BAC Information

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BAC

Clone NameB6Ng01-146M01
Chromosome5 (Build37)
Map Location 150,838,833 - 150,972,515
singlet/doubletdoublet
Overlap geneRxfp2
Upstream geneHmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089
Downstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146M01.bB6Ng01-146M01.g
ACCDH943811DH943812
length9101,042
definitionDH943811|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M01, 5' end.DH943812|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,971,600 - 150,972,515)(150,838,833 - 150,839,878)
sequence
gaattcagggataaaatgggacaatggatccatataagccagaggaggga
cccaagtcatatgaccatgcattcagactgactcttttgaggcctgtgac
tgcatccgggttggtggtagggaagaaacaagaagggagagaaagtggaa
ggactcaacggttgtttcaattcagttcattttctttttaattctttaga
tttactgattttatgtctatgatttttcttgcatgtgtccatgcatcatg
tgcgtgtagtatctacagattccagaagagggtgtcggatctcctggaat
tagagtgacagctggttgtgagctgtcatgtgggtgccgggaattgaacc
tgggttctctgctagagcagccagtgcttttaattactgagcaatctctc
cagtctcagttcattttatgaaattttcattttgaggttttaagatcaca
acatttgcaataagaaagtttcttctatcagtattgagcctggattttaa
tttttgtattaacacacatacacacgcacacacacaaatctgtgttgcta
tttacacagatttattgacttcaccttatgatgcaaaccacctgatgata
ttttatttacaggatcataatgagaaattacatgtataaggctggtttgt
ttgcatatgatactcagactccctaaatgatgcttaagattcaaactcga
gtcattcacattcaaacgtttgctaaaaaaccaaattccagatgctggaa
aagataggtcacatataacgttatattctatcccttcaaaaatatctgct
caggacaagatagcatttttttttaaaggaatactgtttaaaatgttcct
tttattttttgagaatataatatgaacacaccacttcatcttcctttttc
cttccaaatc
gaattccaggcataggaaataacaggctccaaggctgactggaataaact
ggaaaagccacgtgacttaagcctaagaagtgtgagaaggtcacccagtt
cattacccaagacccccaggccaagctgagggctatgtgctgagaccata
catctcggctgatctaatctgcctatttgcccatgaggagaactgatggc
tggtcaaggttgacagctgaagtccatcacagtcaatgctgagacccagc
ccttcccaatctgcacatgaggccagctctcctcagtgctggccaactag
catctgagcggggcggccgcaccctggagtgccgagcggctgtgtgtaac
ttgttgtctcacccctgggtactcggaagcacccttcccttggatggaaa
actactctgccaacctcagcccacccctgttcctccttcacactcagttc
agaggtgggggacatggttcaggggaagaattttgcctaagcatgcagca
ggcactaagatcaatccctaatatctaagacagacaaaaacactcagttc
aatgaccctctccttctgggcatgcccatgggtaaatctccagccacgta
gagtcatgtgtgttacgttgtcacctcttggcagatgcaagcacctaaga
aaagaatcttctttgctttgttaccaccagaatgtaggatagtagggtac
acaggatgcactcaatctgtgctcagtaggggtacacagtaagcacttaa
cctgtgctcagatcagatgtacttctctgattatcagtgaacaagccaac
aagatttcttctttgctacgagggagtcaaaggccacatctgttttatct
tcccaccaccaggacgttctgaacacagactgaacaaagcacgtgtaata
gctgataatacagttaaaggcacacagcagcacaattcaggttatgaaaa
ggaatagggggctggtggagatggctcatggggaagagcacctgactgct
cttcgaaggtcgaggtcaaatcgagcatccacttggtggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150971600_150972515
seq2: B6Ng01-146M01.b_47_956 (reverse)

seq1  GATTTGGAACGGAAAAAGGGAAGATGGAAGTGGTGTGGTCATATTATAAT  50
      ||||||||| ||||||| ||||||| ||||||||||| |||||||||| |
seq2  GATTTGGAA-GGAAAAA-GGAAGAT-GAAGTGGTGTGTTCATATTATATT  47

seq1  CTCAAAAAATAAAAGGAACATTTTAAAGCAGTATTTCTTTAAAAAAAAAA  100
      ||||||||||||||||||||||||||| ||||||| ||||  ||||||||
seq2  CTCAAAAAATAAAAGGAACATTTTAAA-CAGTATTCCTTT--AAAAAAAA  94

