BAC Information

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BAC

Clone NameB6Ng01-145M03
Chromosome5 (Build37)
Map Location 11,122,603 - 11,326,536
singlet/doubletdoublet
Overlap geneLOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949
Upstream geneLOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907
Downstream geneSpeer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145M03.bB6Ng01-145M03.g
ACCDH943076DH943077
length9841,139
definitionDH943076|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M03, 5' end.DH943077|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,325,622 - 11,326,536)(11,122,603 - 11,123,750)
sequence
gaattcacaattatgtgacagcacacataaggtatgcaaaaattccagct
aggaaaaactacagtgtacttgaggaaagttggtatgtaatttcaccact
agctgagaagctattagcgcttcctagctattgaggaggaaaagctaata
ttttgatattatgactcctggtagactcaccacacaacagaacagggttc
tattccaaggtaagttaagtatcaaaaactggagaaagacgaaaaccaag
aaatcatctcatagttgggtaggaaggaaaaggagggttgaaaggtgtta
aatgatgggcagtcatatgtcccaatatattatgtaaagttttcaaggaa
ttaataaaatatcttttaaagcctatgcaggtaccataatatcaaacagt
tagaatgcatgtgcattgtgtaatgaattatacatttaaaaagtgggagt
taattaggcaatgaaggtaatcttgatgaatgaggttcctgcttttacac
aaaggtgcacagaagtctctgcctctgtctatgttcctctctctgtctct
gtctatgttcctttttctgtctctgtctatgttcctctctctgtctctgt
ctatgttcctctgtctgcctctgtctatgttcctctctctgtctctgtct
atgttcctctctctgtctctgtctatgttcctctgtctgcctctgtctat
gttcctctctctgtctctgtctatgttcctctctctgtctctgtctctat
ttatgtttcctgtctctgtttgtcttcgtctctatctgtctctgtcaggc
tctgcctcagtttctcttcctctctccctccttcccttcctgtgctttag
agttttttctccatccactcttccttttattctctcaccctctccctttc
tccacatacttatctcctcccttctccctttgccctttcattctcttctt
ttcttcttccttccctaccatcttccttccaggt
gaattctttctctagggttgaggcctcctgagacttctcccttcgacagc
ttacatctgtcggttgtccttgttcagattatgtataggcagccatgctg
ttgaggcttactggtgtaacttttctaatagtttaaggaggcaaagtctg
ctagaattgctctaccccctcttccacgatgaaatgcccaagctattgaa
aaaaaatatgaaaagataaaggaaaaatgtgttttgtatctgaattttat
gcagagtaagatgtacacaacagagcacaagaccttcaaatttgaccatt
aattcaaatatgtaatttattttttaattataacgcctgtctgtgtataa
aggattggcatcacacctcctaaagaaatcatacaaacatacagaaaacc
catgaaagattatacagtgtcttggataaacataagtaataaccccaatg
aactctaatctcacacttgttaaaatagccataaccaagaagatgtaaga
ctgacatgtgtatgcatacctcatgtgacagaagaaatatttgccaccaa
ctgctttctgataagactacgtagatatttcaaagcaatgctatgaaatt
atttttttcttagttgtttataaaccttacctctatatcttgaaaaactt
gacttcaaaataatgaattcatgttttagataaattctgctgcaatacac
tagcaaaatgaaattcacatgtgctggtaataaaattacaagaaaattta
aaacactaaaaaggtacttcagaaaacaaaattaaaatttacataaaggc
cagcactccaacgaccaaataaataccaaaaaaattgaaattggcatgtc
caattgatgtttctcaccatccccactgtgtcattttacccaattgccaa
gatctaaacacaaactcagaaatgaaatagtaaatagatttactctatat
aatgtagtattttccgtaataaaacaagtgtgtctaaagtagatgttgtt
atcagtcacatataaaaagagatgatgatagatagaatgatgatgatgat
gatagacgttgttggaaaatgattaatacaatctttcgatggattttttc
agattcaaatttacggtttcttgatgaaaggattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11325622_11326536
seq2: B6Ng01-145M03.b_49_968 (reverse)

seq1  GAAGGAGATAAGTATGTGGAGAAAGGGAGAGGGTGAGAGAAT-AAAGGAA  49
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGGAGATAAGTATGTGGAGAAAGGGAGAGGGTGAGAGAATAAAAGGAA  50

seq1  GAGTGGATGGAGAAAAAACTCTAAAGCACAGGAAGGGAAGGAGGGAGAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGATGGAGAAAAAACTCTAAAGCACAGGAAGGGAAGGAGGGAGAGA  100

seq1  GGAAGAGAGATCCAGGCAGAGACTGACAGAGACAGATAGAGACAAAGACA  149
      |||||||| |   |||||||| ||||||||||||||||||||| ||||||
seq2  GGAAGAGAAACTGAGGCAGAGCCTGACAGAGACAGATAGAGACGAAGACA  150

