BAC Information

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BAC

Clone NameB6Ng01-148H22
Chromosome5 (Build37)
Map Location 87,791,052 - 87,895,877
singlet/doubletdoublet
Overlap geneLOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1
Upstream geneTmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3
Downstream geneSult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148H22.bB6Ng01-148H22.g
ACCDH945088DH945089
length8651,088
definitionDH945088|Mus musculus domesticus DNA, BAC clone: B6Ng01-148H22, 5' end.DH945089|Mus musculus domesticus DNA, BAC clone: B6Ng01-148H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,791,052 - 87,791,919)(87,894,773 - 87,895,877)
sequence
gaattctattagaccttcaaaaaagacttaattccaatactctacaaact
atttcacaagaaagaaacagatggaacactacccaattcattctatgaag
ccatagttatcctaagtgttatccctaggagacaaaacagtttctggcta
attaggaacttggcacagttccctttcatagaggtcttcagaagagattt
ttttctacttctatcatgcttaatgttccaaatagatattaaaaactggt
tgagtgcctattacttttagctccagaagattcatgtatatttaagaagt
atttaactattataaattattttgatgtctaaaaaataataataatataa
aaataatacacttgtctttttcactattagtttattcacattgggtatcc
gtatcactattaaaatatataatatccaggaaaaggcattacatacaact
agtttccgacaatgtactcctacttaaaatagtttctgttcaaaagtgtt
taatgaggaagtgaggtggctcagtaggtaaaggtgtttgccacccagct
taaggatatgaattcattcctgaggacttacctggcagagggtaagacag
atcctcaacttaaattacagcctccacctgcactctatggcatacagaga
cggggtagggagggagaagagagaagggggatgtttagtaatatagggaa
cacagaggacttaagtatttaaaaacaacatctcaaatggtaagatttgc
aagtctagtcattattctgtaatgcagaagtatagttttttttttattta
caatgacattcgcaaacattaaatgattggtatggcttactttgaaagat
ttagcacctacatgt
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatccgatttgggataggtaaagatcctttcccaatctgttggtggtctt
attgatggtgtcttttgccttgcagaagctttgcaactttatgaggtccc
atagctttttattgaattcttggaataaaatctcaaggcttcttggtgta
ggacaaacatgttaacaatccaagatccatatatgaatgctttaacatag
aattcaataactgttgtaaataaatatttcttaactctaaaatctatgaa
tataaaatttatctactgaacttctctaaagcctggaagaagcacacgta
atgtaaagcaagtaagggatataaacattttggtggtgagatttgagata
gattaaatgcactgcctggaaactccgagctcagtatcctcaggtagtga
acctaactatctcattaggctctgtgacttcatgcacatgccaaaactac
taaacgatggcctttagaaatagtatctgccagcctgcacaaaatcaaca
ggtttccttaaaaagattctcattgacagttttttttcttacctaaagca
cgtttttcggtgaataattgtctaatattaatatataaacatagtcatct
tctctagatagctcttgaaagtatcattcaatatttttcttgttccagtg
ttcttcttaatggtaagtgtaaagtcgtgtattgggttatccttgcattt
gtatctcacatcccagagtttattgtattctgaaaattaatcagggctcc
ccccaacatgaaataatgatgaatcatttccatatgggaatcctcaacat
aatttaaaccaagtataacagactgcataggagaatttgttcctagcaga
ggactggagggcagtgatgatggaatacgatttacagatagaggcatcta
tctcctgcttttactagaggagaaattgtggatcatcagtcattgtagct
accataaacttattgtatttttagacagggcatagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87791052_87791919
seq2: B6Ng01-148H22.b_49_913

seq1  GAATTCTATTAGACCTTCAAAAAAGACTTAATTCCAATACTCTACAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAGACCTTCAAAAAAGACTTAATTCCAATACTCTACAAACT  50

seq1  ATTTCACAAGAAAGAAACAGATGGAACACTACCCAATTCATTCTATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAAGAAAGAAACAGATGGAACACTACCCAATTCATTCTATGAAG  100