seq1  ATGCTATCTTGTCCTGAGCAGATATTTTTGAAGGGATAGAATATAACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCTTGTCCTGAGCAGATATTTTTGAAGGGATAGAATATAACGTT  144

seq1  AATATGTGACCTATCTTTTCCAGCATCTGGAATTTGGTTTTTTAGCAAAC  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATATGTGACCTATCTTTTCCAGCATCTGGAATTTGGTTTTTTAGCAAAC  193

seq1  GTTTGAATGTGAATGACTCGAGTTTGAATCTTAAGCATCATTTAGGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATGTGAATGACTCGAGTTTGAATCTTAAGCATCATTTAGGGAGT  243

seq1  CTGAGTATCATATGCAAACAAACCAGCCTTATACATGTAATTTCTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATCATATGCAAACAAACCAGCCTTATACATGTAATTTCTCATTA  293

seq1  TGATCCTGTAAAT-AAATATCATCAGGTGGTTTGCATCATAAGGTGAAGT  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGTAAATAAAATATCATCAGGTGGTTTGCATCATAAGGTGAAGT  343

seq1  CAATAAATCTGTGTAAATAGCAACACAGATTTGTGTGTGTGCGTGTGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATCTGTGTAAATAGCAACACAGATTTGTGTGTGTGCGTGTGTAT  393

seq1  GTGTGTTAATACAAAAATTAAAATCCAGGCTCAATACTGATAGAAGAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTAATACAAAAATTAAAATCCAGGCTCAATACTGATAGAAGAAAC  443

seq1  TTTCTTATTGCAAATGTTGTGATCTTAAAACCTCAAAATGAAAATTTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTGCAAATGTTGTGATCTTAAAACCTCAAAATGAAAATTTCAT  493

seq1  AAAATGAACTGAGACTGGAGAGATTGCTCAGTAATTAAAAGCACTGGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACTGAGACTGGAGAGATTGCTCAGTAATTAAAAGCACTGGCTG  543

seq1  CTCTAGCAGAGAACCCAGGTTCAATTCCCGGCACCCACATGACAGCTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCAGAGAACCCAGGTTCAATTCCCGGCACCCACATGACAGCTCAC  593

seq1  AACCAGCTGTCACTCTAATTCCAGGAGATCCGACACCCTCTTCTGGAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTGTCACTCTAATTCCAGGAGATCCGACACCCTCTTCTGGAATC  643

seq1  TGTAGATACTACACGCACATGATGCATGGACACATGCAAGAAAAATCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATACTACACGCACATGATGCATGGACACATGCAAGAAAAATCATA  693

seq1  GACATAAAATCAGTAAATCTAAAGAATTAAAAAGAAAATGAACTGAATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAAATCAGTAAATCTAAAGAATTAAAAAGAAAATGAACTGAATTG  743

seq1  AAACAACCGTTGAGTCCTTCCACTTTCTCTCCCTTCTTGTTTCTTCCCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCGTTGAGTCCTTCCACTTTCTCTCCCTTCTTGTTTCTTCCCTA  793

seq1  CCACCAACCCGGATGCAGTCACAGGCCTCAAAAGAGTCAGTCTGAATGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACCCGGATGCAGTCACAGGCCTCAAAAGAGTCAGTCTGAATGCA  843

seq1  TGGTCATATGACTTGGGTCCCTCCTCTGGCTTATATGGATCCATTGTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATATGACTTGGGTCCCTCCTCTGGCTTATATGGATCCATTGTCCC  893

seq1  ATTTTATCCCTGAATTC  916
      |||||||||||||||||
seq2  ATTTTATCCCTGAATTC  910

seq1: chr5_150838833_150839878
seq2: B6Ng01-146M01.g_66_1107

seq1  GAATTCCAGGCATAGGAAATAACAGGCTCCAAGGCTGACTGGAATAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCATAGGAAATAACAGGCTCCAAGGCTGACTGGAATAAACT  50

seq1  GGAAAAGCCACGTGACTTAAGCCTAAGAAGTGTGAGAAGGTCACCCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCCACGTGACTTAAGCCTAAGAAGTGTGAGAAGGTCACCCAGTT  100

