BAC Information

Click to search

BAC

Clone NameB6Ng01-147L10
Chromosome5 (Build37)
Map Location 14,583,423 - 14,584,560
singlet/doubletsinglet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147L10.bB6Ng01-147L10.g
ACCDH944514DH944515
length1,139661
definitionDH944514|Mus musculus domesticus DNA, BAC clone: B6Ng01-147L10, 5' end.DH944515|Mus musculus domesticus DNA, BAC clone: B6Ng01-147L10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaactgctcggtgataatcacctaaaatggagtagccagtcac
taagtatctctcacagttttatgtttcctaggtactgctataattagatt
taaaattgtttatgatactaaatatttcatgtgatatattgctaggtgat
caattaggcagagacaaaaggcaagttttggtatgtaaataaaggctatc
aagtgatttttaaaataagaaatggtttgctttactcagatcacttttaa
tgaattcaaaatatattttcttatctataaacgttaaaagttagttaaaa
atgatgttaagtaattgtctttagagactctctaaaaccatatgcctctt
taaacctcagaatgcctttctaaacatagcagtttcttagacctttagga
atgcacacattccatgattattcctccttttgtgaaattaattcagttct
catatagcatgattgaagatttacgtctcaagctttgatgaaagatgttt
gtgttttcattaatgttatttccctctggctacaaaacaaaagcaaaaac
aagaacaaggacccaagcaataaatggaaaagaacaacaacaacaacaac
aacaaaacccagaaacttacacacttttaaatctgctgttaaccagaaag
tggaaattatctagagagcatatgatagctgaggtcggttctcaagttat
agaacgctatacatagcattctatacatataggaagctatacatgtagaa
taataaatggtagtcattcaactctcaatttcaggattttctagagcact
gctcatatatctaggatatatcatccttattaaaaccaaattgaaagtat
accactttaaagctctcttaaatgttgctatatatgcactatatgaaagg
actttaaactttcaatattctttctactacacaaaagcagagctgcactc
tacaagtgaaagcctttttatagaagctgatttgtctcacataacaagtg
gctgccactctatctccctgaagaagtctcactttgtcttcagacttact
gtcttagtctcaagctgctactgctttggtgatatccctgtgtatctcag
ccatgtaactaaatgggccaaagtaaagaagaaatggct
gaattctgttcatgtggctatattcttttaggtttgttgaaagattactt
tcttgctttttctagggtgtagtttccctccttgtgttggatttttccct
ttattttcctttgaagggctagatttgtggaaagatattgtgtaaatttg
gttttgtcatggaataccttggttttgcagctttggtaattgagagtttt
gttgggtatagtagcctgggctggcatttgttctattagggtttatatga
tgtatgcccacaatcttctggctttcacagtctctagcgagaagtctatt
gaaactctgataggtcttctttatatgttattggctttttcccttactgc
ttttaatattctttctttgttttgtgcatttgatgttttgattattatgt
gatgggaggaatttcttttctggaaatgatttggagttctgtaggcttct
tgtatgttcatgggcatctctttctttaggttagggaagttttattctat
aattttgttgaagatatttactggccccttaagttggaaatctttatctt
ctatacctattatacttagatttgattttctcattgtgtcctggatttcc
tgggatgttttgggttagggaggtttttgcactttgcatttttctttgtt
aatgttttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14583423_14584560
seq2: B6Ng01-147L10.b_46_1184 (reverse)

seq1  AGCCCTTTCTTCTTT-CCTTGGCCCATTTTAGTTACATGGCCTGAGATAC  49
      |||| |||||||||| | |||||||| ||||||||||||| |||||||||
seq2  AGCCATTTCTTCTTTACTTTGGCCCA-TTTAGTTACATGG-CTGAGATAC  48

seq1  ACAAGGGATATCACCAAAGCAGTAGCAGCCTGAGACT-AGACAGTAAGTC  98
      || |||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AC-AGGGATATCACCAAAGCAGTAGCAGCTTGAGACTAAGACAGTAAGTC  97

seq1  TGAAGACATAGTGAGAC-TCTTCAGGGAGATAGAGTGGCAGCCACTTGTT  147
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  TGAAGACAAAGTGAGACTTCTTCAGGGAGATAGAGTGGCAGCCACTTGTT  147

