BAC Information

Click to search

BAC

Clone NameB6Ng01-146A09
Chromosome5 (Build37)
Map Location 104,926,655 - 105,046,175
singlet/doubletdoublet
Overlap genePkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1
Downstream geneLOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A09.bB6Ng01-146A09.g
ACCDH943272DH943273
length1,1041,104
definitionDH943272|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A09, 5' end.DH943273|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,045,063 - 105,046,175)(104,926,655 - 104,927,766)
sequence
gaattcagaaaaaaaacatgcactctgaaacccacaatgaaaactacttg
gaagaacaatttaatgtctgcttcctgccaagcaccatgaacacatgaaa
aaattctgaaactcaaagttactttagcaccctggagttaatttccagga
accaggggttgtggctggtggtacatgaacaagagaaaaatgcataacaa
tagggactttcaagaagagcaggcctaaactgggggtggtggcacatgcc
taggcagaagcaggtggatttctgagtttgaggccaggctggtctacaaa
gtgaattccaggacagccagagccatacagagaaaccctgtctcaaaaaa
acaaacaaacaaacaaaaaaacaaccaaacaaaaagaagagcaggccatt
ccctgctgaggaaatgccatcaataagatgatgtatgatcttgtccttat
gtgtaatattagctgctgatctataacctgacacacacacagcttctcag
ctgacataattacatcaacaaagtttgatcccacagaacctccccaactt
ttatacccaccaatctgaacaatttctataaacatgcatgaattaataaa
tgctgaggaatttaaagcaatcactcactttgccccctccttcctaatgg
tgactcctgcagatgactcccttaaactttagtctgtgagctagctcttg
tctacattgtttcaccctactgtatacacagtaaactattccttctgttc
tagtctgaaggcagaagacatgttccacatgaaagcacttctcctttcac
tgaaaaggaccgttaattacacggtgtatatgagtaattttaaaaacact
cttgtacatacatttaacatacggacttaagaagtttaatgagactcgag
ccgcgggcttcctggccagcggagttgcctgacacccgcaagggcccaca
caggattttccacgggatcctaagacctctggtgagtgaacacagcgcgg
cccaatccaatcgcgcagacctgagactgcgtacataggaagcacactgc
ccgggcctgacctgggacaaagcccttccctccactcgagccgcgggcct
cctg
gaattcaaggccatggaacaattaatttaccctgtgattattctgttcac
tctgcacaatttcggcctgatagccctgcttatcatgctcagcaaaatgt
ctctgctgtgctccttcagctaagcatgagacctgcactcacagtgactg
gcagttactctaccactgacgaattgccttaggcttgcctctaatttctt
gaaagtgctcagccttatttcactgtctttaagaaatgtttttaccgccg
ggcagtggtagcacatgcctttaataccagcacttgggaggcagaggcag
gtggatttctgagttcgaggccagcctggtgagttccaggacagccaggg
ctacacagagaaaccctgtcttgaaaaaaaagaaaaaagaaatgttttta
cctataacaaaagcccttactattatacaaaaaataaacaagccattgct
gctgccctttcctctgtgttctggggagcacacagctatggagtgcatag
tggggtacatatggagtacagagtgggctacaaagacatatacttatctc
tttatatttcaaatgtaaacatatacatatgtaaataatatggaagagat
tcctgatttattgaacattttcttcaggttttataaaaaactgagattac
actccttgctttcaccaatacatttttcttgaatagccatcatctgctaa
gcatcaaactttcaatagttccacagtaactgaaagacaaaattcaaaag
gggaataaacaaaaccatgtcatttgtttttcttttctttctctttttcc
aatagggctgccaaaaagcactggtcaaactaaaactgaaaagaaacact
gtagatgccatctcagagagtctccggcaaggtggtggcaaactgaactt
tgatgagcttcggcaagacctgaaaggtgagggccatgtgctaattcttg
gtgatgagagatgtttcagccccaagtactggtaaaaaatgtttttcatt
cggaagcagatattttccttgacatgctatatgtctccctctgcattctg
atgtttcagtgttaggctgactcacgtgcaaaataactctacttcagttt
ctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105045063_105046175
seq2: B6Ng01-146A09.b_49_1152 (reverse)

seq1  CAGGAAGCCCGCGGCTCGAGTGGAGCGGAAGGGGCTTTTGTCCCGGGTCA  50
      ||||| ||||||||||||||||||| |||||||   |||||||| |||||
seq2  CAGGAGGCCCGCGGCTCGAGTGGAG-GGAAGGG--CTTTGTCCCAGGTCA  47

seq1  GGCCCGGGCAGTGTGCTTCCCTATGTACCGCAGTCTCAGGTTCTGCGCGA  100
      |||||||||||||||||| |||||||| |||||||||||| |||||||||
seq2  GGCCCGGGCAGTGTGCTT-CCTATGTA-CGCAGTCTCAGG-TCTGCGCGA  94

