCCTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCCTCCTCCTCCTCATTCTTCTACCTGATCCTCTTTTT  50

seq1  TCTTTCTTTCTTTTGATGGAGATGCACTATGTCGTTGTCCTGGAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTGATGGAGATGCACTATGTCGTTGTCCTGGAAATTAT  100

seq1  GATTCTCCTGTTTGAGAATTCAAATTACTAGGATTACAATATATGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCTGTTTGAGAATTCAAATTACTAGGATTACAATATATGCCACT  150

seq1  ATATCCAGCTTGAAAATACTTATTTAAAAAATTGATTTAGGATGTATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGCTTGAAAATACTTATTTAAAAAATTGATTTAGGATGTATTGT  200

seq1  GGTTTTGTGATTGTCTATTGACAGGTGAGTGAAAATAGAGGTTGTCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTGATTGTCTATTGACAGGTGAGTGAAAATAGAGGTTGTCACTC  250

seq1  AGGATAATGATATGGGAAGATAAAGT  276
      ||||||||||||||||||||||||||
seq2  AGGATAATGATATGGGAAGATAAAGT  276

seq1: chr12_56131122_56131202
seq2: B6Ng01-145H18.g_94_150 (reverse)

seq1  CACACACACACATGCATATATACACACACGCATGCATATATACACACACA  50
        |||||||||          ||||||||            |||||||||
seq2  --CACACACAC----------ACACACAC------------ACACACACA  26

seq1  CACGATAAATAAATAA--AATATAACTTAAAAA  81
      ||| ||||||||||||  || ||||  ||||||
seq2  CACAATAAATAAATAAATAAAATAA--TAAAAA  57