BAC Information

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BAC

Clone NameB6Ng01-147L13
Chromosome5 (Build37)
Map Location 82,011,723 - 82,112,070
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147L13.bB6Ng01-147L13.g
ACCDH944520DH944521
length7491,130
definitionDH944520|Mus musculus domesticus DNA, BAC clone: B6Ng01-147L13, 5' end.DH944521|Mus musculus domesticus DNA, BAC clone: B6Ng01-147L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,011,723 - 82,012,470)(82,110,916 - 82,112,070)
sequence
gaattcagtcagaaaggcaccatgtcttattcaagatccctgctagagag
atattcagttcctgtcaaggcttccaattgaagttactctctgtggagat
cttttcaggcatttcaaaactactatccaataaggaccccagtgctggag
caataaaaccaaatccttggcaaagggaatctcaaaggctgtttcactgt
aaatgaaattattgtccagccctattatggagaaaccaaatgttacaaaa
gaggaaaatattaaccaagtgataacaaaaatgaatgttaccgcaataaa
tctctgttagattccaagactacgttacgattatcttgtgtatgtgaaag
gctagagctgtcaaagaggttacaaaatttctgacctggctgtcctccat
ctggtagagcctgcgctctgccactctttggggaagcaaggtggcacaag
accattaaccttcttgccagagctttgaaaagaaactgcatttggaaaag
gagagatgaggggaaagatgttcaatgaagaataaaatgtttaattctaa
tgtcctagaaaatggaaagcggggaagctgggaagaaacacaagtaccag
tctgtaattagcgtggccacagctgcctttaagcctttctccgtctctat
cctggtggtcacagttacatagagtctctaacaagaaagaactctgtaac
ttgagagactggaggagttggggaggcatcctggggatggggggggggg
gaattcactggcttttctgcctccccttgaaagcctcaaaagccaacaac
agaaggcaagtacttgtgagaagacgaatacattagaactcttggaattt
tctaaaataagcttttaaatcatgagttccatcaggttttagctcaggtt
tcacttactaaaagttattctatttttgttccacaagtgaacctgttctg
ttttctttacatcatgtatcattccctaaaagtgtctcatatattcattt
acatctatggttattttattcctcccactggagaaaaaggaatctttaca
aggattgctctaggaatcacttataagggccaaaaataatgttaagtgaa
catcttctgagtgcagggtatacagtggaagttcataatttagtcaaatt
tccatttcatatgtgtgggggcaaacaaaatctctgaaggcatgggattt
ctgaatcaaagagcaatagacatatttcatgagtccttattccagacatt
caataatacaatggcatctcactgtgttttggctgccataatagagtacc
ttaaccagattgtttatgaattaaaaacttattatttatagttcctgtca
ttgtgaagtagataacaaaggcacttgcagacgcagtgtcaagggaagcc
cctgtttatccttacatgtggatgagagaaacaaattctgcagtccttca
taaggcactgaggccgttcttgaaggttcctcagcctcaacttaatttta
ttccagatactccccttcctgacaccactacagttggcacagaatttcaa
gatgtgagtgaggagaagatggaaaaatgcacattatagcagacttccat
ttaaagcttattcgtgtttacccaagttctctgtgtttttatcttccttt
cccactagactacgtgctttagagaagatatgctttctcagatatagtag
tcatcgtcgtcataggctagcataactacttttttaggaaatactatgac
attagaacatgaagaacactaaggagcatcctttttattttatagtgttt
gatatgtcttctgggaggagaagagcatacccccatggttttgaaggaat
acctaatggaggattaaagagaattggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82011723_82012470
seq2: B6Ng01-147L13.b_45_792

seq1  GAATTCAGTCAGAAAGGCACCATGTCTTATTCAAGATCCCTGCTAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGAAAGGCACCATGTCTTATTCAAGATCCCTGCTAGAGAG  50

seq1  ATATTCAGTTCCTGTCAAGGCTTCCAATTGAAGTTACTCTCTGTGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGTTCCTGTCAAGGCTTCCAATTGAAGTTACTCTCTGTGGAGAT  100

seq1  CTTTTCAGGCATTTCAAAACTACTATCCAATAAGGACCCCAGTGCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGGCATTTCAAAACTACTATCCAATAAGGACCCCAGTGCTGGAG  150

