BAC Information

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BAC

Clone NameB6Ng01-147D06
Chromosome5 (Build37)
Map Location 12,843,630 - 13,017,163
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147D06.bB6Ng01-147D06.g
ACCDH944149DH944150
length1,0661,053
definitionDH944149|Mus musculus domesticus DNA, BAC clone: B6Ng01-147D06, 5' end.DH944150|Mus musculus domesticus DNA, BAC clone: B6Ng01-147D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,016,090 - 13,017,163)(12,843,630 - 12,844,711)
sequence
gaattctttgttcagttctgagccccattttttaatggagttgaaaatag
tttttaatatccctcctcaacaatacttctttctatatctaaggagagga
aacaaatttatctatgaagatataaatactatgaaatataaatacttttc
tgagtagaaaaggatataagtggagatagtttgctgagtttctgccaatt
catggccattcttttgtactcttttcttcaaattatgttgatatataaat
acactgaactttatcaggctgagcatgcaatatatgtacagcattgcttt
ttgtttcctttgagaatgacctgaaaaagattttatgttgcatacttttt
tttaaatcttccttctatattgtgagtgtgattgaccacgaaactctaaa
tttaatttcctatatggataggaaggtgaatgcaggcagattttctatca
tatgtaacccgatatttgaggaaagtgtttgagattgtggaaattcagat
tcagcctagtcctgtatcatatgagaatgtgcttgggtaacaagacaatc
tacagctaataggcccccgaagaacatatcttctgcatggcatctagcat
ttgtagactggggggagaactaaatatctatagagaaggaaaggacactg
ctaaatgggttcctaaggagtctttatgaacatgaagagaaaacttgtca
ccttttttgcatgagcactgcaatataattttttaaaaagatattttgca
tgaagtgtaggttggtcaaaatccttgaattaagaatgactaagttctga
ggtaagcaatatatatatggatggtatctgtcattttgtaactgaaaaaa
ttcaactgtggaggagcctatcacccttattaactaaactttacacctga
ggcctatccaggacaggagcagagaagaagacattatcagatagaaagca
gttctcttacattttggacatggcttctctgaaactctggaaagagacat
cagtgaaactacaaatacattttcctgctgaatatggagatatgtgaaat
ctcctcatagttggtt
gaattctttgagcaaaatatatcaagatcccaaaatgcattaaaaatata
gttacttcaggctggtcagtggtggtctggcacccacttttaatcccagc
ccttgagaagaagaggacatcatatctctgtgagtttgaggccaatctgg
ttaacaaaatgagttccaggatgagcagggctacaaagtacaatgtcttc
tagacacaattaatattacagtttcgattatctttttaaattattggcaa
ataacaaattttatttactattattcacatcctaaagctatttatgtaag
tcaagtaaattccttaaagccaaaaccctttaccaacagaaatccttagt
tcattgtcaaatccaatgtgtaagtttcggttaaattagcactttcatct
taaatctctataaatcccagtgctatcaatatttttattataatattctt
aggaacatgccttcacaatatgtttatctggtgttagcagtgtcttttat
actgtgttttaattggattctattttcattacgaagatattataccagaa
atgtgtggggcaggttgtactcttatatttatgtagaaaacagtgggcac
ttataaataacataataattgtcttagagatgtaaatgagaatgcatggg
gcttgagcattagaactcagaacaacagtagagtttagataccgagtatc
cattttgtatttcatttatcttggttaatgaattcttttttttttttttt
ttttgagagatcaaaacaatttcctaggcaatcaaagttttttttttttt
tccctaaacaactttttgatgagttaagtgtaaatgaatcagaaccatat
gggaaaagtttcccttagaacacacactgccttagtggaaaagtgtttat
gagaatggattttggtttttaaaattttaaaatattttggggatagctta
cattcaaatgtgttactcatctgtcctgtatatagaatcaaagaaatctg
agcacactttagggctagttatcagtgaatccaaatctgatgtttcagac
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13016090_13017163
seq2: B6Ng01-147D06.b_47_1112 (reverse)

seq1  AACCAAACTATGAAGGAGATTTCACATATCTCCATATACAGCAAGGAAAA  50
      |||| ||||||| |||||||||||||||||||||||| |||| |||||||
seq2  AACC-AACTATG-AGGAGATTTCACATATCTCCATATTCAGC-AGGAAAA  47

seq1  TGTATTTGTAGTTTCACCTGATGTTCTTCTTTCCAGAGTTTCAGAGAAGC  100
      |||||||||||||||| |||||||   |||||||||||||||||||||||
seq2  TGTATTTGTAGTTTCA-CTGATGT--CTCTTTCCAGAGTTTCAGAGAAGC  94

