BAC Information

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BAC

Clone NameB6Ng01-147G22
Chromosome5 (Build37)
Map Location 52,886,312 - 53,028,235
singlet/doubletdoublet
Overlap geneLgi2, LOC545750
Upstream genePpargc1a, Dhx15, Sod3, Gm447, LOC100041805
Downstream geneD5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147G22.bB6Ng01-147G22.g
ACCDH944316DH944317
length245947
definitionDH944316|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G22, 5' end.DH944317|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,027,991 - 53,028,235)(52,886,312 - 52,887,258)
sequence
ctgccccttctgtcctccatgacagactgtggttagaagcctaagatgaa
ataaactcttcccgtagattgctttaggtcagagggttttatcaccacag
caggaaagcaaactagatcactaagcgacctgaccttccgaaagctaact
tttgactcatctgaaaggataacaagacctcccgggactgagataaacat
ccagtgaaattttatgtgtgggaagtggctgggggagggaggatg
gaattctaagaggggcctaggattggcagtttagttcccctgcacaaact
agacctggctccccatttgaacggcctcatcagcaaagagcaaaatacaa
aattggctcagtgcttcatttctctcggagtcaagtgcagttctagacat
tctgctggttttctgaaatgctttttcacacaactggaaccttttccaag
gaagatcttcaacggggttgatcttgtgttagtttcccttccagaattgc
cagactgctcctgcagccccagaatttgttgttatttttgtccccttaaa
aagctacaggtcatcacagaagatataacggggtctttgggggcactggg
ggcaggcaggcagaagcaaaagtaaaggtaagacactcaggaaagaccgg
agccgctttgtttgtattgtgtttgattttgtgcttaagagactgttaaa
ttgaagcaggaaagtgtgcctgctaagtctatttggccttcttttgagtc
cctaaactctgtaaataaatctaggtctcccagaggactttcctttgcta
aagtgtgggctcctggtaagctataatccccttcccctggcagtgagcct
tctacagactaaatttagaaaaattaaattacaacccggcactgtggctc
ccgaaatgaaatgtataggacagaatacctgaaaacaccagagagaatgt
tgctcagacagaagagtcggggcctggtgatcaatctcacacgtctacac
agagaggcagaggtcctgatcgtttagagagaaaatggaaccgcgccagc
caatttggaaccatcagagcaatgatcggggagaggagcccccgtctaat
tatgcctctgcgttccaaccaggcatgaaagaaatcacagtcaacctgtg
actgagaaaggtgactgcagtgtgccgcatccggggtgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_53027991_53028235
seq2: B6Ng01-147G22.b_52_296 (reverse)

seq1  CATCCTCCCTCCCCCAGCCACTTCCCACACATAAAATTTCACTGGATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCCTCCCCCAGCCACTTCCCACACATAAAATTTCACTGGATGTT  50

seq1  TATCTCAGTCCCGGGAGGTCTTGTTATCCTTTCAGATGAGTCAAAAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGTCCCGGGAGGTCTTGTTATCCTTTCAGATGAGTCAAAAGTTA  100

seq1  GCTTTCGGAAGGTCAGGTCGCTTAGTGATCTAGTTTGCTTTCCTGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCGGAAGGTCAGGTCGCTTAGTGATCTAGTTTGCTTTCCTGCTGTG  150

seq1  GTGATAAAACCCTCTGACCTAAAGCAATCTACGGGAAGAGTTTATTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAAACCCTCTGACCTAAAGCAATCTACGGGAAGAGTTTATTTCAT  200

seq1  CTTAGGCTTCTAACCACAGTCTGTCATGGAGGACAGAAGGGGCAG  245
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTTCTAACCACAGTCTGTCATGGAGGACAGAAGGGGCAG  245

seq1: chr5_52886312_52887258
seq2: B6Ng01-147G22.g_66_1012

seq1  GAATTCTAAGAGGGGCCTAGGATTGGCAGTTTAGTTCCCCTGCACAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAGGGGCCTAGGATTGGCAGTTTAGTTCCCCTGCACAAACT  50