seq1  CATTACCCAAGACCCCCAGGCCAAGCTGAGGGCTATGTGCTGAGACCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCAAGACCCCCAGGCCAAGCTGAGGGCTATGTGCTGAGACCATA  150

seq1  CATCTCGGCTGATCTAATCTGCCTATTTGCCCATGAGGAGAACTGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCGGCTGATCTAATCTGCCTATTTGCCCATGAGGAGAACTGATGGC  200

seq1  TGGTCAAGGTTGACAGCTGAAGTCCATCACAGTCAATGCTGAGACCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGGTTGACAGCTGAAGTCCATCACAGTCAATGCTGAGACCCAGC  250

seq1  CCTTCCCAATCTGCACATGAGGCCAGCTCTCCTCAGTGCTGGCCAACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAATCTGCACATGAGGCCAGCTCTCCTCAGTGCTGGCCAACTAG  300

seq1  CATCTGAGCGGGGCGGCCGCACCCTGGAGTGCCGAGCGGCTGTGTGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGCGGGGCGGCCGCACCCTGGAGTGCCGAGCGGCTGTGTGTAAC  350

seq1  TTGTTGTCTCACCCCTGGGTACTCGGAAGCACCCTTCCCTTGGATGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCTCACCCCTGGGTACTCGGAAGCACCCTTCCCTTGGATGGAAA  400

seq1  ACTACTCTGCCAACCTCAGCCCACCCCTGTTCCTCCTTCACACTCAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTGCCAACCTCAGCCCACCCCTGTTCCTCCTTCACACTCAGTTC  450

seq1  AGAGGTGGGGGACATGGTTCAGGGGAAGAATTTTGCCTAAGCATGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGGGACATGGTTCAGGGGAAGAATTTTGCCTAAGCATGCAGCA  500

seq1  GGCACTAAGATCAATCCCTAATATCTAAGACAGACAAAAACACTCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAAGATCAATCCCTAATATCTAAGACAGACAAAAACACTCAGTTC  550

seq1  AATGACCCTCTCCTTCTGGGCATGCCCATGGGTAAATCTCCAGCCACGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCCTCTCCTTCTGGGCATGCCCATGGGTAAATCTCCAGCCACGTA  600

seq1  GAGTCATGTGTGTTACGTTGTCACCTCTTGGCAGATGCAAGCACCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGTGTGTTACGTTGTCACCTCTTGGCAGATGCAAGCACCTAAGA  650

seq1  AAAGAATCTTCTTTGCTTTGTTACCACCAGAATGTAGGATAGTAGGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCTTCTTTGCTTTGTTACCACCAGAATGTAGGATAGTAGGGTAC  700

seq1  ACAGGAGGCACTCAATCTGTGCTCAGTA-GGGTACACAGTAAGCACTTAA  749
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAGGATGCACTCAATCTGTGCTCAGTAGGGGTACACAGTAAGCACTTAA  750

seq1  CCTGTGCTCAGATCAGATGTACTTCTCTGATTATCAGTGAACAAGCCAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTCAGATCAGATGTACTTCTCTGATTATCAGTGAACAAGCCAAC  800

seq1  AAGATTTCTTCTTTGCTACGAGGGAGTCAAAGGCCACATCTG-TTTATCT  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGATTTCTTCTTTGCTACGAGGGAGTCAAAGGCCACATCTGTTTTATCT  850

seq1  ACCCACCACCAGGACGTTCTGAACACAGACTGAACAAAGCACGTGGAATA  898
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCCACCACCAGGACGTTCTGAACACAGACTGAACAAAGCACGTGTAATA  900

seq1  GCTGATAATACAGTTAAAGGCACCACAGCAGCACAATTCAGGATATGAAA  948
      |||||||||||||||||||||| ||||||||||||||||||| |||| ||
seq2  GCTGATAATACAGTTAAAGGCA-CACAGCAGCACAATTCAGGTTATG-AA  948

seq1  AAGGAATAGGGGGCTGGT-GAGATGGCTCAGTGGGGAAGAGCACCTGACT  997
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  AAGGAATAGGGGGCTGGTGGAGATGGCTCA-TGGGGAAGAGCACCTGACT  997

seq1  GCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTC  1046
      |||||| ||||||||  ||| |||||| | |||| |||| |||||||||
seq2  GCTCTT-CGAAGGTC--GAGGTCAAAT-CGAGCATCCACTTGGTGGCTC  1042