BAC Information

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BAC

Clone NameB6Ng01-146G03
Chromosome5 (Build37)
Map Location 58,119,387 - 58,312,733
singlet/doubletdoublet
Overlap genePcdh7
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146G03.bB6Ng01-146G03.g
ACCDH943542DH943543
length1,0531,084
definitionDH943542|Mus musculus domesticus DNA, BAC clone: B6Ng01-146G03, 5' end.DH943543|Mus musculus domesticus DNA, BAC clone: B6Ng01-146G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,311,678 - 58,312,733)(58,119,387 - 58,120,482)
sequence
gaattcagtagactaaatgctttactcacaataaatggttgcatttagct
ctgaattctcacaatattccaaattctggacttgtacagagtttccacta
taacatctatgaactttctctgggggtttgggtttcatggcatatggcct
cacacagaagagaaacaatacacgcaattcaggaaaagaaactgtaactc
agagcaatgcaatctcagagccatgtgcatgttgtaggtcgtgtattggt
ctccagggatctctccaaagtagacggtgatcattttacagcagatatta
aaataaaagatggaaaaacatgtttaaaaataagaaaccctgcagaagat
tttgaagcagcttgtggcagattttatgatatgtttatttctgaagcaac
tttagacttgacatacttttcatttgaacacatatagtataaaaggtcat
tttccttgacactgctacatataaagggtaaaaggttgtttggaggaggc
atttaaatctgcatcgtctcacatatttaatagaaagttaatcatatttt
ctgggcagtaataaaaatacatacaagataaaaagacccaatatgaaaat
tcagcctgcaggaataaggaaacacttaactaaatcaaaaatttaaaaca
acgcaagctacctttccaaattttagataagaatggaatgtgtcacaatg
caaaaataacttttaagaaacacaaaaattgaagtaattgttattttttt
ttccctaaagagaataggcatatctgatctgctataatataattcattca
tgagcttagcctgggaagcgtaattggtcttctgaacagagtggtgacat
aaaaatactcttaacagggccttattaaatgtattggtttattggtagaa
taaacctacttagtactggccatttttatagcaaggagggggcacagaca
tgcaattaatttgtcctcgagtggtaggtcggaatctggttctactgcca
attatgtcatactaacttctaaaatttcaatgaccatttaaccttaaaga
cac
gaattccactctaatatgatgctccattttgcaccatactctgtcttcac
cttgcttctacgacacctgctggagcctgcccttggccgtggggtgtcag
ccaatcactgtttgttttccttgttgtgcattatgtttccaagctttttc
ttacctatttaaggaaaataaatagtttgaaagcaagttaaggtccaaag
aggcagtattaatacaggcatgtattattcacagatgtctacagttctgt
tcccaaagagatggctagcaaccattaacacttgataggaaaagcattcg
gaagaaaacccccaaacatattttggtaataataataattctaagatttt
ggctttatgtgcaaagggaaattcagtttcttatgtcttcatcgacagta
cactaaatactgatttcaaataaaaccctaaattgatcagtgttttttct
gtgtattgtgatcacaacttttcccagctagacagacagttcttgccaaa
tctgtgttacaattctgaatgttactatgagcatttgtgtttttacccac
tcgtgaatattaaaaacttcaagcactttaataaaacatacttgtctgtg
actttctgagtctaacacagacactgcaatgggttaaattttccaagagg
tggttgttgttgacgataaattcattaagaatttttaaaaatttagttag
atttaccaaagtcactggagacaaattcagaaggaatatatacctgccag
ttttgtggactacattaatagggaggcttttatgtttgatgtaattctta
cagttctaagaattaagttccattgcatgagaccttttagttgtaggagt
gatggtctaggtaagttgacatcctctgaacaacctttctacccctgacc
catgtctgtatatctgtgcatatatttgttatattgtacacttatgtgtg
tacatggtctgatcttttatacttatttgtcatgcttgctgcccccaccc
cccattacattttcccagtcctaagtactggataagaagttcatggtcca
agtggtttcttttattctattcggcttgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58311678_58312733
seq2: B6Ng01-146G03.b_45_1096 (reverse)

seq1  TGTCTTTTAAGGTTAAATAGTCATTGAAATTTTTAGAAGTTAGTATTGAC  50
      |||| ||||||||||||| |||||||||| ||||||||||||||| ||||
seq2  TGTC-TTTAAGGTTAAATGGTCATTGAAA-TTTTAGAAGTTAGTA-TGAC  47

seq1  ATAATTGGCAGTAGAAACCAGATTCCGACCTA-CACTCGAGAACAAATTA  99
      |||||||||||||| ||||||||||||||||| |||||||| ||||||||
seq2  ATAATTGGCAGTAG-AACCAGATTCCGACCTACCACTCGAGGACAAATTA  96