seq1  AGACCTGGCTCCCCATTTGAACGGCCTCATCAGCAAAGAGCAAAATACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGCTCCCCATTTGAACGGCCTCATCAGCAAAGAGCAAAATACAA  100

seq1  AATTGGCTCAGTGCTTCATTTCTCTCGGAGTCAAGTGCAGTTCTAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTCAGTGCTTCATTTCTCTCGGAGTCAAGTGCAGTTCTAGACAT  150

seq1  TCTGCTGGTTTTCTGAAATGCTTTTTCACACAACTGGAACCTTTTCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGTTTTCTGAAATGCTTTTTCACACAACTGGAACCTTTTCCAAG  200

seq1  GAAGATCTTCAACGGGGTTGATCTTGTGTTAGTTTCCCTTCCAGAATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCTTCAACGGGGTTGATCTTGTGTTAGTTTCCCTTCCAGAATTGC  250

seq1  CAGACTGCTCCTGCAGCCCCAGAATTTGTTGTTATTTTTGTCCCCTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGCTCCTGCAGCCCCAGAATTTGTTGTTATTTTTGTCCCCTTAAA  300

seq1  AAGCTACAGGTCATCACAGAAGATATAACGGGGTCTTTGGGGGCACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAGGTCATCACAGAAGATATAACGGGGTCTTTGGGGGCACTGGG  350

seq1  GGCAGGCAGGCAGAAGCAAAAGTAAAGGTAAGACACTCAGGAAAGACCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGGCAGAAGCAAAAGTAAAGGTAAGACACTCAGGAAAGACCGG  400

seq1  AGCCGCTTTGTTTGTATTGTGTTTGATTTTGTGCTTAAGAGACTGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTTTGTTTGTATTGTGTTTGATTTTGTGCTTAAGAGACTGTTAAA  450

seq1  TTGAAGCAGGAAAGTGTGCCTGCTAAGTCTATTTGGCCTTCTTTTGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAGGAAAGTGTGCCTGCTAAGTCTATTTGGCCTTCTTTTGAGTC  500

seq1  CCTAAACTCTGTAAATAAATCTAGGTCTCCCAGAGGACTTTCCTTTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTCTGTAAATAAATCTAGGTCTCCCAGAGGACTTTCCTTTGCTA  550

seq1  AAGTGTGGGCTCCTGGTAAGCTATAATCCCCTTCCCCTGGCAGTGAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGGCTCCTGGTAAGCTATAATCCCCTTCCCCTGGCAGTGAGCCT  600

seq1  TCTACAGACTAAATTTAGAAAAATTAAATTACAACCCGGCACTGTGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGACTAAATTTAGAAAAATTAAATTACAACCCGGCACTGTGGCTC  650

seq1  CCGAAATGAAATGTATAGGACAGAATACCTGAAAACACCAGAGAGAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAATGAAATGTATAGGACAGAATACCTGAAAACACCAGAGAGAATGT  700

seq1  TGCTCAGACAGAAGAGTCGGGGCCTGGTGATCAATCTCACACGTCTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGACAGAAGAGTCGGGGCCTGGTGATCAATCTCACACGTCTACAC  750

seq1  AGAGAGGCAGAGGTCCTGATCGTTTAGAGAGAAAATGGAACCGCGCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAGAGGTCCTGATCGTTTAGAGAGAAAATGGAACCGCGCCAGC  800

seq1  CAATTTGGAACCATCAGAGCAATGATCGGGGAGAGGAGCCCCCGTCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGAACCATCAGAGCAATGATCGGGGAGAGGAGCCCCCGTCTAAT  850

seq1  TATGCCTCTGCGTTCCAACCAGGCATGAAAGAAATCACAGTCAACCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCTGCGTTCCAACCAGGCATGAAAGAAATCACAGTCAACCTGTG  900

seq1  ACTGAGAAAGGTGACTGCAGTGTGCCGCATCCGGGGTGGGGGGGGGG  947
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAAGGTGACTGCAGTGTGCCGCATCCGGGGTGGGGGGGGGG  947