BAC Information

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BAC

Clone NameB6Ng01-148M23
Chromosome5 (Build37)
Map Location 88,684,961 - 88,814,833
singlet/doubletdoublet
Overlap geneEG665615, Muc10, Amtn
Upstream geneLOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942
Downstream geneLOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148M23.bB6Ng01-148M23.g
ACCDH945317DH945318
length1,062416
definitionDH945317|Mus musculus domesticus DNA, BAC clone: B6Ng01-148M23, 5' end.DH945318|Mus musculus domesticus DNA, BAC clone: B6Ng01-148M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,684,961 - 88,685,843)(88,814,412 - 88,814,833)
sequence
gaattcagtaagaatgttacctattcagtaacattcaaatttacctctgg
tagagacaatgaaaataatcaggcattacaatttacttcaataaacctag
aaagctcaagggtagtctacatagtaattacttaaaacaatagccaagtc
acacccatacacaggaatacacaatggcctaggcaataggtaggtcttag
tactatttatgaaagggctagtagaatggaattccccttgtgcaggtttc
ttcactaggcccagaggaatagcataatctggtatttactaaaggacccc
tggcagtggatttaacaatagactatcattgtatcagagcattcacttgg
ctcctgtgtttagctgatcttaattagagttgctcctattctcagttgtg
aacaaggcctggctcccgccaatttttatgtatacattttctttgttttg
tgttaagaagcagtgtaccttgttggatttattcccctagcctttttgtt
tttcttctgtactaaaatccaggtgtttgcttagaaaaaaaatacattca
gataccacacttccttgtgtcttgtccatttatcacctttttctcaccaa
ctccatgcccgcctataatagaaccctgaaattatttgccacggattgag
aaaggccaactgaggtcggtccatggcattgttctcttagaaacatgaac
ccttgtctttcaatcataggctcttgtcttagataccctgcagccctcct
tttctcttctgactcctcttctaaacatccaagaacaagcactgccagcc
accctcagacaaagtggaatccacttctgctttttcaacaatggttgcca
tcataaccacttctgttgtttctgtcagcaactgtatagatgccaatacc
atctgtcctccttccagcctccagcttgatatttccacaaatggtgtggc
agccaaggcgatctcaactaccaactgacactactccaactgagcagaaa
gcataccccatatgtttcagaaatcatcccctccacttctaagaaagtac
tccacctggtac
tcttcattcaatatctctcttgaaatttcaagaaaaaatttcaggtaaat
ttaaagactttatacctcccaagaccttccactggtctctgtcttttcca
tcatgtgatgaatggggatggctcacatggaacctccaactgtgatgcgg
tttagctgaggagatctgaaacagcttactgagttcctagaagaaaaaga
gtggctttagatgcaggtgaaaacgttctgtgcttacacacggcaaggga
ctgcagttgagcagtttatctactgtgctaatgccagactattcccagtg
tactagtggcttcttgcaatattatgcaagaaagtctgaggctcattcca
agttagttacagcccatgttcatgtgtgcatacgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88684961_88685843
seq2: B6Ng01-148M23.b_229_1108

seq1  GCAATAGGTAGGTCTTAGTACTATTTATGAAAGGGCTAGTAGAATGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGGTAGGTCTTAGTACTATTTATGAAAGGGCTAGTAGAATGGAAT  50

seq1  TCCCCTTGTGCAGGTTTCTTCACTAGGCCCAGAGGAATAGCATAATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGTGCAGGTTTCTTCACTAGGCCCAGAGGAATAGCATAATCTGG  100

seq1  TATTTACTAAAGGACCCCTGGCAGTGGATTTAACAATAGACTATCATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTAAAGGACCCCTGGCAGTGGATTTAACAATAGACTATCATTGT  150

seq1  ATCAGAGCATTCACTTGGCTCCTGTGTTTAGCTGATCTTAATTAGAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGCATTCACTTGGCTCCTGTGTTTAGCTGATCTTAATTAGAGTTG  200

seq1  CTCCTATTCTCAGTTGTGAACAAGGCCTGGCTCCCGCCAATTTTTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTCTCAGTTGTGAACAAGGCCTGGCTCCCGCCAATTTTTATGTA  250

seq1  TACATTTTCTTTGTTTTGTGTTAAGAAGCAGTGTACCTTGTTGGATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTCTTTGTTTTGTGTTAAGAAGCAGTGTACCTTGTTGGATTTAT  300