seq1  AACAGAGACAGG-AGCATAAATAGAGACAGAGACAGAGAGAGGAACATAG  198
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  AACAGAGACAGGAAACATAAATAGAGACAGAGACAGAGAGAGGAACATAG  200

seq1  ACAGAGGCAGAGAGAGGAACATAGACAGAGACAGAGAGAGGAACATAGAC  248
      |||||| ||||||||||||||||||||||| |||| ||||||||||||||
seq2  ACAGAGACAGAGAGAGGAACATAGACAGAGGCAGACAGAGGAACATAGAC  250

seq1  AGAGGCAGAGAGAGGAACAT----AGAGACAGAGAGAGGAACATAGACAG  294
      |||| |||||||||||||||    ||||||||||||||||||||||||||
seq2  AGAGACAGAGAGAGGAACATAGACAGAGACAGAGAGAGGAACATAGACAG  300

seq1  AGACAGAGAGAGGAACATAGACAGAGACAGAGAGAGGAACATAGACAGAG  344
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACAGAGGAACATAGACAGAGACAGAGAGAGGAACATAGACAGAG  350

seq1  ACAGAGAGAGGAACATAGACAGAGACAGAGAGAGGAACATAGACAGAGGC  394
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAGGAACATAGACAGAGACAGAGAGAGGAACATAGACAGAGGC  400

seq1  AGAGACTTCTGTGCACCTTTGTGTAAAAGCAGGAAACTCATTCATCAAGT  444
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  AGAGACTTCTGTGCACCTTTGTGTAAAAGCAGGAACCTCATTCATCAAGA  450

seq1  TTACCTTCATTGCCTAATTAACTCCCACTTTTTAAGTGTATAATTCATTA  494
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTACCTTCATTGCCTAATTAACTCCCACTTTTTAAATGTATAATTCATTA  500

seq1  CACAATGCACATGCATTCTAACTGTTTGATATTATGGTACCTGCATAGGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCACATGCATTCTAACTGTTTGATATTATGGTACCTGCATAGGC  550

seq1  TTTAAAAGATATTTTATTAATTCCTTGAAAACTTTACATAATATATTGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATATTTTATTAATTCCTTGAAAACTTTACATAATATATTGGG  600

seq1  ACATATGACTGCCCATCATTTAACACCCTTTCAACCCTCCTTTTCCTTCC  644
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACATATGACTGCCCATCATTTAACA-CCTTTCAACCCTCCTTTTCCTTCC  649

seq1  TACCGAACTATGAGATGATTTCTTGGTTTTCGTCTTTCTCCAGTTTTTGA  694
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACTATGAGATGATTTCTTGGTTTTCGTCTTTCTCCAGTTTTTGA  699

seq1  TACTTAACTTACCTTGGAATAGAACCCTGTTCTGTTGTGTGGTGAGTCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAACTTACCTTGGAATAGAACCCTGTTCTGTTGTGTGGTGAGTCTA  749

seq1  CCAGGAGTCATAATATCAAAATATTAGCTTTTCCTCCTCAATAGCTAGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTCATAATATCAAAATATTAGCTTTTCCTCCTCAATAGCTAGGA  799

seq1  AGAACTAATAGCTTCTCAGCTAGTGGTGAAATTACATACCAACTTTCCTC  844
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTAATAGCTTCTCAGCTAGTGGTGAAATTACATACCAACTTTCCTC  849

seq1  AAGTACACAATAGTTTTTCCTAGCTGGAATTTTTGCATACCTTATGTGTG  894
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACTGTAGTTTTTCCTAGCTGGAATTTTTGCATACCTTATGTGTG  899

seq1  CTGTCACATAATTGTGAATTC  915
      |||||||||||||||||||||
seq2  CTGTCACATAATTGTGAATTC  920

seq1: chr5_11122603_11123750
seq2: B6Ng01-145M03.g_68_1206

seq1  GAATTCTTTCTCTAGGGTTGAGGCCTCCTGACTCTTCTCCCTTCGACAGC  50
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCTTTCTCTAGGGTTGAGGCCTCCTGAGACTTCTCCCTTCGACAGC  50

seq1  AGTACATCTGTTGATTGTCCTTGTTCAGATTATGTATAGGCAGCCATGCT  100
        ||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  -TTACATCTGTCGGTTGTCCTTGTTCAGATTATGTATAGGCAGCCATGCT  99

seq1  GTTGAGGCTTACTGCTGTAACTTTTCTAATAGTTTAAGGAGGCAAAATCT  150
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  GTTGAGGCTTACTGGTGTAACTTTTCTAATAGTTTAAGGAGGCAAAGTCT  149

seq1  GCTAGAATTGCTCTACCCCCTCTTCCACGATGAAATGCCCAAGCTATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTAGAATTGCTCTACCCCCTCTTCCACGATGAAATGCCCAAGCTATTG-  198