seq1  CATGTCCAAAAATGTAAAGAGAACTGCTTTCTATCTGATAATGTCTTCTT  150
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  CATGTCC-AAAATGT-AAGAGAACTGCTTTCTATCTGATAATGTCTTCTT  142

seq1  CTCTGCTCCTGTCCTGGATAGGCCTCAGGTGTAAAGTTTAGTTAATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCCTGTCCTGGATAGGCCTCAGGTGTAAAGTTTAGTTAATAAGG  192

seq1  GTGATAGGCTCCTCCACAGTTGAATTTTTTCAGTTACAAAATGACAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGCTCCTCCACAGTTGAATTTTTTCAGTTACAAAATGACAGATA  242

seq1  CCATCCATATATATATTGCTTACCTCAGAACTTAGTCATTCTTAATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATATATATATTGCTTACCTCAGAACTTAGTCATTCTTAATTCAA  292

seq1  GGATTTTGACCAACCTACACTTCATGCAAAATATCTTTTTAAAAAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGACCAACCTACACTTCATGCAAAATATCTTTTTAAAAAATTAT  342

seq1  ATTGCAGTGCTCATGCAAAAAAGGTGACAAGTTTTCTCTTCATGTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTGCTCATGCAAAAAAGGTGACAAGTTTTCTCTTCATGTTCATA  392

seq1  AAGACTCCTTAGGAACCCATTTAGCAGTGTCCTTTCCTTCTCTATAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCTTAGGAACCCATTTAGCAGTGTCCTTTCCTTCTCTATAGATA  442

seq1  TTTAGTTCTCCCCCCAGTCTACAAATGCTAGATGCCATGCAGAAGATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTCCCCCCAGTCTACAAATGCTAGATGCCATGCAGAAGATATG  492

seq1  TTCTTCGGGGGCCTATTAGCTGTAGATTGTCTTGTTACCCAAGCACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGGGGGCCTATTAGCTGTAGATTGTCTTGTTACCCAAGCACATTC  542

seq1  TCATATGATACAGGACTAGGCTGAATCTGAATTTCCACAATCTCAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGATACAGGACTAGGCTGAATCTGAATTTCCACAATCTCAAACAC  592

seq1  TTTCCTCAAATATCGGGTTACATATGATAGAAAATCTGCCTGCATTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAAATATCGGGTTACATATGATAGAAAATCTGCCTGCATTCACC  642

seq1  TTCCTATCCATATAGGAAATTAAATTTAGAGTTTCGTGGTCAATCACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATCCATATAGGAAATTAAATTTAGAGTTTCGTGGTCAATCACACT  692

seq1  CACAATATAGAAGGAAGATTTAAAAAAAAGTATGCAACATAAAATCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATAGAAGGAAGATTTAAAAAAAAGTATGCAACATAAAATCTTTT  742

seq1  TCAGGTCATTCTCAAAGGAAACAAAAAGCAATGCTGTACATATATTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCATTCTCAAAGGAAACAAAAAGCAATGCTGTACATATATTGCAT  792

seq1  GCTCAGCCTGATAAAGTTCAGTGTATTTATATATCAACATAATTTGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCTGATAAAGTTCAGTGTATTTATATATCAACATAATTTGAAGA  842

seq1  AAAGAGTACAAAAGAATGGCCATGAATTGGCAGAAACTCAGCAAACTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTACAAAAGAATGGCCATGAATTGGCAGAAACTCAGCAAACTATC  892

seq1  TCCACTTATATCCTTTTCTACTCAGAAAAGTATTTATATTTCATAGTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTATATCCTTTTCTACTCAGAAAAGTATTTATATTTCATAGTATT  942

seq1  TATATCTTCATAGATAAATTTGTTTCCTCTCCTTAGATATAGAAAGAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTCATAGATAAATTTGTTTCCTCTCCTTAGATATAGAAAGAAGT  992

seq1  ATTGTTGAGGAGGGATATTAAAAACTATTTTCAACTCCATTAAAAAATGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGAGGAGGGATATTAAAAACTATTTTCAACTCCATTAAAAAATGG  1042

seq1  GGCTCAGAACTGAACAAAGAATTC  1074
      ||||||||||||||||||||||||
seq2  GGCTCAGAACTGAACAAAGAATTC  1066

seq1: chr5_12843630_12844711
seq2: B6Ng01-147D06.g_69_1121

seq1  GAATTCTTTGAGCAAAATATATCAAGATCCCAAAATGCATTAAAAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGCAAAATATATCAAGATCCCAAAATGCATTAAAAATATA  50

seq1  GTTACTTCAGGCTGGTCAGTGGTGGTCTGGCACCCACTTTTAATCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTCAGGCTGGTCAGTGGTGGTCTGGCACCCACTTTTAATCCCAGC  100