seq1  CAATAAAACCAAATCCTTGGCAAAGGGAATCTCAAAGGCTGTTTCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAACCAAATCCTTGGCAAAGGGAATCTCAAAGGCTGTTTCACTGT  200

seq1  AAATGAAATTATTGTCCAGCCCTATTATGGAGAAACCAAATGTTACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATTATTGTCCAGCCCTATTATGGAGAAACCAAATGTTACAAAA  250

seq1  GAGGAAAATATTAACCAAGTGATAACAAAAATGAATGTTACCGCAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATATTAACCAAGTGATAACAAAAATGAATGTTACCGCAATAAA  300

seq1  TCTCTGTTAGATTCCAAGACTACGTTACGATTATCTTGTGTATGTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTAGATTCCAAGACTACGTTACGATTATCTTGTGTATGTGAAAG  350

seq1  GCTAGAGCTGTCAAAGAGGTTACAAAATTTCTGACCTGGCTGTCCTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCTGTCAAAGAGGTTACAAAATTTCTGACCTGGCTGTCCTCCAT  400

seq1  CTGGTAGAGCCTGCGCTCTGCCACTCTTTGGGGAAGCAAGGTGGCACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGAGCCTGCGCTCTGCCACTCTTTGGGGAAGCAAGGTGGCACAAG  450

seq1  ACCATTAACCTTCTTGCCAGAGCTTTGAAAAGAAACTGCATTTGGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAACCTTCTTGCCAGAGCTTTGAAAAGAAACTGCATTTGGAAAAG  500

seq1  GAGAGATGAGGGGAAAGATGTTCAATGAAGAATAAAATGTTTAATTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGAGGGGAAAGATGTTCAATGAAGAATAAAATGTTTAATTCTAA  550

seq1  TGTCCTAGAAAATGGAAAGCGGGGAAGCTGGGAAGAAACACAAGTACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGAAAATGGAAAGCGGGGAAGCTGGGAAGAAACACAAGTACCAG  600

seq1  TCTGTAATTAGCGTGGCCACAGCTGCCTTTAAGCCTTTCTCCGTCTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTAGCGTGGCCACAGCTGCCTTTAAGCCTTTCTCCGTCTCTAT  650

seq1  CCTGGTGGTCACAGTTACATAGAGTCTCTAACAAGAAAGAACTCTGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGTCACAGTTACATAGAGTCTCTAACAAGAAAGAACTCTGTAAC  700

seq1  TTGAGAGACTGGAGGAGTTGGGGAGGCATCCTGGGGATGGGGGGGGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGACTGGAGGAGTTGGGGAGGCATCCTGGGGATGGGGGGGGGG  748

seq1: chr5_82110916_82112070
seq2: B6Ng01-147L13.g_68_1197 (reverse)

seq1  ATTCCAATTCTCTCTTTAATTCCCTCCAACTCACTGTATTTTCCTTCAAA  50
      ||||||||  ||||||||||  ||||||  | |  |||  ||||||||||
seq2  ATTCCAAT--TCTCTTTAAT--CCTCCA--TTA-GGTA--TTCCTTCAAA  41

seq1  ACCATGGGGGGTATTTGCCTCTTTCTTCTCCCAGAAGACATATCAAAACA  100
      ||||| ||||||||    ||| |||| ||||||||||||||||| |||||
seq2  ACCAT-GGGGGTAT---GCTC-TTCTCCTCCCAGAAGACATATC-AAACA  85

seq1  CTATAAAAATAAAAAAGGATGCT-CTTAGTGTTCTCATTGTTTCTTATTG  149
      ||||||||   |||||||||||| |||||||||||   ||||   || ||
seq2  CTATAAAA--TAAAAAGGATGCTCCTTAGTGTTCTTCATGTT--CTAATG  131

seq1  TCATAGGTTATTTCCTAATAAAAGTAAGTTATGCTAGCCTAATGACGACG  199
      ||||||  |||||||||| |||||| |||||||||||||| |||||||||
seq2  TCATAG--TATTTCCTAA-AAAAGT-AGTTATGCTAGCCT-ATGACGACG  176

