BAC Information

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BAC

Clone NameB6Ng01-146M05
Chromosome5 (Build37)
Map Location 9,939,127 - 10,060,195
singlet/doubletdoublet
Overlap geneLOC100042768
Upstream geneAbcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146M05.bB6Ng01-146M05.g
ACCDH943819DH943820
length9451,100
definitionDH943819|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M05, 5' end.DH943820|Mus musculus domesticus DNA, BAC clone: B6Ng01-146M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,059,571 - 10,060,195)(9,939,127 - 9,940,226)
sequence
gaattcttaagtaataaaattatagctttgatctaaataactcaatagct
accctttaaaaataacttttttgttgtacttgtaacaaactacgataaaa
tattgtgcaagtagcaagtattcttttatttttaaatgttttattagata
ttttcttcatttacatttcaaatgctatcttgaaagtcctctatacactt
ctcccaccctgttccactacctacccactctcacttcttggccctggcgt
tcccctgtactggggcatataaagtttgcaagaccaaggggcctctcttc
tcaatgatggttgactaggccatcttctgctacatatgcagccagagaac
caagcgctggggttcatattgttgttccacctataggattgcagacctct
tcagctccttgggtactttctctagtttctccattgggggccctgcattc
catcctatagatgactgtgagcctccacttctgtatttgccaggcactgg
catagcctcacaagagacagcagtatcagggtcctttcagcaaaatcttg
ctgtcatatacaatagtgtctgtgtttggtgactgattatggaatggacc
cccgggtggggcagtctctggatggtccatcctttcctcttagttccaaa
ttttgtctctgtatctccttccatgggtattttggaaatcagtctggtgg
ttcctcagaaaattagacatagtactaccggaagatccagcaatacctct
cctgagcatatatgttacagaagatgttccaattggtaataagaacacat
gctccactatgttcatagcagccttatttataataggcagaagctggaaa
gagcccagatgtcccccaacagaggaatggatacagaaaatgtggtacat
ttacacaatggaatactgctcacctattaaaaacatgaatttatg
gaattctccctcatctctagcgttcttttgctttctactcaaggaatatt
tataataaattaatagtattgttcttattaacaagcaatgccaaaattat
attcaatttgtattttaaagacttgaagtactccaaatcaacagaaactt
tgacaataaaaatcatttaagtatctaaataaacaaacaaaatagaaacc
atcaagagtgtttgaatcttaatactttatgcagagaaataatttcttgg
gctttcagtggctattattccaatagtttgaaagtctagttaaatagaat
ttctttgttagtaaatgtctgacctctttaatatttaatgatttgaatta
aacactcactgactgagcctaattttaccattattgaaaattttcatagg
aatggcctcagtgcaacaagaaaatattgatcatcagtatgcttcaatga
aagtagatgttcctggagacttttagtttcttctctcatatattatatcc
caactgcagtttcccttcccacctctcgtcccaattcttttcctctccca
ctcccaaatctattgctcctccatttcacttcagaaaagggcaaacctcc
cagagatatcaaccaaacactgcaaatcaagttgcaataagactagacac
ttcccctcatattatgactggaagaggcaactcacccaataggaaaaaaa
agtgacccaaaggcagacaaaagagtcagagacagtccctgttctcactg
ttaggagtcccataagaacaccaagacacacacaactataacacttatgt
agagggcctagatcagaacacacaagttccttgattgtcaattcagtctc
tgagctcctatgagcccagctaagttgattctatggaccatagtcttgtc
gcctagagaccttttgaaggctaactattgtaaaagcaatcacttcattc
tttggaggatggacacctagagtagctgggaagtttgaatggatgcccaa
agatcccgaactaaattctggaacatttgaatttaagttataaaagatta
agcaggtgatcaaagctttttctggttttgaacacagtcaagaagagcca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10059571_10060195
seq2: B6Ng01-146M05.b_43_667 (reverse)

seq1  CCATCCAGAGACTGCCCCACCCGGGGGTCCATTCCATAATCAGTCACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGAGACTGCCCCACCCGGGGGTCCATTCCATAATCAGTCACCAA  50

seq1  ACACAGACACTATTGTATATGACAGCAAGATTTTGCTGAAAGGACCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACTATTGTATATGACAGCAAGATTTTGCTGAAAGGACCCTGA  100

seq1  TACTGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTG  150

seq1  GAGGCTCACAGTCATCTATAGGATGGAATGCAGGGCCCCCAATGGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCACAGTCATCTATAGGATGGAATGCAGGGCCCCCAATGGAGAAA  200

seq1  CTAGAGAAAGTACCCAAGGAGCTGAAGAGGTCTGCAATCCTATAGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTGAAGAGGTCTGCAATCCTATAGGTGGA  250

seq1  ACAACAATATGAACCCCAGCGCTTGGTTCTCTGGCTGCATATGTAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATATGAACCCCAGCGCTTGGTTCTCTGGCTGCATATGTAGCAGA  300

seq1  AGATGGCCTAGTCAACCATCATTGAGAAGAGAGGCCCCTTGGTCTTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCTAGTCAACCATCATTGAGAAGAGAGGCCCCTTGGTCTTGCAA  350

seq1  ACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGAGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGAGAGTG  400

seq1  GGTAGGTAGTGGAACAGGGTGGGAGAAGTGTATAGAGGACTTTCAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTAGTGGAACAGGGTGGGAGAAGTGTATAGAGGACTTTCAAGATA  450

seq1  GCATTTGAAATGTAAATGAAGAAAATATCTAATAAAACATTTAAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGAAATGTAAATGAAGAAAATATCTAATAAAACATTTAAAAATAA  500