seq1  CCTTGAGAAGAAGAGGACATCATATCTCTGTGAGTTTGAGGCCAATCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAAGAAGAGGACATCATATCTCTGTGAGTTTGAGGCCAATCTGG  150

seq1  TTAACAAAATGAGTTCCAGGATGAGCAGGGCTACAAAGTACAATGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAATGAGTTCCAGGATGAGCAGGGCTACAAAGTACAATGTCTTC  200

seq1  TAGACACAATTAATATTACAGTTTCGATTATCTTTTTAAATTATTGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAATTAATATTACAGTTTCGATTATCTTTTTAAATTATTGGCAA  250

seq1  ATAACAAATTTTATTTACTATTATTCACATCCTAAAGCTATTTATGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAATTTTATTTACTATTATTCACATCCTAAAGCTATTTATGTAAG  300

seq1  TCAAGTAAATTCCTTAAAGCCAAAACCCTTTACCAACAGAAATCCTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAAATTCCTTAAAGCCAAAACCCTTTACCAACAGAAATCCTTAGT  350

seq1  TCATTGTCAAATCCAATGTGTAAGTTTCGGTTAAATTAGCACTTTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCAAATCCAATGTGTAAGTTTCGGTTAAATTAGCACTTTCATCT  400

seq1  TAAATCTCTATAAATCCCAGTGCTATCAATATTTTTATTATAATATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCTATAAATCCCAGTGCTATCAATATTTTTATTATAATATTCTT  450

seq1  AGGAACATGCCTTCACAATATGTTTATCTGGTGTTAGCAGTGTCTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATGCCTTCACAATATGTTTATCTGGTGTTAGCAGTGTCTTTTAT  500

seq1  ACTGTGTTTTAATTGGATTCTATTTTCATTACGAAGATATTATACCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTTTAATTGGATTCTATTTTCATTACGAAGATATTATACCAGAA  550

seq1  ATGTGTGGGGCAGGTTGTACTCTTATATTTATGTAGAAAACAGTGGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGGGCAGGTTGTACTCTTATATTTATGTAGAAAACAGTGGGCAC  600

seq1  TTATAAATAACATAATAATTGTCTTAGAGATGTAAATGAGAATGCATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAACATAATAATTGTCTTAGAGATGTAAATGAGAATGCATGGG  650

seq1  GCTTGAGCATTAGAACTCAGAACAACAGTAGAGTTTAGATACCGAGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCATTAGAACTCAGAACAACAGTAGAGTTTAGATACCGAGTATC  700

seq1  CATTTTGTATTTCATTTATCTTGGTTAATGAATTC-TTTTTTTTTTTTTT  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATTTTGTATTTCATTTATCTTGGTTAATGAATTCTTTTTTTTTTTTTTT  750

seq1  TTTTGAGAGATCAAAACAATTTCCTAGGCAATCAAAG-TTTTTTTTTTTT  798
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTGAGAGATCAAAACAATTTCCTAGGCAATCAAAGTTTTTTTTTTTTT  800

seq1  TCCCTAAACAAC-TTTTGATGAGTTAAGTGTAAATGAATCAGAACCATAT  847
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAACAACTTTTTGATGAGTTAAGTGTAAATGAATCAGAACCATAT  850

seq1  GGGAAAAGTTTCCCTTAGAACACACACTGCCTTAGTGGAAAAAGTGTTTA  897
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGAAAAGTTTCCCTTAGAACACACACTGCCTTAGTGG-AAAAGTGTTTA  899

seq1  TGAGAATGGATTTTGGTTTTTAAAAATTTTAAAAATATTTTGGGGAATAG  947
      |||||||||||||||||||||||||  ||| |||||||||||||| ||||
seq2  TGAGAATGGATTTTGGTTTTTAAAA--TTTTAAAATATTTTGGGG-ATAG  946

seq1  CTTAACAATTCCAAATGTGGTTTACTCATCTGTTCCTGGTATAATAGACA  997
      ||| |||  | ||||||||  ||||||||||| |||| |||| ||||| |
seq2  CTT-ACA--TTCAAATGTG--TTACTCATCTG-TCCT-GTAT-ATAGA-A  987

seq1  TCAAAGGAAATTCCTGGAAGCCAAACAACTTTAGGGCATAGTTAATCAGG  1047
      ||||| |||||  |||  |||   || |||||||||| ||||| ||||  
seq2  TCAAA-GAAAT--CTG--AGC---AC-ACTTTAGGGC-TAGTT-ATCA--  1024

seq1  GTGATATCCCAAAATCTGATGTTTATCAAGACTCT  1082
      |||| ||||  |||||||||||||    |||||||
seq2  GTGA-ATCC--AAATCTGATGTTT---CAGACTCT  1053