seq1  CCATAGTTATCCTAAGTGTTATCCCTAGGAGACAAAACAGTTTCTGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTATCCTAAGTGTTATCCCTAGGAGACAAAACAGTTTCTGGCTA  150

seq1  ATTAGGAACTTGGCACAGTTCCCTTTCATAGAGGTCTTCAGAAGAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAACTTGGCACAGTTCCCTTTCATAGAGGTCTTCAGAAGAGATTT  200

seq1  TTTTCTACTTCTATCATGCTTAATGTTCCAAATAGATATTAAAAACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTTCTATCATGCTTAATGTTCCAAATAGATATTAAAAACTGGT  250

seq1  TGAGTGCCTATTACTTTTAGCTCCAGAAGATTCATGTATATTTAAGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCTATTACTTTTAGCTCCAGAAGATTCATGTATATTTAAGAAGT  300

seq1  ATTTAACTATTATAAATTATTTTGATGTCTAAAAAATAATAATAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTATTATAAATTATTTTGATGTCTAAAAAATAATAATAATATAA  350

seq1  AAATAATACACTTGTCTTTTTCACTATTAGTTTATTCACATTGGGTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATACACTTGTCTTTTTCACTATTAGTTTATTCACATTGGGTATCC  400

seq1  GTATCACTATTAAAATATATAATATCCAGGAAAAGGCATTACATACAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTATTAAAATATATAATATCCAGGAAAAGGCATTACATACAACT  450

seq1  AGTTTCCGACAATGTACTCCTACTTAAAATAGTTTCTGTTCAAAAGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCGACAATGTACTCCTACTTAAAATAGTTTCTGTTCAAAAGTGTT  500

seq1  TAATGAGGAAGTGAGGTGGCTCAGTAGGTAAAGGTGTTTGCCACCCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGAAGTGAGGTGGCTCAGTAGGTAAAGGTGTTTGCCACCCAGCT  550

seq1  TAAGGATATGAATTCATTCCTGAGGACTTACCTGGCAGAGGGTAAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATATGAATTCATTCCTGAGGACTTACCTGGCAGAGGGTAAGACAG  600

seq1  ATCCTCAACTTAAATTACAGCCTCCACCTGCACTCTATGGCATACAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAACTTAAATTACAGCCTCCACCTGCACTCTATGGCATACAGAGA  650

seq1  CGGGGTAGGGAGGGAGAAGAGAGAAGGGGGATGTTTAGTAATATAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTAGGGAGGGAGAAGAGAGAAGGGGGATGTTTAGTAATATAGGGAA  700

seq1  CACAGAGGACTTAAGTATTTAACAAACAACATCTCAAATGGTAGGATTTG  750
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  CACAGAGGACTTAAGTATTTAA-AAACAACATCTCAAATGGTAAGATTTG  749

seq1  CAAGTCTAGTCATTATTCTGTAATGTAAGAAGTATAGTTTTTTTTTTATT  800
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  CAAGTCTAGTCATTATTCTGTAATG-CAGAAGTATAGTTTTTTTTTTATT  798

seq1  TACAAAGACATTCGCAAACATTATATGATTGTTATGGCTTACTTTGAAAG  850
      ||||| ||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TACAATGACATTCGCAAACATTAAATGATTGGTATGGCTTACTTTGAAAG  848

seq1  ATTTAGCACCTACCATGT  868
      |||||||||||| |||||
seq2  ATTTAGCACCTA-CATGT  865

seq1: chr5_87894773_87895877
seq2: B6Ng01-148H22.g_69_1156 (reverse)

seq1  CAACTATTACCATTGTCTTAAAAAATACAATAAAAGTTTATGTGTAGCTA  50
      |||||||  ||  |||||  |||||||||||  ||||||||| |||||||
seq2  CAACTATGCCC--TGTCT--AAAAATACAAT--AAGTTTATG-GTAGCTA  43

seq1  CAATGACTGATGAATCCACAATTTCTTCTCTTTAGTAAAAGGCAGAAGAT  100
      |||||||||||| ||||||||||||| |||  |||||||| |||| ||||
seq2  CAATGACTGATG-ATCCACAATTTCTCCTC--TAGTAAAA-GCAGGAGAT  89

