BAC Information

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BAC

Clone NameB6Ng01-145L20
Chromosome5 (Build37)
Map Location 90,653,724 - 90,813,553
singlet/doubletdoublet
Overlap geneAnkrd17
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145L20.bB6Ng01-145L20.g
ACCDH943062DH943063
length9591,096
definitionDH943062|Mus musculus domesticus DNA, BAC clone: B6Ng01-145L20, 5' end.DH943063|Mus musculus domesticus DNA, BAC clone: B6Ng01-145L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,812,596 - 90,813,553)(90,653,724 - 90,654,826)
sequence
gaattctttgtttacctctgtaccccattttaatagggttatttggtttt
ctggaggggtttattttattgtatttgggtttgttgttgttgtttgtttg
tttgtttgtagagacaggatcttactgtgtatctctggctgttctggagc
tcacttacatagacactccaaccactcactctaggccctgttctattttt
gggaaaggggattggatcttctattctgatcttttgcttggtatgttgcc
ttatgtgtcagaatcattctgtttttgtcactatggctctgtagaatact
ttgagattgggtattgcgatccagtgtttttttttctgcttaggattgtg
ttagctatttagagtttctgtgtttccatgtgagttttgaaatttgtttc
taactctgtgaaaaaaaaataaatggcattaggactttaatgggatttca
ctgaatctgtagttagcttttagcttatttcattatattaattctgccta
tccatgaacaaaggagagcttcttaccttctagtgtcttcattaattttt
ctttcaacatcttaaagttttctgtgtaaagaactttcacctccttggtt
aagttttatttctaggtatttttttttataactaatgtgagagagatttt
tcttccttcattttcttagaaagaaaatggtcacagttatagagttgata
agtcatatgtcttagtcatcaatcttacagggaaattagctgtatagtaa
aagttttatgtacccttttttcaatcagaatatatagacacaattcccat
tggttttctttatgcatagtacaccactatctttgatacaagccagatcc
tgtaggagatccaaaatgacttcaaagcaggtatggacatccctgggata
caaagtttctaccgtatgatagctgcaacacctggcaccacacatgtctc
aatgttgat
gaattccatcaacagcacaattttgcttcaacggttaaatggaatgcaca
gggcttttaacaactgtgtgtttttcacattcgtgttcctgtcaacagaa
aataaatggaacaacgaagtgcccactcctagggtaggccaaagtgaatt
gagtttttagaaacctctcccatgtttggtaaagccaaactgtggacact
gtcctctactttattgaacacctaccaaagctgtcagatagcgtattttc
tgaaacttgggtaacctgcctttagttcccatagcataatcccttttaaa
aacagctcacttatctcttgctagtttaagaaaccaccgtatttccataa
aactgttaatatccagtaggcccttccaagatggccttaagccagagaag
ttacttaaaaacaactcccccaagtcccaacttaccatacatgagaacct
agaattaattctcaacactgggaaagtaggtaaatttattatgtgtaata
aataagcctgttatttgtagatctattgttcacaaaccctaaaccaaaaa
tttcaagcagttattaaaatctttaacaatttttttctacagctacaggt
aactgacaacctcttctgataaaactgcacacctgcattcatgtcaaagt
aatggaaataaatttaaaaactaaacccatatattgttatgtgaactaaa
cttcttaatacttattttgtgatgttgcatatatgagcatatttaacttt
ttgtcttcttaataatgtgcatatgacgtgtctgtaaatctaacactaac
cctgaggaggaaactcatgtggtatcagagaccacttgagaattctaagg
attggattgaggttatcaggcatagctttatgcctccccccataggccct
tgagatatacaatatgtctctctgtagcacaggctattcaaggactcact
gtattcagctgaagtgtacttttgagaaaacctcatgccactagtgcctg
agggagcaaagggaggttaagaattcaagtctgggtctctcccaaatcct
tcctctgacacctaaaataaggccaccgctgcataagcctccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90812596_90813553
seq2: B6Ng01-145L20.b_45_1003 (reverse)

seq1  ATCAACATTGGAGACTTGTGTGGTGCCAGGTGGTGGCAGCTATACAAACG  50
      ||||||||| ||||| ||||||||||||||| || |||||||| || |||
seq2  ATCAACATT-GAGACATGTGTGGTGCCAGGT-GTTGCAGCTAT-CATACG  47

seq1  GTAGAAACTTTGTAT-CCAGGGATGTCCATACCTGCTTTG-AGTCATTTT  98
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  GTAGAAACTTTGTATCCCAGGGATGTCCATACCTGCTTTGAAGTCATTTT  97