seq1  TTGGATTGGGGCCGGCGCTGTGTTCCACTCACCAGAGGTCTTAGGATCCC  150
      ||||||||||  | |||||||||| |||||||||||||||||||||||||
seq2  TTGGATTGGG--CCGCGCTGTGTT-CACTCACCAGAGGTCTTAGGATCCC  141

seq1  GTGGAAAATCCTGTGTGGGCCCTTGCGGGTGTCAGGCAACTCCGCTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAATCCTGTGTGGGCCCTTGCGGGTGTCAGGCAACTCCGCTGGCC  191

seq1  AGGAAGCCCGCGGCTCGAGTCTCATTAAACTTCTTAAGTCCGTATGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCCGCGGCTCGAGTCTCATTAAACTTCTTAAGTCCGTATGTTAA  241

seq1  ATGTATGTACAAGAGTGTTTTTAAAATTACTCATATACACCGTGTAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTACAAGAGTGTTTTTAAAATTACTCATATACACCGTGTAATTA  291

seq1  ACGGTCCTTTTCAGTGAAAGGAGAAGTGCTTTCATGTGGAACATGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCTTTTCAGTGAAAGGAGAAGTGCTTTCATGTGGAACATGTCTTC  341

seq1  TGCCTTCAGACTAGAACAGAAGGAATAGTTTACTGTGTATACAGTAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAGACTAGAACAGAAGGAATAGTTTACTGTGTATACAGTAGGGT  391

seq1  GAAACAATGTAGACAAGAGCTAGCTCACAGACTAAAGTTTAAGGGAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGTAGACAAGAGCTAGCTCACAGACTAAAGTTTAAGGGAGTCA  441

seq1  TCTGCAGGAGTCACCATTAGGAAGGAGGGGGCAAAGTGAGTGATTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGAGTCACCATTAGGAAGGAGGGGGCAAAGTGAGTGATTGCTTT  491

seq1  AAATTCCTCAGCATTTATTAATTCATGCATGTTTATAGAAATTGTTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTCAGCATTTATTAATTCATGCATGTTTATAGAAATTGTTCAGA  541

seq1  TTGGTGGGTATAAAAGTTGGGGAGGTTCTGTGGGATCAAACTTTGTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGTATAAAAGTTGGGGAGGTTCTGTGGGATCAAACTTTGTTGAT  591

seq1  GTAATTATGTCAGCTGAGAAGCTGTGTGTGTGTCAGGTTATAGATCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATGTCAGCTGAGAAGCTGTGTGTGTGTCAGGTTATAGATCAGCA  641

seq1  GCTAATATTACACATAAGGACAAGATCATACATCATCTTATTGATGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATTACACATAAGGACAAGATCATACATCATCTTATTGATGGCAT  691

seq1  TTCCTCAGCAGGGAATGGCCTGCTCTTCTTTTTGTTTGGTTGTTTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGCAGGGAATGGCCTGCTCTTCTTTTTGTTTGGTTGTTTTTTTG  741

seq1  TTTGTTTGTTTGTTTTTTTGAGACAGGGTTTCTCTGTATGGCTCTGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTTTTGAGACAGGGTTTCTCTGTATGGCTCTGGCTG  791

seq1  TCCTGGAATTCACTTTGTAGACCAGCCTGGCCTCAAACTCAGAAATCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATTCACTTTGTAGACCAGCCTGGCCTCAAACTCAGAAATCCAC  841

seq1  CTGCTTCTGCCTAGGCATGTGCCACCACCCCCAGTTTAGGCCTGCTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGCCTAGGCATGTGCCACCACCCCCAGTTTAGGCCTGCTCTTC  891

seq1  TTGAAAGTCCCTATTGTTATGCATTTTTCTCTTGTTCATGTACCACCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTCCCTATTGTTATGCATTTTTCTCTTGTTCATGTACCACCAGC  941

seq1  CACAACCCCTGGTTCCTGGAAATTAACTCCAGGGTGCTAAAGTAACTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCCTGGTTCCTGGAAATTAACTCCAGGGTGCTAAAGTAACTTTG  991

seq1  AGTTTCAGAATTTTTTCATGTGTTCATGGTGCTTGGCAGGAAGCAGACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAATTTTTTCATGTGTTCATGGTGCTTGGCAGGAAGCAGACAT  1041

seq1  TAAATTGTTCTTCCAAGTAGTTTTCATTGTGGGTTTCAGAGTGCATGTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTTCTTCCAAGTAGTTTTCATTGTGGGTTTCAGAGTGCATGTTT  1091

seq1  TTTTTCTGAATTC  1113
      |||||||||||||
seq2  TTTTTCTGAATTC  1104

seq1: chr5_104926655_104927766
seq2: B6Ng01-146A09.g_69_1172

seq1  GAATTCAAGGCCATGGAACAATTAATTTACCCTGTGATTATTCTGTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCATGGAACAATTAATTTACCCTGTGATTATTCTGTTCAC  50