seq1  TCCCCTAGCCTTTTTGTTTTTCTTCTGTACTAAAATCCAGGTGTTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAGCCTTTTTGTTTTTCTTCTGTACTAAAATCCAGGTGTTTGCTT  350

seq1  AGAAAAAAAATACATTCAGATACCACACTTCCTTGTGTCTTGTCCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAATACATTCAGATACCACACTTCCTTGTGTCTTGTCCATTTA  400

seq1  TCACCTTTTTCTCACCAACTCCATGCCCGCCTATAATAGAACCCTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTTCTCACCAACTCCATGCCCGCCTATAATAGAACCCTGAAAT  450

seq1  TATTTGCCACGGATTGAGAAAGGCCAACTGAGGTCGGTCCATGGCATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCACGGATTGAGAAAGGCCAACTGAGGTCGGTCCATGGCATTGT  500

seq1  TCTCTTAGAAACATGAACCCTTGTCTTTCAATCATAGGCTCTTGTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGAAACATGAACCCTTGTCTTTCAATCATAGGCTCTTGTCTTAG  550

seq1  ATACCCTGCAGCCCTCCTTTTCTCTTCTGACTCCTCTTCTAAACATCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGCAGCCCTCCTTTTCTCTTCTGACTCCTCTTCTAAACATCCAA  600

seq1  GAACAAGCACTGCCAGCCACCCTCAGACAAAGTGGAATCCACTTCTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGCACTGCCAGCCACCCTCAGACAAAGTGGAATCCACTTCTGCTT  650

seq1  TTTCAACAATGGTTGCCATCATAACCACTTCTGTTGTTTCTGTCAGCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAATGGTTGCCATCATAACCACTTCTGTTGTTTCTGTCAGCAAC  700

seq1  TGTATAGATGCCAATACCATCTGTCCTCCTTCCAGCCTCCAGCTTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGATGCCAATACCATCTGTCCTCCTTCCAGCCTCCAGCTTGATAT  750

seq1  TTCCACAAATGGTGTGGCAGCCAAGGCGATCTCAACTACCAACTGACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAATGGTGTGGCAGCCAAGGCGATCTCAACTACCAACTGACACT  800

seq1  ACTCCAACTGAGGCAGAAAGCAATACCCCATATGTTTCAGATATCATCAC  850
      ||||||||||| ||||||||| ||||||||||||||||||| |||||| |
seq2  ACTCCAACTGA-GCAGAAAGC-ATACCCCATATGTTTCAGAAATCATCCC  848

seq1  TCCAACTTCTAAAGACAGTACTCCAACTGGTAC  883
        | |||||| |||| ||||||||| |||||||
seq2  CTCCACTTCT-AAGAAAGTACTCCACCTGGTAC  880

seq1: chr5_88814412_88814833
seq2: B6Ng01-148M23.g_68_489 (reverse)

seq1  CACACACACACACACACACACACACACACACACGTATGCACACATGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGTATGCACACATGAACA  50

seq1  TGGGCTGTAACTAACTTGGAATGAGCCTCAGACTTTCTTGCATAATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTAACTAACTTGGAATGAGCCTCAGACTTTCTTGCATAATATTG  100

seq1  CAAGAAGCCACTAGTACACTGGGAATAGTCTGGCATTAGCACAGTAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCCACTAGTACACTGGGAATAGTCTGGCATTAGCACAGTAGATA  150

seq1  AACTGCTCAACTGCAGTCCCTTGCCGTGTGTAAGCACAGAACGTTTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCAACTGCAGTCCCTTGCCGTGTGTAAGCACAGAACGTTTTCAC  200

seq1  CTGCATCTAAAGCCACTCTTTTTCTTCTAGGAACTCAGTAAGCTGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTAAAGCCACTCTTTTTCTTCTAGGAACTCAGTAAGCTGTTTCA  250

seq1  GATCTCCTCAGCTAAACCGCATCACAGTTGGAGGTTCCATGTGAGCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTCAGCTAAACCGCATCACAGTTGGAGGTTCCATGTGAGCCATC  300

seq1  CCCATTCATCACATGATGGAAAAGACAGAGACCAGTGGAAGGTCTTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCATCACATGATGGAAAAGACAGAGACCAGTGGAAGGTCTTGGGA  350

seq1  GGTATAAAGTCTTTAAATTTACCTGAAATTTTTTCTTGAAATTTCAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAAGTCTTTAAATTTACCTGAAATTTTTTCTTGAAATTTCAAGAG  400

seq1  AGATATTGAATGAAGAGAATTC  422
      ||||||||||||||||||||||
seq2  AGATATTGAATGAAGAGAATTC  422