seq1  GGATCTCCTCCAGGATCTGGCTTGTATCAAAGATAGTGGTGTACTATGCA  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCTACAGGATCTGGCTTGTATCAAAGATAGTGGTGTACTATGCA  147

seq1  TAAAGAAAACCAATGGGAATTGTGTCTATATTTTCTGATTTGAAAAAAGG  198
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TAAAGAAAACCAATGGGAATTGTGTCTATATATTCTGA-TTGAAAAAAGG  196

seq1  GTACATAAAACTTTTACTATACAGCTAATTTCCCTGTAAGATTGATGACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAAAACTTTTACTATACAGCTAATTTCCCTGTAAGATTGATGACT  246

seq1  AAGACATATGACTTATCAACTCTATAACTGTGACCATTTTCTTTCTAAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATATGACTTATCAACTCTATAACTGTGACCATTTTCTTTCTAAGA  296

seq1  AAATGAAGGAAG-AAAATCTCTCTCACATTAGTTAT-AAAAAAAATACCT  346
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  AAATGAAGGAAGAAAAATCTCTCTCACATTAGTTATAAAAAAAAATACCT  346

seq1  AGAAAT-AAACTTAACCAAGGAGGTGAAAGTTCTTTACACAGAAAACTTT  395
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAACTTAACCAAGGAGGTGAAAGTTCTTTACACAGAAAACTTT  396

seq1  AAGATGTTGAAAGAAAAATTAATGAAGACACTAGAAGGTAAGAAGCTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTGAAAGAAAAATTAATGAAGACACTAGAAGGTAAGAAGCTCTC  446

seq1  CTTTGTTCATGGATAGGCAGAATTAATATAATGAAATAAGCTAAAAGCTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCATGGATAGGCAGAATTAATATAATGAAATAAGCTAAAAGCTA  496

seq1  ACTACAGATTCAGTGAAATCCCATTAAAGTCCTAATGCCATTTATTTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGATTCAGTGAAATCCCATTAAAGTCCTAATGCCATTTATTTTTT  546

seq1  TTTCACAGAGTTAGAAACAAATTTCAAAACTCACATGGAAACACAGAAAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGAGTTAGAAACAAATTTCAAAACTCACATGGAAACACAGAAAC  596

seq1  TCTAAATAGCTAACACAATCCTAAGCAGAAAAAAAAACACTGGATCGCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAGCTAACACAATCCTAAGCAGAAAAAAAAACACTGGATCGCAA  646

seq1  TACCCAATCTCAAAGTATTCTACAGAGCCATAGTGACAAAAACAGAATGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATCTCAAAGTATTCTACAGAGCCATAGTGACAAAAACAGAATGA  696

seq1  TTCTGACACATAAGGCAACATACCAAGCAAAAGATCAGAATAGAAGATCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACACATAAGGCAACATACCAAGCAAAAGATCAGAATAGAAGATCC  746

seq1  AATCCCCTTTCCCAAAAATAGAACAGGGCCTAGAGTGAGTGGTTGGAGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTTTCCCAAAAATAGAACAGGGCCTAGAGTGAGTGGTTGGAGTG  796

seq1  TCTATGTAAGTGAGCTCCAGAACAGCCAGAGATACACAGTAAGATCCTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAAGTGAGCTCCAGAACAGCCAGAGATACACAGTAAGATCCTGT  846

seq1  CTCTACAAACAAACAAACAAACAACAACAACAAACCCAAATACAATAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAAACAAACAAACAAACAACAACAACAAACCCAAATACAATAAAA  896

seq1  TAAACCCCTCCAGAAAACCAAATAACCCTATTAAAATGGGGTACAGAGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCCTCCAGAAAACCAAATAACCCTATTAAAATGGGGTACAGAGGT  946

seq1  AAACAAAGAATTC  958
      |||||||||||||
seq2  AAACAAAGAATTC  959

seq1: chr5_90653724_90654826
seq2: B6Ng01-145L20.g_68_1163

seq1  GAATTCCATCAACAGCACAATTTTGCTTCAACGGTTAAATGGAATGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAACAGCACAATTTTGCTTCAACGGTTAAATGGAATGCACA  50

seq1  GGGCTTTTAACAACTGTGTGTTTTTCACATTCGTGTTCCTGTCAACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTAACAACTGTGTGTTTTTCACATTCGTGTTCCTGTCAACAGAA  100

