BAC Information

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BAC

Clone NameB6Ng01-147O21
Chromosome5 (Build37)
Map Location 16,869,983 - 17,025,236
singlet/doubletdoublet
Overlap geneLOC100041749, LOC100041832, Speer4f, EG630927
Upstream geneCacna2d1, LOC668121, Hgf, EG668131, LOC626390, LOC668142
Downstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147O21.bB6Ng01-147O21.g
ACCDH944674DH944675
length9711,108
definitionDH944674|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O21, 5' end.DH944675|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,869,983 - 16,870,951)(17,024,108 - 17,025,236)
sequence
gaattcaaatatgcttcagaattcaatatacaaaatcaaaatttatccat
atcaataatatgttatttaaaatgaaatattctgttatttgtgtatatgt
gcctattttcaaaaacattacaatattacaagtttctcaagctacatatt
aaaagtctgagacaattctagtgtgtcctccttccaaagggaaggatgag
agggattggtagatacatgtaattggttcataggtattaagataaataaa
aattagcttacaaattatttatccttatcacctacccttgctttgtattt
tgaaaaatgtaataatagtcctgataactcattcattctagaagctttta
atctctaggatctttatttttaatttttattgagatcttaggtcattttg
aacattgagtatgttttaataaccttgtctaatggaaataaacaacatat
attaaattacacaattttattttttttaattttttttttttaggtattta
acacatttacatttccaatgctataccaaaagtcccccatatccacccac
ccccactcccctgcccacccactccccctttttggccctggtgttcccct
gtactggggcatataaagtttgcaagtccaatgggcctctctttccagtg
atggccgactaggccatcttttgatatatatgcagctagagtcaagagct
ccggggtactggttagttcataatgttgttccacctatagggttgcagat
ccctttagctcctttggctactttctctagctcctccattgggagcccta
tgatccatccattagctgactgtgagcatccacttctgtgtttgctaggc
cccggcatagtctcacaagagacagctacatctgggtcctttcaataaaa
tcttgctagtgtatgcaatggtgtcagcgttggatgctgattatgggtgg
atccctggatatggcagtctc
gaattcactaagaaacagatgaaatccacagtgaattagtaaacttgtct
tgtttgacaccaagactatcaagtgtatcagctgaaaaaaatcaggggct
ttaggatatctaaaggtcagcagatagatgtttctattaaagtcccttca
gaattacaaaacaaataatagctaaatgacagtgtacatgtaatactgtt
ctgtttattattgtggataaatgtcaatttcttatgccaattttctatat
attttatgtatgtttaattgtatcagctgggtgtgatggtatacacctaa
aggtgtactcccaacacttgggaggcagaggcaggtgaagttctgagttc
gaggccagactggtctacaaagtgagttccagaacagccagggctacaca
gagaaaccctgtctcaaaaaacaaaaacaaacaatcaaacaaaacaaaac
aaaaacaaaaacaaaaaaccaaaaaaaaaaaaaacaaaaaaacccaaaaa
cattgtatcaattgcctcattattttgtatataaaatccttcagaatttt
ggtaccctctcacagtcataagaaaacacttattaattgcgtcaaaattg
ctgattagtgagaggcttaatgagagagtgagatctccagagctgacatg
aggctgaaagaaagagttgtttaaggagagtggcaggaggttctttaacc
tctttataagttaacaaataagtctattttcctcaaattctgcagttgct
ctttaaaagcacagtggttggatagcaagctgactttttatgagctctgt
acaaataattgtgaacttttaatatgctgagggctttcattttgataact
ggatctccatttgatatttcatttctataattcatttgcagtctgaattt
tttttagtaccagtccctgacctatcatgaaagttggttttctttgcatt
ttcaatatctagatcatgaagaaaagtatcatacaaattaaattgaattt
aagagatagattggtgcatggatgggggctctgtagctgatttttgtgag
agaggaatgctctgaccattaggatagagaagaaccatcatcaactcttc
tggatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16869983_16870951
seq2: B6Ng01-147O21.b_47_1013

