BAC Information

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BAC

Clone NameB6Ng01-147K11
Chromosome5 (Build37)
Map Location 55,076,587 - 55,216,638
singlet/doubletdoublet
Overlap geneLOC666380
Upstream geneCckar, Tbc1d19, Stim2, EG666377
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147K11.bB6Ng01-147K11.g
ACCDH944476DH944477
length1,1531,133
definitionDH944476|Mus musculus domesticus DNA, BAC clone: B6Ng01-147K11, 5' end.DH944477|Mus musculus domesticus DNA, BAC clone: B6Ng01-147K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,076,587 - 55,077,765)(55,215,493 - 55,216,638)
sequence
gaattcacagtgacatttctgtgtcaggacttgactctgggcatagtttg
ctttgacatactagaaaccatccttgatgcgttcaaattgttgtaaaaat
tcttttcagtttatatgacaatggaaaacatactatatcatattactata
acagtaatgagaagacaagatcacatatttatttaggattttctctaata
tataatcttagtgttcaccactaagatttgcatctttaagcctttcattg
cacaagaattatgttaaaagatgagaatttaaacatttattgtacgttaa
tcattccttcaccgctactgcattaactgttcgtgtatattcaatcctat
cttaatgataccgcaaccatttgaaaatgaagggatcaagaactaatgtt
tcttacctagtctcattactagtaagtggtacagctgagatgttagaatt
ttgatttgtgaaattgtaattgcattgctgtatatgacaaggttatttcc
catctttgataacatcataattattgtgcctaagacatattcaatgaaat
taaaaagcatacattgaacattgaatttttaccataacataacttttcat
atgggatgaatgtaaaatataagttattaataagttttactcaaaatgaa
aattacatttctctaaatacgtgcaaagtgttcaaacatagaaggcaatc
gactgctctttcattgtcctatgagagaggaacatgggatgtttttaaat
ttttatttgaatttactttcacagcaaaattttcccaattgaagttaagg
tgcaaataagacataaaccattttctatcaccaataatatctttgtagcc
ctggctgtcctggaactcactctgtagactagactggcctcgactcacta
atttgaccgcctctgcctcccaagtgctggataaagggtgtgccatcatg
cccaacaatatctaaagctccgtgtcttcttactctctactcatatttct
cgattccctcatttaccgactcttagctcctaaatatatgcatatggaaa
tcacaggtaaaccttgccatgtatccataccatgtcgctatcaacaaagg
gcccgggccttgctacgctactgacgtttaaatgcctgaaatgggtgaca
tca
gaattcccatggatccaattccaatggatcagaagccttaaaccctgaaa
ttgtgtgaggaacaaagtagaaaaagcacttcaaaacacagagagaggca
cagattttctgaacaggaatttaattgctcaggaaaggggaaaaaaaccc
tgtttgcatctagggaatgctcttattttatttagatgaatcaagtactt
atgactatgagagaacttagaagtcatataatgtctaatttattttataa
atgaattaaggaaagatattatttaagctattagtgtttctccctactca
gattttgggtaatgtttagcataatgattttggtttctatcttttagttg
gtgaatagatccagaccagataatatcatttctgcatcagcaattaactc
ctcacaatgtcgtgaatagggtaacttatttattaagccttaaaaaatat
aattaggtcattctctctcattttcccaaatatatatatactaaacagaa
taaacaaaagcaatgagggcaaagatattgacaggagagacgatctactc
ctagaaaagccaaatctaggagtgaagccaagtttatgtaaagcatgatt
taacaactcacatgatgatgccaaaaatccacttttcttccttcatctct
ctgtgaagcacgtcttctgtcttactaatcccctagctgtgatgactgta
tcaattaatcacaacccttttaataaaccaccacaaaactaagtggcttt
aaaggcgatgattagttatttctcagaataatgtgggctggctaagattt
ctctcctatcctctttactgtgtagcgtgatgaagtattagagccaccac
atgctggaaaggacaatgtagcctgagtccctccccttgatatctgaagc
taactgttgtcttagcatcactgactacttcctatatgtatcatcctcca
gctgtccagaaaacttcccatcatattcttaaggcagatttccagagtct
gaaaagagagctgcaatatcaccctccagtggatgccagtgtcatttcta
attttcagtagcttaaaccaccctacaaacaagatccatcatcaatagta
atgtatacgacaattattaacaaagggttttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55076587_55077765
seq2: B6Ng01-147K11.b_43_1195