seq1  AGATTGGCTCTATCCTGTAAATCGTATTCCATCATTCACTGCCCTCCAGT  150
      ||| || |||||| |||||||||||||||||||| |||||||||||||||
seq2  AGA-TGCCTCTAT-CTGTAAATCGTATTCCATCA-TCACTGCCCTCCAGT  136

seq1  CTCTTGCTAGGAACAAATTTCTCTTATGCAGTCTGTTATACTTGGTTTAA  200
      |   ||||||||||||| ||||| |||||||||||||||||||||||| |
seq2  CCTCTGCTAGGAACAAA-TTCTCCTATGCAGTCTGTTATACTTGGTTT-A  184

seq1  AATTATGTTGGAGGATTCCCATTATGGAAATGATTCATCATTATTTCATT  250
      ||||||||| ||||||||||| ||||||||||||||||||||||||||| 
seq2  AATTATGTT-GAGGATTCCCA-TATGGAAATGATTCATCATTATTTCATG  232

seq1  GTTGGGGGAGCCCTGATTAATTTTCAGAATACAATAAACTCTGGGATGTG  300
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGAGCCCTGATTAATTTTCAGAATACAATAAACTCTGGGATGTG  282

seq1  AGATACAAATGCAAGGATAA-CCAATACACGACTTTACACTTACCATTAA  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATACAAATGCAAGGATAACCCAATACACGACTTTACACTTACCATTAA  332

seq1  GAAGAACACTGGAACAAGAAAAATATTGAATGATACTTTCAAGAGCTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACACTGGAACAAGAAAAATATTGAATGATACTTTCAAGAGCTATC  382

seq1  TAGAGAAGATGACTATGTTTATATATTAATATTAGACAATTATTCACCGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGATGACTATGTTTATATATTAATATTAGACAATTATTCACCGA  432

seq1  AAAACGTGCTTTAGGTAAGAAAAAAAACTGTCAATGAGAATCTTTTTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGCTTTAGGTAAGAAAAAAAACTGTCAATGAGAATCTTTTTAAG  482

seq1  GAAACCTGTTGATTTTGTGCAGGCTGGCAGATACTATTTCTAAAGGCCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGTTGATTTTGTGCAGGCTGGCAGATACTATTTCTAAAGGCCAT  532

seq1  CGTTTAGTAGTTTTGGCATGTGCATGAAGTCACAGAGCCTAATGAGATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAGTAGTTTTGGCATGTGCATGAAGTCACAGAGCCTAATGAGATAG  582

seq1  TTAGGTTCACTACCTGAGGATACTGAGCTCGGAGTTTCCAGGCAGTGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCACTACCTGAGGATACTGAGCTCGGAGTTTCCAGGCAGTGCAT  632

seq1  TTAATCTATCTCAAATCTCACCACCAAAATGTTTATATCCCTTACTTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTATCTCAAATCTCACCACCAAAATGTTTATATCCCTTACTTGCT  682

seq1  TTACATTACGTGTGCTTCTTCCAGGCTTTAGAGAAGTTCAGTAGATAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTACGTGTGCTTCTTCCAGGCTTTAGAGAAGTTCAGTAGATAAAT  732

seq1  TTTATATTCATAGATTTTAGAGTTAAGAAATATTTATTTACAACAGTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTCATAGATTTTAGAGTTAAGAAATATTTATTTACAACAGTTAT  782

seq1  TGAATTCTATGTTAAAGCATTCATATATGGATCTTGGATTGTTAACATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTATGTTAAAGCATTCATATATGGATCTTGGATTGTTAACATGT  832

seq1  TTGTCCTACACCAAGAAGCCTTGAGATTTTATTCCAAGAATTCAATAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTACACCAAGAAGCCTTGAGATTTTATTCCAAGAATTCAATAAAA  882

seq1  AGCTATGGGACCTCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGACACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGGACCTCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGACACC  932

seq1  ATCAATAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAAT  982

seq1  CGGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGAC  1032

seq1  TCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAGCTGAACAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAGCTGAACAAA  1082

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1088