BAC Information

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BAC

Clone NameB6Ng01-146E21
Chromosome5 (Build37)
Map Location 24,805,072 - 24,806,105
singlet/doubletsinglet
Overlap geneMll3
Upstream geneKcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146E21.bB6Ng01-146E21.g
ACCDH943482DH943483
length1,1651,039
definitionDH943482|Mus musculus domesticus DNA, BAC clone: B6Ng01-146E21, 5' end.DH943483|Mus musculus domesticus DNA, BAC clone: B6Ng01-146E21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttagtggggttacttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgcactgcagaagctttgcaacttta
tgaggtcccatttatcgattctccatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtacccatatcttcgaggtttttccctac
tttctcctctataagtttcagtgtctctggtttcatgtggagttcctcaa
tccacttagatttgaccttagtataaggagataggaatggatcaattcgc
attcttctacatgataaccgccagttgttccagctcatttgttgaaaatg
ctgtctttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggctcatctctgggtcttcaattctattccattgg
tctacttgtctgtcattataccagtaccgtgcagtttttatcacaattgc
tctgtagtacagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatctgctgattgccctttgtagttcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttactatattgatcctgccaatccatgagcatgggagatctttccatctt
ctaagatcttctttaatttctttcttcagagacttaagtttttatcatac
agatttttcacttccctagaagtcacgccaaggattttataattaatttg
tgacttattgaggaagggtggtggttttcctatatctttctcaacctgtt
tattccttgtggtacagaaagccattgacttgttgagttaaattttaatt
ccaccacattcatgagagctgtttaccaggttagagttcttggggaattt
ttgggccttatattaccatctcactcaccgcgcaaaggagattttgctct
ctcccttccatatgt
gaattcactgttgggaagtttgttttctgactctatgcaaggctggcctg
ctgacacatttggagtgggtacaggcactggctccaccggctcctgttgt
ctttgctgagggagctcactgggtgagctcaccgcaggagtggaggtagt
ttctgagaggcctggggttagtggagcagcgcagtcagagtggggagttg
acggtgctttgccggattctgcatcatcatcttttttcttttttcttgtt
cttttctttttccccttttcttctggaattatgtcagaatataactgaat
gagagactggctggatcctgaataattctgtccctgtgttacagcagggt
cttggccacaagggacattgctattagctactggagacgttcctggtaaa
attggtgtgaatggaggcctcagtggagactgctgaaagctggacccagg
aagatttccatgtcccggcttaacagaatgaaagtttgggctcccaccag
aagcagatggtgaatctggaacaaaggagggaggccctacctgcctttgc
tcattggtttgcatgaaagtttggtttgggggtgagttaacagacccttg
ttggacattctgctgctgtaaaactggccctatttgttgctggtgttgtg
gagactgctgaaggggtcgtgggaggttgcaaaaagtcacaaggtctgtt
agaaccattagaatggcatctgggaaaacaggtgtcctgttggctagctc
agcacccatcagacaatgctgctccttctccattcgctgctgcagagctc
tctgtctgtctacttcttgcatcagttgaactcgctggtctttcctgctg
ttctcgtaagcgttccttcctctctcgctcttgaaaactttcacctgaaa
ggattgtgttcatcaaattccacttcgagtgtggtccaatccgggggatg
tcacttgacactgtcccgggggcgggggtacaagtttttaagatagtcgg
gccgattggggggctagaatcttggaggattagggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24805072_24806105
seq2: B6Ng01-146E21.g_68_1106

seq1  GAATTCACTGTTGGGAAGTTTGTTTTCTGACTCTATGCAAGGCTGGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTGGGAAGTTTGTTTTCTGACTCTATGCAAGGCTGGCCTG  50

seq1  CTGACACATTTGGAGTGGGTACAGGCACTGGCTCCACCGGCTCCTGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACATTTGGAGTGGGTACAGGCACTGGCTCCACCGGCTCCTGTTGT  100

seq1  CTTTGCTGAGGGAGCTCACTGGGTGAGCTCACCGCAGGAGTGGAGGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGAGGGAGCTCACTGGGTGAGCTCACCGCAGGAGTGGAGGTAGT  150

seq1  TTCTGAGAGGCCTGGGGTTAGTGGAGCAGCGCAGTCAGAGTGGGGAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAGGCCTGGGGTTAGTGGAGCAGCGCAGTCAGAGTGGGGAGTTG  200