seq1  GAATTCACAGTGACATTTCTGTGTCAGGACTTGACTCTGGGCATAGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGACATTTCTGTGTCAGGACTTGACTCTGGGCATAGTTTG  50

seq1  CTTTGACATACTAGAAACCATCCTTGATGCGTTCAAATTGTTGTAGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  CTTTGACATACTAGAAACCATCCTTGATGCGTTCAAATTGTTGTAAAAAT  100

seq1  TCTTTTCAGTTTATATGACAATGGAAAACATACTATATCATATTACTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAGTTTATATGACAATGGAAAACATACTATATCATATTACTATA  150

seq1  ACAGTAATGAGAAGACAAGATCACATATTTATTTAGGATTTTCTCTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATGAGAAGACAAGATCACATATTTATTTAGGATTTTCTCTAATA  200

seq1  TATAATCTTAGTGTTCACCACTAAGATTTGCATCTTTAAGCCTTTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTTAGTGTTCACCACTAAGATTTGCATCTTTAAGCCTTTCATTG  250

seq1  CACAAGAATTATGTTAAAAGATGAGAATTTAAACATTTATTGTACGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAATTATGTTAAAAGATGAGAATTTAAACATTTATTGTACGTTAA  300

seq1  TCATTCCTTCACCGCTACTGCATTAACTGTTCGTGTATATTCAATCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTCACCGCTACTGCATTAACTGTTCGTGTATATTCAATCCTAT  350

seq1  CTTAATGATACCGCAACCATTTGAAAATGAAGGGATCAAGAACTAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGATACCGCAACCATTTGAAAATGAAGGGATCAAGAACTAATGTT  400

seq1  TCTTACCTAGTCTCATTACTAGTAAGTGGTACAGCTGAGATGTTAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTAGTCTCATTACTAGTAAGTGGTACAGCTGAGATGTTAGAATT  450

seq1  TTGATTTGTGAAATTGTAATTGCATTGCTGTATATGACAAGGTTATTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGTGAAATTGTAATTGCATTGCTGTATATGACAAGGTTATTTCC  500

seq1  CATCTTTGATAACATCATAATTATTGTGCCTAAGACATATTCAATGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGATAACATCATAATTATTGTGCCTAAGACATATTCAATGAAAT  550

seq1  TAAAAAGCATACATTGAACATTGAATTTTTACCATAACATAACTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCATACATTGAACATTGAATTTTTACCATAACATAACTTTTCAT  600

seq1  ATGGGATGAATGTAAAATATAAGTTATTAATAAGTTTTACTCAAAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGAATGTAAAATATAAGTTATTAATAAGTTTTACTCAAAATGAA  650

seq1  AATTACATTTCTCTAAATACTTGCAAAGTGTTCAAACATAGAAGGCAATC  700
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTACATTTCTCTAAATACGTGCAAAGTGTTCAAACATAGAAGGCAATC  700

seq1  GACTGCTCTTTCATTGTCATATGAGAGAGGAACATGGGATGTTTTTAAA-  749
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GACTGCTCTTTCATTGTCCTATGAGAGAGGAACATGGGATGTTTTTAAAT  750

seq1  TTTTATTTGAATTTACTTTAACACCAAAATTTTACCAAATTGAAGTTAAG  799
      ||||||||||||||||||| ||| ||||||||| || |||||||||||||
seq2  TTTTATTTGAATTTACTTTCACAGCAAAATTTT-CCCAATTGAAGTTAAG  799

seq1  GTGCAAATAAGACATAAACCATTTTCTATCACCAATAATATCTTTGTAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAATAAGACATAAACCATTTTCTATCACCAATAATATCTTTGTAGC  849