seq1  ATTGCATGTCTGTGCTCTCTCCTTGCTTATAAAAATGGCCAGTACTAAGT  149
      ||||||||||||||| | |||||||| |||||||||||||||||||||||
seq2  ATTGCATGTCTGTGCCCCCTCCTTGC-TATAAAAATGGCCAGTACTAAGT  145

seq1  AGGTTTATTCTACCAATAAACCAATACATTTAATAAGGCCCTGTTAAGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTCTACCAATAAACCAATACATTTAATAAGGCCCTGTTAAGAG  195

seq1  TATTTTTATGTCACCACTCTGTTCAGAAGACCAATTACGCTTCCCAGGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATGTCACCACTCTGTTCAGAAGACCAATTACGCTTCCCAGGCT  245

seq1  AAGCTCATGAATGAATTATATTATAGCAGATCAGATATGCCTATTCTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATGAATGAATTATATTATAGCAGATCAGATATGCCTATTCTCTT  295

seq1  TAGGGAAAAAAAAATAACAATTACTTCAATTTTTGTGTTTCTTAAAAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAAAAAAATAACAATTACTTCAATTTTTGTGTTTCTTAAAAGTT  345

seq1  ATTTTTGCATTGTGACACATTCCATTCTTATCTAAAATTTGGAAAGGTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCATTGTGACACATTCCATTCTTATCTAAAATTTGGAAAGGTAG  395

seq1  CTTGCGTTGTTTTAAATTTTTGATTTAGTTAAGTGTTTCCTTATTCCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGTTGTTTTAAATTTTTGATTTAGTTAAGTGTTTCCTTATTCCTGC  445

seq1  AGGCTGAATTTTCATATTGGGTCTTTTTATCTTGTATGTATTTTTATTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAATTTTCATATTGGGTCTTTTTATCTTGTATGTATTTTTATTAC  495

seq1  TGCCCAGAAAATATGATTAACTTTCTATTAAATATGTGAGACGATGCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAAAATATGATTAACTTTCTATTAAATATGTGAGACGATGCAGA  545

seq1  TTTAAATGCCTCCTCCAAACAACCTTTTACCCTTTATATGTAGCAGTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGCCTCCTCCAAACAACCTTTTACCCTTTATATGTAGCAGTGTC  595

seq1  AAGGAAAATGACCTTTTATACTATATGTGTTCAAATGAAAAGTATGTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAATGACCTTTTATACTATATGTGTTCAAATGAAAAGTATGTCAA  645

seq1  GTCTAAAGTTGCTTCAGAAATAAACATATCATAAAATCTGCCACAAGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGTTGCTTCAGAAATAAACATATCATAAAATCTGCCACAAGCTG  695

seq1  CTTCAAAATCTTCTGCAGGGTTTCTTATTTTTAAACATGTTTTTCCATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATCTTCTGCAGGGTTTCTTATTTTTAAACATGTTTTTCCATCT  745

seq1  TTTATTTTAATATCTGCTGTAAAATGATCACCGTCTACTTTGGAGAGATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAATATCTGCTGTAAAATGATCACCGTCTACTTTGGAGAGATC  795

seq1  CCTGGAGACCAATACACGACCTACAACATGCACATGGCTCTGAGATTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACCAATACACGACCTACAACATGCACATGGCTCTGAGATTGCA  845

seq1  TTGCTCTGAGTTACAGTTTCTTTTCCTGAATTGCGTGTATTGTTTCTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGAGTTACAGTTTCTTTTCCTGAATTGCGTGTATTGTTTCTCTT  895

seq1  CTGTGTGAGGCCATATGCCATGAAACCCAAACCCCCAGAGAAAGTTCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGGCCATATGCCATGAAACCCAAACCCCCAGAGAAAGTTCATA  945

seq1  GATGTTATAGTGGAAACTCTGTACAAGTCCAGAATTTGGAATATTGTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATAGTGGAAACTCTGTACAAGTCCAGAATTTGGAATATTGTGAG  995

seq1  AATTCAGAGCTAAATGCAACCATTTATTGTGAGTAAAGCATTTAGTCTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGCTAAATGCAACCATTTATTGTGAGTAAAGCATTTAGTCTAC  1045

seq1  TGAATTC  1056
      |||||||
seq2  TGAATTC  1052

seq1: chr5_58119387_58120482
seq2: B6Ng01-146G03.g_65_1148

seq1  GAATTCCACTCTAATATGATGCTCCATTTTGCACCATACTCTGTCTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTAATATGATGCTCCATTTTGCACCATACTCTGTCTTCAC  50

seq1  CTTGCTTCTACGACACCTGCTGGAGCCTGCCCTTGGCCGTGGGGTGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTACGACACCTGCTGGAGCCTGCCCTTGGCCGTGGGGTGTCAG  100