seq1  AAGAATACTTGCTACTTGCACAATATTTTATCGTAGTTTGTTACAAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTTGCTACTTGCACAATATTTTATCGTAGTTTGTTACAAGTAC  550

seq1  AACAAAAAAGTTATTTTTAAAGGGTAGCTATTGAGTTATTTAGATCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAGTTATTTTTAAAGGGTAGCTATTGAGTTATTTAGATCAAAG  600

seq1  CTATAATTTTATTACTTAAGAATTC  625
      |||||||||||||||||||||||||
seq2  CTATAATTTTATTACTTAAGAATTC  625

seq1: chr5_9939127_9940226
seq2: B6Ng01-146M05.g_68_1167

seq1  GAATTCTCCCTCATCTCTAGCGTTCTTTTGCTTTCTACTCAAGGAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCATCTCTAGCGTTCTTTTGCTTTCTACTCAAGGAATATT  50

seq1  TATAATAAATTAATAGTATTGTTCTTATTAACAAGCAATGCCAAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATTAATAGTATTGTTCTTATTAACAAGCAATGCCAAAATTAT  100

seq1  ATTCAATTTGTATTTTAAAGACTTGAAGTACTCCAAATCAACAGAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTGTATTTTAAAGACTTGAAGTACTCCAAATCAACAGAAACTT  150

seq1  TGACAATAAAAATCATTTAAGTATCTAAATAAACAAACAAAATAGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAAAAATCATTTAAGTATCTAAATAAACAAACAAAATAGAAACC  200

seq1  ATCAAGAGTGTTTGAATCTTAATACTTTATGCAGAGAAATAATTTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGTGTTTGAATCTTAATACTTTATGCAGAGAAATAATTTCTTGG  250

seq1  GCTTTCAGTGGCTATTATTCCAATAGTTTGAAAGTCTAGTTAAATAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGTGGCTATTATTCCAATAGTTTGAAAGTCTAGTTAAATAGAAT  300

seq1  TTCTTTGTTAGTAAATGTCTGACCTCTTTAATATTTAATGATTTGAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTAGTAAATGTCTGACCTCTTTAATATTTAATGATTTGAATTA  350

seq1  AACACTCACTGACTGAGCCTAATTTTACCATTATTGAAAATTTTCATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCACTGACTGAGCCTAATTTTACCATTATTGAAAATTTTCATAGG  400

seq1  AATGGCCTCAGTGCAACAAGAAAATATTGATCATCAGTATGCTTCAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTCAGTGCAACAAGAAAATATTGATCATCAGTATGCTTCAATGA  450

seq1  AAGTAGATGTTCCTGGAGACTTTTAGTTTCTTCTCTCATATATTATATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATGTTCCTGGAGACTTTTAGTTTCTTCTCTCATATATTATATCC  500

seq1  CAACTGCAGTTTCCCTTCCCACCTCTCGTCCCAATTCTTTTCCTCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAGTTTCCCTTCCCACCTCTCGTCCCAATTCTTTTCCTCTCCCA  550

seq1  CTCCCAAATCTATTGCTCCTCCATTTCACTTCAGAAAAGGGCAAACCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATCTATTGCTCCTCCATTTCACTTCAGAAAAGGGCAAACCTCC  600

seq1  CAGAGATATCAACCAAACACTGCAAATCAAGTTGCAATAAGACTAGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATATCAACCAAACACTGCAAATCAAGTTGCAATAAGACTAGACAC  650

seq1  TTCCCCTCATATTATGACTGGAAGAGGCAACTCACCCAATAGGAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCATATTATGACTGGAAGAGGCAACTCACCCAATAGGAAAAAAA  700

seq1  AGTGACCCAAAGGCAGACAAAAGAGTCAGAGACAGTCCCTGTTCTCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCCAAAGGCAGACAAAAGAGTCAGAGACAGTCCCTGTTCTCACTG  750

seq1  TTAGGAGTCCCATAAGAACACCAAGACACACACAACTATAACACTTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTCCCATAAGAACACCAAGACACACACAACTATAACACTTATGT  800

seq1  AGAGGGCCTAGATCAGAACACACAAGTTCCTTGATTGTCAATTCAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCCTAGATCAGAACACACAAGTTCCTTGATTGTCAATTCAGTCTC  850

seq1  TGAGCTCCTATGAGCCCAGCTAAGTTGATTCTATGGACCATAGTCTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCTATGAGCCCAGCTAAGTTGATTCTATGGACCATAGTCTTGTC  900

seq1  GCCTAGAGACCTTTTGAAGGCTAACTATTGTAAAAGCAATCAC-TCATTC  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCTAGAGACCTTTTGAAGGCTAACTATTGTAAAAGCAATCACTTCATTC  950

seq1  TTTGGAGGATGGACACCTAGAGTAGCTGGGAAGTTTGAATGGATGCCCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGATGGACACCTAGAGTAGCTGGGAAGTTTGAATGGATGCCCAA  1000

seq1  AGATCCCGAACTAAATTCTTGGAACATTTGAATTTAGGTATTAGAGAATT  1049
      |||||||||||||||||| ||||||||||||||||| ||  || |  |||
seq2  AGATCCCGAACTAAATTC-TGGAACATTTGAATTTAAGTTATAAAAGATT  1049

seq1  AGGCAGGTGATCAAAGC-TTTTCTGGTTTTGAACACAGTCAAGAAAGAGC  1098
      | ||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  AAGCAGGTGATCAAAGCTTTTTCTGGTTTTGAACACAGTCAAG-AAGAGC  1098

seq1  CA  1100
      ||
seq2  CA  1100