seq1  CCTGGCTGTCCTGGAACTCACTCTGTAGACTAGACTGGCCTCGAACTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  CCTGGCTGTCCTGGAACTCACTCTGTAGACTAGACTGGCCTCG-ACTCAC  898

seq1  TAATTTGTCCGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCA  949
      ||||||| ||||||||||||||||||||||||   |||||| ||||||||
seq2  TAATTTGACCGCCTCTGCCTCCCAAGTGCTGG--ATAAAGG-GTGTGCCA  945

seq1  TCATGCCCAATAAATATCTTAAGCTCTCTTTTTCTTCTTACTCTTCTCAC  999
      ||||||||||  ||||||| |||  |||  | ||||||||||| ||| ||
seq2  TCATGCCCAA-CAATATCTAAAG--CTCCGTGTCTTCTTACTC-TCT-AC  990

seq1  TTCATTTTTCTCGATTTCTCTCAATTTTTCCAACTCTTTAGCATCCTAAA  1049
       |||| |||||||| ||| ||||  ||| || |||| ||||| |||| ||
seq2  -TCATATTTCTCGA-TTCCCTCA--TTTACCGACTC-TTAGC-TCCT-AA  1033

seq1  ATATATAGCATAGTGAAAATCAAAGGTAAACACTTAGCAAGAGACCCAAA  1099
      |||||| ||||| || |||||| |||||||| ||| || |   | ||| |
seq2  ATATAT-GCATA-TGGAAATCACAGGTAAAC-CTT-GCCATGTATCCATA  1079

seq1  ACACTAGCCCAAAGCAAAGAAAGGGCCCGTGCCTTTCTTACTCTTCGGAC  1149
       || |  | | |    || |||||||||| ||||| | ||| || | |||
seq2  CCA-TGTCGCTA--TCAACAAAGGGCCCGGGCCTTGC-TACGCTACTGAC  1125

seq1  GTTTACAATGCCTGAGAATGGTTTACATCA  1179
      ||||| ||||||||| ||||| | ||||||
seq2  GTTTA-AATGCCTGA-AATGGGTGACATCA  1153

seq1: chr5_55215493_55216638
seq2: B6Ng01-147K11.g_70_1202 (reverse)

seq1  CCAAAACCCTTTTGTTGTTGTTGTTCGTTTTCTTTCTTTTTGTGTGTGTG  50
      ||||||||| ||||||  |  |  |||| | | ||  | |||    ||  
seq2  CCAAAACCC-TTTGTTAATAATTGTCGTATACATTACTATTGATGATGGA  49

seq1  TCTTTGTTTTTGTATGTGTGGTTTTAGCTACTGAAAATGTAAGAAATGAC  100
      |||   | |||||| | ||||||| ||||||||||||  | |||||||||
seq2  TCT---TGTTTGTA-GGGTGGTTTAAGCTACTGAAAA--TTAGAAATGAC  93

seq1  ACTGTGCAT-CACTGGAGGGTGAATATTTGCAGCTTCTCTTTTCAGACTC  149
      |||| |||| |||||||||||| ||| ||||||| |||||||||||||||
seq2  ACTG-GCATCCACTGGAGGGTG-ATA-TTGCAGC-TCTCTTTTCAGACTC  139

seq1  TTGGAATTCTGCCTTAAGAATATGATGGGAAAGTTTTTCTGGACAGCTGG  199
       ||||| ||||||||||||||||||||||||   ||||||||||||||||
seq2  -TGGAAATCTGCCTTAAGAATATGATGGGAA--GTTTTCTGGACAGCTGG  186

seq1  AGGATGATACATAATAAGAAAGTAGTCAGTGATGCTTAAGACAACAGTTA  249
      |||||||||||||   || |||||||||||||||| ||||||||||||||
seq2  AGGATGATACATA--TAGGAAGTAGTCAGTGATGC-TAAGACAACAGTTA  233