seq1  AAAAAAAATATGAAAAGATAAAGGAAAAATGTGTTTTGTTTCTGAATTTT  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAAAAATATGAAAAGATAAAGGAAAAATGTGTTTTGTATCTGAATTTT  248

seq1  ATGCAGAGTAAGATGTACACAACAGAGCACAAGACCTTCAAATTTGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGTAAGATGTACACAACAGAGCACAAGACCTTCAAATTTGACCA  298

seq1  TTAATTCAAATATGTAATTTATTTTTTTAATAATAAAGCCTACATCTGTG  350
      ||||||||||||||||||||| ||||||||| |||| ||||   ||||||
seq2  TTAATTCAAATATGTAATTTA-TTTTTTAATTATAACGCCT--GTCTGTG  345

seq1  TATAAAGGATTGGCATCACACCTCCTAAAGAAATCATACAAACATACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGATTGGCATCACACCTCCTAAAGAAATCATACAAACATACAGA  395

seq1  AAACCCATGAAAGATTATACAGTGTCTTGGATAAACATAAGTAATAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAACCCATGAAAGATTATACAGTGTCTTGGATAAACATAAGTAATAACCC  445

seq1  CAATGAACTCTAATCTCACACTTGTTAAAATAGCCATAACCAAGAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACTCTAATCTCACACTTGTTAAAATAGCCATAACCAAGAAGATG  495

seq1  TAAGACTGACATGTGTATGCATACCTCATGTGACAGAAGAAATATTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAGACTGACATGTGTATGCATACCTCATGTGACAGAAGAAATATTTGCC  545

seq1  ACCAACTGCTTTCTGATAAGACTACATAGATATTTCAAAGCAATGCTATG  600
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCAACTGCTTTCTGATAAGACTACGTAGATATTTCAAAGCAATGCTATG  595

seq1  AAATTATTTTTTTCTTAGTTGTTTATAAACCTTACCTCTATATCTTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTTTTCTTAGTTGTTTATAAACCTTACCTCTATATCTTGAAA  645

seq1  AACTTGACTTCAAAATAATGAATTCATGTTTTAGATAAATTCTGGTGCAA  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACTTGACTTCAAAATAATGAATTCATGTTTTAGATAAATTCTGCTGCAA  695

seq1  TACACTAGCAAAATGAAATTCACATGTGCTGGTAATAAAATTACAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAGCAAAATGAAATTCACATGTGCTGGTAATAAAATTACAAGAAA  745

seq1  ATTTAAAACACTAAAAAGGTACTTCAGAAAACAAAATTAAAATTTACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACACTAAAAAGGTACTTCAGAAAACAAAATTAAAATTTACATA  795

seq1  AAGGCCAGCCCTCCAACAACCAAATAAATACCAAAAAAATTGAAATTGGC  850
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCACTCCAACGACCAAATAAATACCAAAAAAATTGAAATTGGC  845

seq1  ATGTCCTATTGATGTTTACTCACCATCCCCACTGTGTCATTTTACCCAAT  900
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGTCCAATTGATGTTT-CTCACCATCCCCACTGTGTCATTTTACCCAAT  894

seq1  TGCCAAGATCTAAACACAACCTCAGAAATGAAATAGTAAATAGATTTTAC  950
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TGCCAAGATCTAAACACAAACTCAGAAATGAAATAGTAAATAGA-TTTAC  943

seq1  TCTATATAATGTGGTATTTTCTGTAATAAAATAAGTGTGTCTAAAAGTAG  1000
      |||||||||||| |||||||| ||||||||| |||||||||| |||||||
seq2  TCTATATAATGTAGTATTTTCCGTAATAAAACAAGTGTGTCT-AAAGTAG  992

seq1  ATGTTG-TATCAGTGAACAACAATAAAAA-AGAAAATGATAGATAGATAG  1048
      |||||| |||||||   ||   ||||||| |||  ||||||||||||  |
seq2  ATGTTGTTATCAGT---CACATATAAAAAGAGATGATGATAGATAGAATG  1039

seq1  ATAGATAGAT--AGATAGA-----TGGAAAAATGATAGATAACAAATACA  1091
      || ||| |||   ||||||     | | ||||||||   ||| | |  | 
seq2  AT-GAT-GATGATGATAGACGTTGTTGGAAAATGAT---TAATACAATCT  1084

seq1  TTCGATAGATTTTTTCAAGATTCAAATTTACAGGTTTCTTGATGAAAGGA  1141
      |||||| ||||||||| |||||||||||||| ||||||||||||||||||
seq2  TTCGATGGATTTTTTC-AGATTCAAATTTAC-GGTTTCTTGATGAAAGGA  1132

seq1  TTTTTTT  1148
      |||||||
seq2  TTTTTTT  1139