seq1  CCAATCACTGTTTGTTTTCCTTGTTGTGCATTATGTTTCCAAGCTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACTGTTTGTTTTCCTTGTTGTGCATTATGTTTCCAAGCTTTTTC  150

seq1  TTACCTATTTAAGGAAAATAAATAGTTTGAAAGCAAGTTAAGGTCCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATTTAAGGAAAATAAATAGTTTGAAAGCAAGTTAAGGTCCAAAG  200

seq1  AGGCAGTATTAATACAGGCATGTATTATTCACAGATGTCTACAGTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTATTAATACAGGCATGTATTATTCACAGATGTCTACAGTTCTGT  250

seq1  TCCCAAAGAGATGGCTAGCAACCATTAACACTTGATAGGAAAAGCATTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGAGATGGCTAGCAACCATTAACACTTGATAGGAAAAGCATTCG  300

seq1  GAAGAAAACCCCCAAACATATTTTGGTAATAATAATAATTCTAAGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACCCCCAAACATATTTTGGTAATAATAATAATTCTAAGATTTT  350

seq1  GGCTTTATGTGCAAAGGGAAATTCAGTTTCTTATGTCTTCATCGACAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATGTGCAAAGGGAAATTCAGTTTCTTATGTCTTCATCGACAGTA  400

seq1  CACTAAATACTGATTTCAAATAAAACCCTAAATTGATCAGTGTTTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATACTGATTTCAAATAAAACCCTAAATTGATCAGTGTTTTTTCT  450

seq1  GTGTATTGTGATCACAACTTTTCCCAGCTAGACAGACAGTTCTTGCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTGTGATCACAACTTTTCCCAGCTAGACAGACAGTTCTTGCCAAA  500

seq1  TCTGTGTTACAATTCTGAATGTTACTATGAGCATTTGTGTTTTTACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTACAATTCTGAATGTTACTATGAGCATTTGTGTTTTTACCCAC  550

seq1  TCGTGAATATTAAAAACTTCAAGCACTTTAATAAAACATACTTGTCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAATATTAAAAACTTCAAGCACTTTAATAAAACATACTTGTCTGTG  600

seq1  ACTTTCTGAGTCTAACACAGACACTGCAATGGGTTAAATTTTCCAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGAGTCTAACACAGACACTGCAATGGGTTAAATTTTCCAAGAGG  650

seq1  TGGTTGTTGTTGACGATAAATTCATTAAGAATTTTTAAAAATTTAGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTGTTGACGATAAATTCATTAAGAATTTTTAAAAATTTAGTTAG  700

seq1  ATTTACCAAAGTCACTGGAGACAAATTCAGAAGGAATATATACCTGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCAAAGTCACTGGAGACAAATTCAGAAGGAATATATACCTGCCAG  750

seq1  TTTTGTGGACTACATTAATAGGGAGGCTTTTATGTTTGATGTAATTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGACTACATTAATAGGGAGGCTTTTATGTTTGATGTAATTCTTA  800

seq1  CAGTTCTAAGAATTAAGTTCCATTGCATGAGACCTTTTAGTTGTAGGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTAAGAATTAAGTTCCATTGCATGAGACCTTTTAGTTGTAGGAGT  850

seq1  GATGGTCTAGGTAAGTTGACATCCTCTGAACAACCTTTCTACCCCTGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCTAGGTAAGTTGACATCCTCTGAACAACCTTTCTACCCCTGACC  900

seq1  CATGTCTGTATATCTGTGCATATATTTGTTATATTGTACACTTATGTGTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGTCTGTATATCTGTGCATATATTTGTTATATTGTACACTTATGTG-T  949

seq1  GTACATGGTCTGATTCTTTTATACTTATTTGTCATGCTGTCTGCCCCCAC  1000
      ||||||||||||| ||||||||||||||||||||||||  ||||||||||
seq2  GTACATGGTCTGA-TCTTTTATACTTATTTGTCATGCTTGCTGCCCCCAC  998

seq1  CCCCCATTACAATTTTCTCCAAGTTCCTAAGTACTGGATAAGAGTTCCAT  1050
      |||||||||||   || ||| || |||||||||||||||||||  | |||
seq2  CCCCCATTACA---TTTTCCCAG-TCCTAAGTACTGGATAAGAAGTTCAT  1044

seq1  GGTCCCAAGGTTTGGTTTTCTTTTATTCTATTTCGTCTTGTATGTG  1096
      ||| |||||   ||| |||||||||||||| |||| ||||||||||
seq2  GGT-CCAAG---TGG-TTTCTTTTATTCTA-TTCGGCTTGTATGTG  1084