seq1  ATGACTACTATATTCTGAGAAAGCATATCTTCTCTAAAGCACGTAGTCTA  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGACTACTATA-TCTGAGAAAGCATATCTTCTCTAAAGCACGTAGTCTA  225

seq1  GTGGGAAAGGAAGATAAAAACACAGAGAACTTGGGTAAACACGAATAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAGGAAGATAAAAACACAGAGAACTTGGGTAAACACGAATAAGC  275

seq1  TTTAAATGGAAGTCTGCTATAATGTGCATTTTTTCCATCTTCTCCTCACT  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTAAATGGAAGTCTGCTATAATGTGCA-TTTTTCCATCTTCTCCTCACT  324

seq1  CACATCTTGAAATTCTGTGCCAACTGTAGTGGTGTCAGGAAGGGGAGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTGAAATTCTGTGCCAACTGTAGTGGTGTCAGGAAGGGGAGTAT  374

seq1  CTGGAATAAAATTAAGTTGAGGCTGAGGAACCTTCAAGAACGGCCTCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATAAAATTAAGTTGAGGCTGAGGAACCTTCAAGAACGGCCTCAGT  424

seq1  GCCTTATGAAGGACTGCAGAATTTGTTTCTCTCATCCACATGTAAGGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATGAAGGACTGCAGAATTTGTTTCTCTCATCCACATGTAAGGATA  474

seq1  AACAGGGGCTTCCCTTGACACTGCGTCTGCAAGTGCCTTTGTTATCTACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGCTTCCCTTGACACTGCGTCTGCAAGTGCCTTTGTTATCTACT  524

seq1  TCACAATGACAGGAACTATAAATAATAAGTTTTTAATTCATAAACAATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGACAGGAACTATAAATAATAAGTTTTTAATTCATAAACAATCT  574

seq1  GGTTAAGGTACTCTATTATGGCAGCCAAAACACAGTGAGATGCCATTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGTACTCTATTATGGCAGCCAAAACACAGTGAGATGCCATTGTA  624

seq1  TTATTGAATGTCTGGAATAAGGACTCATGAAATATGTCTATTGCTCTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAATGTCTGGAATAAGGACTCATGAAATATGTCTATTGCTCTTTG  674

seq1  ATTCAGAAATCCCATGCCTTCAGAGATTTTGTTTGCCCCCACACATATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAATCCCATGCCTTCAGAGATTTTGTTTGCCCCCACACATATGA  724

seq1  AATGGAAATTTGACTAAATTATGAACTTCCACTGTATACCCTGCACTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATTTGACTAAATTATGAACTTCCACTGTATACCCTGCACTCAG  774

seq1  AAGATGTTCACTTAACATTATTTTTGGCCCTTATAAGTGATTCCTAGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTCACTTAACATTATTTTTGGCCCTTATAAGTGATTCCTAGAGC  824

seq1  AATCCTTGTAAAGATTCCTTTTTCTCCAGTGGGAGGAATAAAATAACCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTGTAAAGATTCCTTTTTCTCCAGTGGGAGGAATAAAATAACCAT  874

seq1  AGATGTAAATGAATATATGAGACACTTTTAGGGAATGATACATGATGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAATGAATATATGAGACACTTTTAGGGAATGATACATGATGTAA  924

seq1  AGAAAACAGAACAGGTTCACTTGTGGAACAAAAATAGAATAACTTTTAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGAACAGGTTCACTTGTGGAACAAAAATAGAATAACTTTTAGT  974

seq1  AAGTGAAACCTGAGCTAAAACCTGATGGAACTCATGATTTAAAAGCTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAACCTGAGCTAAAACCTGATGGAACTCATGATTTAAAAGCTTAT  1024

seq1  TTTAGAAAATTCCAAGAGTTCTAATGTATTCGTCTTCTCACAAGTACTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAATTCCAAGAGTTCTAATGTATTCGTCTTCTCACAAGTACTTG  1074

seq1  CCTTCTGTTGTTGGCTTTTGAGGCTTTCAAGGGGAGGCAGAAAAGCCAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTGTTGGCTTTTGAGGCTTTCAAGGGGAGGCAGAAAAGCCAGT  1124

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1130