seq1  ACGGTGCTTTGCCGGATTCTGCATCATCATCTTTTTTCTTTTTTCTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGCTTTGCCGGATTCTGCATCATCATCTTTTTTCTTTTTTCTTGTT  250

seq1  CTTTTCTTTTTCCCCTTTTCTTCTGGAATTATGTCAGAATATAACTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTCCCCTTTTCTTCTGGAATTATGTCAGAATATAACTGAAT  300

seq1  GAGAGACTGGCTGGATCCTGAATAATTCTGTCCCTGTGTTACAGCAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTGGCTGGATCCTGAATAATTCTGTCCCTGTGTTACAGCAGGGT  350

seq1  CTTGGCCACAAGGGACATTGCTATTAGCTACTGGAGACGTTCCTGGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCACAAGGGACATTGCTATTAGCTACTGGAGACGTTCCTGGTAAA  400

seq1  ATTGGTGTGAATGGAGGCCTCAGTGGAGACTGCTGAAAGCTGGACCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTGAATGGAGGCCTCAGTGGAGACTGCTGAAAGCTGGACCCAGG  450

seq1  AAGATTTCCATGTCCCGGCTTAACAGAATGAAAGTTTGGGCTCCCACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCCATGTCCCGGCTTAACAGAATGAAAGTTTGGGCTCCCACCAG  500

seq1  AAGCAGATGGTGAATCTGGAACAAAGGAGGGAGGCCCTACCTGCCTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGGTGAATCTGGAACAAAGGAGGGAGGCCCTACCTGCCTTTGC  550

seq1  TCATTGGTTTGCATGAAAGTTTGGTTTGGGGGTGAGTTAACAGACCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTTTGCATGAAAGTTTGGTTTGGGGGTGAGTTAACAGACCCTTG  600

seq1  TTGGACATTCTGCTGCTGTAAAACTGGCCCTATTTGTTGCTGGTGTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATTCTGCTGCTGTAAAACTGGCCCTATTTGTTGCTGGTGTTGTG  650

seq1  GAGACTGCTGAAGGGGTCGT-GGAGGTTGCAAAAAGTCACAAGGTCTGTC  699
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  GAGACTGCTGAAGGGGTCGTGGGAGGTTGCAAAAAGTCACAAGGTCTGTT  700

seq1  AGAACCA-TAGAATGGCATCTGGG-AAACAGGTGTCCTGTTGGCTAGCTC  747
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  AGAACCATTAGAATGGCATCTGGGAAAACAGGTGTCCTGTTGGCTAGCTC  750

seq1  AGCACCCATCAGACAATGCTGCTCCATCTCCATCCGCTGCTGCAGAGCTC  797
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  AGCACCCATCAGACAATGCTGCTCCTTCTCCATTCGCTGCTGCAGAGCTC  800

seq1  TCTGTCTGTCTACTTCTTGCATCAGTTGAACTCGCT-GTCTTTCCTGCTG  846
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTGTCTGTCTACTTCTTGCATCAGTTGAACTCGCTGGTCTTTCCTGCTG  850

seq1  TTCTCGTAAGCGTTCCTTCCTCTCTCGCTCTTGAAAACTTTCA-CTGAAA  895
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTCGTAAGCGTTCCTTCCTCTCTCGCTCTTGAAAACTTTCACCTGAAA  900

seq1  GGATTGTTGTCATCAAATTCCAC-TCGAGGTGGTGGTCCATTCTGTGGAT  944
      |||||||  |||||||||||||| |||||   |||||||| || | ||  
seq2  GGATTGTGTTCATCAAATTCCACTTCGAG--TGTGGTCCAATCCGGGGGA  948

seq1  TTGCACTTGACACTGTCCCTGGGGCTGGTGTACAAGTTTTTAAAGATAGT  994
      |  |||||||||||||||| ||||| || |||||||||||| ||||||||
seq2  TGTCACTTGACACTGTCCCGGGGGCGGGGGTACAAGTTTTT-AAGATAGT  997

seq1  TGGGC--AATTGGGGGCTGAATTCTAGGAGGATTAAGGGGGA  1034
       ||||  | | |||||||  | ||| ||||||||| ||||||
seq2  CGGGCCGATTGGGGGGCTAGAATCTTGGAGGATTAGGGGGGA  1039