seq1  GCTTCAGATATCAGGTGGA-GGACTCAGGCTACCTTGTCCTTTCCAGC-T  297
      ||||||||||||| | ||| ||||||||||||| |||||||||||||| |
seq2  GCTTCAGATATCAAGGGGAGGGACTCAGGCTACATTGTCCTTTCCAGCAT  283

seq1  GTGGTGGCTCT-ATACTTCATCACGCTACACAGTAAATGAGGATAGGAGA  346
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  GTGGTGGCTCTAATACTTCATCACGCTACACAGTAAA-GAGGATAGGAGA  332

seq1  GAAATCTTAGCCAGCCCACATTATTCTGAGAAATAACTAATCATCGCCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTAGCCAGCCCACATTATTCTGAGAAATAACTAATCATCGCCTT  382

seq1  TAAAGCCACTTAGTTTTGTGGTGGTTTATT-AAAGGGTTGTGATTAATTG  445
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAAGCCACTTAGTTTTGTGGTGGTTTATTAAAAGGGTTGTGATTAATTG  432

seq1  ATACAGTCATCACAGCTAGGGGATTAGTAAGACAGAAGACGTGCTTCACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCATCACAGCTAGGGGATTAGTAAGACAGAAGACGTGCTTCACA  482

seq1  GAGAGATGAAGGAAGAAAAGTGGATTTTTGGCATCATCATGTGAGTTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGAAGGAAGAAAAGTGGATTTTTGGCATCATCATGTGAGTTGTT  532

seq1  AAATCATGCTTTACATAAACTTGGCTTCACTCCTAGATTTGGCTTTTCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGCTTTACATAAACTTGGCTTCACTCCTAGATTTGGCTTTTCTA  582

seq1  GGAGTAGATCGTCTCTCCTGTCAATATCTTTGCCCTCATTGCTTTTGTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGATCGTCTCTCCTGTCAATATCTTTGCCCTCATTGCTTTTGTTT  632

seq1  ATTCTGTTTAGTATATATATATTTGGGAAAATGAGAGAGAATGACCTAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTAGTATATATATATTTGGGAAAATGAGAGAGAATGACCTAAT  682

seq1  TATATTTTTTAAGGCTTAATAAATAAGTTACCCTATTCACGACATTGTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTTAAGGCTTAATAAATAAGTTACCCTATTCACGACATTGTGA  732

seq1  GGAGTTAATTGCTGATGCAGAAATGATATTATCTGGTCTGGATCTATTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAATTGCTGATGCAGAAATGATATTATCTGGTCTGGATCTATTCA  782

seq1  CCAACTAAAAGATAGAAACCAAAATCATTATGCTAAACATTACCCAAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAAAAGATAGAAACCAAAATCATTATGCTAAACATTACCCAAAAT  832

seq1  CTGAGTAGGGAGAAACACTAATAGCTTAAATAATATCTTTCCTTAATTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGGGAGAAACACTAATAGCTTAAATAATATCTTTCCTTAATTCA  882

seq1  TTTATAAAATAAATTAGACATTATATGACTTCTAAGTTCTCTCATAGTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAATAAATTAGACATTATATGACTTCTAAGTTCTCTCATAGTCA  932

seq1  TAAGTACTTGATTCATCTAAATAAAATAAGAGCATTCCCTAGATGCAAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTTGATTCATCTAAATAAAATAAGAGCATTCCCTAGATGCAAAC  982

seq1  AGGGTTTTTTTCCCCTTTCCTGAGCAATTAAATTCCTGTTCAGAAAATCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTTTTCCCCTTTCCTGAGCAATTAAATTCCTGTTCAGAAAATCT  1032

seq1  GTGCCTCTCTCTGTGTTTTGAAGTGCTTTTTCTACTTTGTTCCTCACACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTCTCTGTGTTTTGAAGTGCTTTTTCTACTTTGTTCCTCACACA  1082

seq1  ATTTCAGGGTTTAAGGCTTCTGATCCATTGGAATTGGATCCATTGGAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTTCAGGGTTTAAGGCTTCTGATCCATTGGAATTGGATCCATGGGAATT  1132

seq1  C  1146
      |
seq2  C  1133