seq1  GAATTCAAATATGCTTCAGAATTCAATATACAAAATCAAAATTTATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATGCTTCAGAATTCAATATACAAAATCAAAATTTATCCAT  50

seq1  ATCAATAATATGTTATTTAAAATGAAATATTCTGTTATTTGTGTATATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAATATGTTATTTAAAATGAAATATTCTGTTATTTGTGTATATGT  100

seq1  GCCTATTTTCAAAAACATTACAATATTACAAGTTTCTCAAGCTACATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTTCAAAAACATTACAATATTACAAGTTTCTCAAGCTACATATT  150

seq1  AAAAGTCTGAGACAATTCTAGTGTGTCCTCCTTCCAAAGGGAAGGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTGAGACAATTCTAGTGTGTCCTCCTTCCAAAGGGAAGGATGAG  200

seq1  AGGGATTGGTAGATACATGTAATTGGTTCATAGGTATTAAGATAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGGTAGATACATGTAATTGGTTCATAGGTATTAAGATAAATAAA  250

seq1  AATTAGCTTACAAATTATTTATCCTTATCACCTACCCTTGCTTTGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTTACAAATTATTTATCCTTATCACCTACCCTTGCTTTGTATTT  300

seq1  TGAAAAATGTAATAATAGTCCTGATAACTCATTCATTCTAGAAGCTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGTAATAATAGTCCTGATAACTCATTCATTCTAGAAGCTTTTA  350

seq1  ATCTCTAGGATCTTTATTTTTAATTTTTATTGAGATCTTAGGTCATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAGGATCTTTATTTTTAATTTTTATTGAGATCTTAGGTCATTTTG  400

seq1  AACATTGAGTATGTTTTAATAACCTTGTCTAATGGAAATAAACAACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAGTATGTTTTAATAACCTTGTCTAATGGAAATAAACAACATAT  450

seq1  ATTAAATTACACAATTTTATTTTTTTTAATTTTTTTTTTTTTAGGTATTT  500
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTAAATTACACAATTTTATTTTTTTTAA-TTTTTTTTTTTTAGGTATTT  499

seq1  AACACATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCA  549

seq1  CCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCC  599

seq1  TGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGT  649

seq1  GATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGC  699

seq1  TCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA  749

seq1  TCCCTTTAGCTCC-TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCT  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAGCTCCTTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCT  799

seq1  ATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  849

seq1  CCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAATAAA  899

seq1  ATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGG  949
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  ATCTTGCTAGTGTATGCAATGGTGTCAGCG-TTGGATGCTGATTAT-GGG  947

seq1  TGGATCCCTGGATATGGCAG  969
      ||||||||||||||||||||
seq2  TGGATCCCTGGATATGGCAG  967

seq1: chr5_17024108_17025236
seq2: B6Ng01-147O21.g_68_1175 (reverse)

seq1  AGTATTCAGAAGAGTTTGGTGATGG-TCTTCTGCTATCCTAATAGTCAGA  49
      ||||| |||||||| ||| |||||| |||||| |||||||||| ||||||
seq2  AGTATCCAGAAGAG-TTGATGATGGTTCTTCT-CTATCCTAATGGTCAGA  48

seq1  GACATCCCTCTTCTCACAAAATTTTGCTTACAGGAGCCCCCATTCCATGC  99
      | ||| |||| |||||||||| |  || |||| ||||||||| |||||||
seq2  G-CATTCCTC-TCTCACAAAAATCAGC-TACA-GAGCCCCCA-TCCATGC  93

seq1  ACCAATTTCTTTTTTTTCTTCTTTTAATTCAATTTTAATTTGTTATGATT  149
      |||||| | | |          || ||||||| ||||||||| ||||| |
seq2  ACCAATCTATCT---------CTTAAATTCAA-TTTAATTTG-TATGA-T  131