seq1  AATAAATGGAACAACGAAGTGCCCACTCCTAGGGTAGGCCAAAGTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGAACAACGAAGTGCCCACTCCTAGGGTAGGCCAAAGTGAATT  150

seq1  GAGTTTTTAGAAACCTCTCCCATGTTTGGTAAAGCCAAACTGTGGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTAGAAACCTCTCCCATGTTTGGTAAAGCCAAACTGTGGACACT  200

seq1  GTCCTCTACTTTATTGAACACCTACCAAAGCTGTCAGATAGCGTATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTACTTTATTGAACACCTACCAAAGCTGTCAGATAGCGTATTTTC  250

seq1  TGAAACTTGGGTAACCTGCCTTTAGTTCCCATAGCATAATCCCTTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTGGGTAACCTGCCTTTAGTTCCCATAGCATAATCCCTTTTAAA  300

seq1  AACAGCTCACTTATCTCTTGCTAGTTTAAGAAACCACCGTATTTCCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCACTTATCTCTTGCTAGTTTAAGAAACCACCGTATTTCCATAA  350

seq1  AACTGTTAATATCCAGTAGGCCCTTCCAAGATGGCCTTAAGCCAGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTAATATCCAGTAGGCCCTTCCAAGATGGCCTTAAGCCAGAGAAG  400

seq1  TTACTTAAAAACAACTCCCCCAAGTCCCAACTTACCATACATGAGAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAAAAACAACTCCCCCAAGTCCCAACTTACCATACATGAGAACCT  450

seq1  AGAATTAATTCTCAACACTGGGAAAGTAGGTAAATTTATTATGTGTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATTCTCAACACTGGGAAAGTAGGTAAATTTATTATGTGTAATA  500

seq1  AATAAGCCTGTTATTTGTAGATCTATTGTTCACAAACCCTAAACCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCTGTTATTTGTAGATCTATTGTTCACAAACCCTAAACCAAAAA  550

seq1  TTTCAAGCAGTTATTAAAATCTTTAACAATTTTTTTCTACAGCTACAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCAGTTATTAAAATCTTTAACAATTTTTTTCTACAGCTACAGGT  600

seq1  AACTGACAACCTCTTCTGATAAAACTGCACACCTGCATTCATGTCAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACAACCTCTTCTGATAAAACTGCACACCTGCATTCATGTCAAAGT  650

seq1  AATGGAAATAAATTTAAAAACTAAACCCATATATTGTTATGTGAACTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATAAATTTAAAAACTAAACCCATATATTGTTATGTGAACTAAA  700

seq1  CTTCTTAATACTTATTTTGTGATGTTGCATATATGAGCATATTTAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAATACTTATTTTGTGATGTTGCATATATGAGCATATTTAACTTT  750

seq1  TTGTCTTCTTAATAATGTGCATATGACGTGTCTGTAAATCTAACACTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCTTAATAATGTGCATATGACGTGTCTGTAAATCTAACACTAAC  800

seq1  CCTGAGGAGGAAACTCATGTGGTATCAGAGACCACTTGAGAATTCTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAGGAAACTCATGTGGTATCAGAGACCACTTGAGAATTCTAAGG  850

seq1  ATTGGATTGAGGTTATCAGGCATAGCTTTATGCCT-CCCCCATAGGCCCT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTGGATTGAGGTTATCAGGCATAGCTTTATGCCTCCCCCCATAGGCCCT  900

seq1  TGAGATATACAATATGTTCTCTCTGTAGCACAGGCTATTCAAGGACTCAC  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAGATATACAATATG-TCTCTCTGTAGCACAGGCTATTCAAGGACTCAC  949

seq1  TGTAATTCAGGCTGAAGTGTACTTTTGAGAAAACCTCATG-CACTAGTGC  998
      ||| ||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TGT-ATTCA-GCTGAAGTGTACTTTTGAGAAAACCTCATGCCACTAGTGC  997

seq1  CTGAGGGAGGCAAAGGGAGGTTAAGAATTCAAGTCTGGGTCTCTCCCAAG  1048
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CTGAGGGA-GCAAAGGGAGGTTAAGAATTCAAGTCTGGGTCTCTCCCAA-  1045

seq1  ATCCTT-CTCTGAACACCTAAAAATTAAGGGGCCACCGCTTGCAATAG-C  1096
      |||||| ||||| ||||||||||  |||  ||||||||| ||||  || |
seq2  ATCCTTCCTCTG-ACACCTAAAA--TAA--GGCCACCGC-TGCATAAGCC  1089

seq1  TCCCTGA  1103
      |||||||
seq2  TCCCTGA  1096