seq1  ATGTGAGACAAATCAGCTTCTATAAAAAGGCTTTCACTTGTAGAGTGCAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGACAAATCAGCTTCTATAAAAAGGCTTTCACTTGTAGAGTGCAG  197

seq1  CTCTGCTTTTGTGTAAGTAG-AAGAATATTGAAAGTTTAAAGT-CTTTCA  245
      |||||||||||||| ||||| |||||||||||||||||||||| ||||||
seq2  CTCTGCTTTTGTGT-AGTAGAAAGAATATTGAAAGTTTAAAGTCCTTTCA  246

seq1  TATAGTGCATATATAGCAACATTTAAGAGAGCTTTAAAGTGGTATACTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGCATATATAGCAACATTTAAGAGAGCTTTAAAGTGGTATACTTT  296

seq1  CAATTTGGTTTTAATAAGGATGATATATCCTAGATATATGAGCAGTGCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGTTTTAATAAGGATGATATATCCTAGATATATGAGCAGTGCTC  346

seq1  TAGAAAATCCTGAAATTGAGAGTTGAATGACTACCATTTATTATTCTACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATCCTGAAATTGAGAGTTGAATGACTACCATTTATTATTCTACA  396

seq1  TGTATAGCTTCCTATATGTATAGAATGCTATGTATAGCGTTCTATAACTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCTTCCTATATGTATAGAATGCTATGTATAGCGTTCTATAACTT  446

seq1  GAGAACCGACCTCAGCTATCATATGCTCTCTAGATAATTTCCACTTTCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCGACCTCAGCTATCATATGCTCTCTAGATAATTTCCACTTTCTG  496

seq1  GTTAACAGCAGATTTAAAAGTGTGTAAGTTTCTGGGTTTTGTTGTTGTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAGCAGATTTAAAAGTGTGTAAGTTTCTGGGTTTTGTTGTTGTTG  546

seq1  TTGTTGTTGTTCTTTTCCATTTATTGCTTGGGTCCTTGTTCTTGTTTTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTCTTTTCCATTTATTGCTTGGGTCCTTGTTCTTGTTTTTG  596

seq1  CTTTTGTTTTGTAGCCAGAGGGAAATAACATTAATGAAAACACAAACATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTTGTAGCCAGAGGGAAATAACATTAATGAAAACACAAACATC  646

seq1  TTTCATCAAAGCTTGAGACGTAAATCTTCAATCATGCTATATGAGAACTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAAAGCTTGAGACGTAAATCTTCAATCATGCTATATGAGAACTG  696

seq1  AATTAATTTCACAAAAGGAGGAATAATCATGGAATGTGTGCATTCCTAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTCACAAAAGGAGGAATAATCATGGAATGTGTGCATTCCTAAA  746

seq1  GGTCTAAGAAACTGCTATGTTTAGAAAGGCATTCTGAGGTTTAAAGAGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAGAAACTGCTATGTTTAGAAAGGCATTCTGAGGTTTAAAGAGGC  796

seq1  ATATGGTTTTAGAGAGTCTCTAAAGACAATTACTTAACATCATTTTTAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTTAGAGAGTCTCTAAAGACAATTACTTAACATCATTTTTAAC  846

seq1  TAACTTTTAACGTTTATAGATAAGAAAATATATTTTGAATTCATTAAAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTAACGTTTATAGATAAGAAAATATATTTTGAATTCATTAAAAG  896

seq1  TGATCTGAGTAAAGCAAACCATTTCTTATTTTAAAAATCACTTGATAGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGAGTAAAGCAAACCATTTCTTATTTTAAAAATCACTTGATAGCC  946

seq1  TTTATTTACATACCAAAACTTGCCTTTTGTCTCTGCCTAATTGATCACCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACATACCAAAACTTGCCTTTTGTCTCTGCCTAATTGATCACCT  996

seq1  AGCAATATATCACATGAAATATTTAGTATCATAAACAATTTTAAATCTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATATCACATGAAATATTTAGTATCATAAACAATTTTAAATCTAA  1046

seq1  TTATAGCAGTACCTAGGAAACATAAAACTGTGAGAGATACTTAGTGACTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCAGTACCTAGGAAACATAAAACTGTGAGAGATACTTAGTGACTG  1096

seq1  GCTACTCCATTTTAGGTGATTATCACCGAGCAGTTTTGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCCATTTTAGGTGATTATCACCGAGCAGTTTTGAATTC  1139