seq1  ACTTTTCTTCATGATCTAGATATTTGAAAATGCAAAGAAAACCAACTTTT  199
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  ACTTTTCTTCATGATCTAGATA-TTGAAAATGCAAAGAAAACCAAC-TTT  179

seq1  CATGATAGGTCAGGGACTGGTACTAAAAAAAATTCAGACTGCAAATGAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGGTCAGGGACTGGTACTAAAAAAAATTCAGACTGCAAATGAAT  229

seq1  TATAGAAATGAAATATCAAATGGAGATCCAGTTATCAAAATGAAAGCCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAATGAAATATCAAATGGAGATCCAGTTATCAAAATGAAAGCCCT  279

seq1  CAGCATATTAAAAGTTCACAATTATTTGTACAGAGCTCATAAAAAGTCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATTAAAAGTTCACAATTATTTGTACAGAGCTCATAAAAAGTCAG  329

seq1  CTTGCTATCCAACCACTGTGCTTTTAAAGAGCAACTGCAGAATTTGAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATCCAACCACTGTGCTTTTAAAGAGCAACTGCAGAATTTGAGGA  379

seq1  AAATAGACTTATTTGTTAACTTATAAAGAGGTTAAAGAACCTCCTGCCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACTTATTTGTTAACTTATAAAGAGGTTAAAGAACCTCCTGCCAC  429

seq1  TCTCCTTAAACAACTCTTTTCTTTCAGCCTCATGTCAGCTCTGGAGATCT  499
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTCCTTAAACAACTC-TTTCTTTCAGCCTCATGTCAGCTCTGGAGATCT  478

seq1  CACTCTCTCATTAAGCCTCTCACTAATCAGCAATTTTGACGCAATTAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCATTAAGCCTCTCACTAATCAGCAATTTTGACGCAATTAATA  528

seq1  AGTGTTTTCTTATGACTGTGAGAGGGTACCAAAATTCTGAAGGATTTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCTTATGACTGTGAGAGGGTACCAAAATTCTGAAGGATTTTAT  578

seq1  ATACAAAATAATGAGGCAATTGATACAATGTTTTTGGGTTTTTTTGTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATAATGAGGCAATTGATACAATGTTTTTGGGTTTTTTTGTTTT  628

seq1  TTTTTTTTTTGGTTTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTGATTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGTTTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTGATTGT  678

seq1  TTGTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCT  728

seq1  GGAACTCACTTTGTAGACCAGTCTGGCCTCGAACTCAGAACTTCACCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTTTGTAGACCAGTCTGGCCTCGAACTCAGAACTTCACCTGC  778

seq1  CTCTGCCTCCCAAGTGTTGGGAGTACACCTTTAGGTGTATACCATCACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGTTGGGAGTACACCTTTAGGTGTATACCATCACAC  828

seq1  CCAGCTGATACAATTAAACATACATAAAATATATAGAAAATTGGCATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGATACAATTAAACATACATAAAATATATAGAAAATTGGCATAAG  878

seq1  AAATTGACATTTATCCACAATAATAAACAGAACAGTATTACATGTACACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACATTTATCCACAATAATAAACAGAACAGTATTACATGTACACT  928

seq1  GTCATTTAGCTATTATTTGTTTTGTAATTCTGAAGGGACTTTAATAGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAGCTATTATTTGTTTTGTAATTCTGAAGGGACTTTAATAGAAA  978

seq1  CATCTATCTGCTGACCTTTAGATATCCTAAAGCCCCTGATTTTTTTCAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCTGCTGACCTTTAGATATCCTAAAGCCCCTGATTTTTTTCAGC  1028

seq1  TGATACACTTGATAGTCTTGGTGTCAAACAAGACAAGTTTACTAATTCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACTTGATAGTCTTGGTGTCAAACAAGACAAGTTTACTAATTCAC  1078

seq1  TGTGGATTTCATCTGTTTCTTAGTGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  TGTGGATTTCATCTGTTTCTTAGTGAATTC  1108