seq1  TCTGCACAATTTCGGCCTGATAGCCCTGCTTATCATGCTCAGCAAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAATTTCGGCCTGATAGCCCTGCTTATCATGCTCAGCAAAATGT  100

seq1  CTCTGCTGTGCTCCTTCAGCTAAGCATGAGACCTGCACTCACAGTGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGTGCTCCTTCAGCTAAGCATGAGACCTGCACTCACAGTGACTG  150

seq1  GCAGTTACTCTACCACTGACGAATTGCCTTAGGCTTGCCTCTAATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTACTCTACCACTGACGAATTGCCTTAGGCTTGCCTCTAATTTCTT  200

seq1  GAAAGTGCTCAGCCTTATTTCACTGTCTTTAAGAAATGTTTTTACCGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCTCAGCCTTATTTCACTGTCTTTAAGAAATGTTTTTACCGCCG  250

seq1  GGCAGTGGTAGCACATGCCTTTAATACCAGCACTTGGGAGGCAGAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGTAGCACATGCCTTTAATACCAGCACTTGGGAGGCAGAGGCAG  300

seq1  GTGGATTTCTGAGTTCGAGGCCAGCCTGGTGAGTTCCAGGACAGCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTCTGAGTTCGAGGCCAGCCTGGTGAGTTCCAGGACAGCCAGGG  350

seq1  CTACACAGAGAAACCCTGTCTTGAAAAAAAAGAAAAAAGAAATGTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAGAAACCCTGTCTTGAAAAAAAAGAAAAAAGAAATGTTTTTA  400

seq1  CCTATAACAAAAGCCCTTACTATTATACAAAAAATAAACAAGCCATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACAAAAGCCCTTACTATTATACAAAAAATAAACAAGCCATTGCT  450

seq1  GCTGCCCTTTCCTCTGTGTTCTGGGGAGCACACAGCTATGGAGTGCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTTTCCTCTGTGTTCTGGGGAGCACACAGCTATGGAGTGCATAG  500

seq1  TGGGGTACATATGGAGTACAGAGTGGGCTACAAAGACATATACTTATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACATATGGAGTACAGAGTGGGCTACAAAGACATATACTTATCTC  550

seq1  TTTATATTTCAAATGTAAACATATACATATGTAAATAATATGGAAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTCAAATGTAAACATATACATATGTAAATAATATGGAAGAGAT  600

seq1  TCCTGATTTATTGAACATTTTCTTCAGGTTTTATAAAAAACTGAGATTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTTATTGAACATTTTCTTCAGGTTTTATAAAAAACTGAGATTAC  650

seq1  ACTCCTTGCTTTCACCAATACATTTTTCTTGAATAGCCATCATCTGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGCTTTCACCAATACATTTTTCTTGAATAGCCATCATCTGCTAA  700

seq1  GCATCAAACTTTCAATAGTTCCACAGTAACTGAAAGACAAAATTCAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAACTTTCAATAGTTCCACAGTAACTGAAAGACAAAATTCAAAAG  750

seq1  GGGAATAAACAAAACCATGTCATTTGTTTTTCTTTTCTTTCTCTTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAACAAAACCATGTCATTTGTTTTTCTTTTCTTTCTCTTTTTCC  800

seq1  AATAGGGCTGCCAAAAAGCACTGGTCAAACTAAAACTGAAAAGAAACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGCTGCCAAAAAGCACTGGTCAAACTAAAACTGAAAAGAAACACT  850

seq1  GTAGATGCCATCTCAGAGAGTCTCCGGCAAGGTGGTGGCAAACTGAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGCCATCTCAGAGAGTCTCCGGCAAGGTGGTGGCAAACTGAACTT  900

seq1  TGATGAGCTTCGGCAAGACCTGAAAGGGTGAGGGCCATGTGCTAATTCTT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGATGAGCTTCGGCAAGACCTGAAA-GGTGAGGGCCATGTGCTAATTCTT  949

seq1  GGTGATGAGAGGATGTTTCAGCCCCAAGTACTGGTAAAAAATGTTTTTCA  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGAGA-GATGTTTCAGCCCCAAGTACTGGTAAAAAATGTTTTTCA  998

seq1  TTCGGGGAAGCAGATATTTTCCTGGAACATGCTATATGTCTCCCTCCTGC  1050
      |||  |||||||||||||||||| | ||||||||||||||||||| ||||
seq2  TTC--GGAAGCAGATATTTTCCTTG-ACATGCTATATGTCTCCCT-CTGC  1044

seq1  ATTCTGATGTTTCAGTGTTAGGGCTGGACCACGTGCAGAATAAACTC-AC  1099
      |||||||||||||||||||| |||||   |||||||| ||| ||||| ||
seq2  ATTCTGATGTTTCAGTGTTA-GGCTGACTCACGTGCAAAAT-AACTCTAC  1092

seq1  TTCAGTTTTCTCA  1112
      ||||| |||||||
seq2  TTCAG-TTTCTCA  1104