BAC Information

Click to search

BAC

Clone NameB6Ng01-149A22
Chromosome5 (Build37)
Map Location 148,135,600 - 148,309,130
singlet/doubletdoublet
Overlap geneLOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Upstream geneWasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903
Downstream geneFlt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149A22.bB6Ng01-149A22.g
ACCDH945499DH945500
length1,161542
definitionDH945499|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A22, 5' end.DH945500|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,307,966 - 148,309,130)(148,135,600 - 148,136,147)
sequence
ttacatattgcatataaaacaaacacttccctcttttggaggggggcaat
gctttcccactagctttagtatatacaacaattgtacaacaagaccagtc
taaacatctgcttaaaagcttgtacacaaatctgccctctgatatattac
tcatataattcagaatcatttttagtagttatatatgagaagcaaaaaac
acttgggctaactttaacatccccaaattttcaacatttaaaatactggg
gatgtgctaatatttcctttaacaacatttagtttaatacaacatctaag
cgtttttgactaaagcattcttcatgacacaagcgcatgtggatgggctg
tgtgcatccatgcagagaggtgagcatctgctctcctcctcagctcctca
ccactgtgtattttgtgacaggttctcactgaacttggaactcaccaagg
gcagacagacaaactgggctgcaaggcggaggctcctctgtctctgcctc
ccagtgctggaatcccaggagcacgtgaaccctgcccagggtgtaatgag
tgctagaaacccaaactcagacaccaactttatccactgaatccaaactc
cagcccaaacacaaggggttttctatttcaaatgtgttctttccatagaa
acaaagagagaaacatagaaatctagaagaagaagaagaaaaaaaaaaaa
aaaaagaaaacctcaggagctctcacaacagggatattagatagatttca
gaaagaaaatgtgtgctttgaaagaccatgaaaaaaagccagcatcacct
ttactctgaccagataaaaagttaaaaacacaaaatctgcaacataataa
aaatccatacaatcaaagaatatctctcattttataggagaaaaaaaaaa
tcacaaatcccaagaaataaagttattacaggaaacaattatacttgaga
aaatctcaaaactgtattttttatctagagagatggtcttgctgtttagt
tagctagccaggaataggtaatcctcctgtgttagcccagcactggctta
taagcatgaatcacagactcagtgcagaaccaattgttaagtacaagtgg
ggggtgaagatgtaactcagggtaagcacttggccgagcaaaggtaaagt
ctaggagtacc
actttgtagaccaggctggcctcggactcagaaatcggcctgcctctgcc
tcccaagtgctgggattaaaggcgggcaccaccaccgcccggcgtattta
ttattttttaatgatttattcttttatgtgcattggtgtcttgcctgaat
gtgtgtctgttacagacagttctaattattcactctacatcccaatcaca
ggctcccctcacatgacctctctcaccattcctctaaccccacccctaca
tcctactcttaaaatctttccacagcctcagtcctgatgttccctgggct
ttgagtgtagggattgcattgtagacttaccagttggggctgagcatgcc
acagtcacctagtctctgcatgatgaccatgtgtaaaggcaatcgaggct
gagagagagagaatcggcattcggtggagagccccgtgttaggctatcca
atcccgagtgtcagccctaacgacatgatcacaagaacaacactaaatgg
gcccactagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148307966_148309130
seq2: B6Ng01-149A22.b_54_1214 (reverse)

seq1  GGTACTTCCTAGGACCTTACCTTCTGCTCGG-CAAGTGCTTTACCCCTGA  49
      ||||| ||||| ||| ||||||| ||||||| |||||||||   ||||||
seq2  GGTAC-TCCTA-GACTTTACCTT-TGCTCGGCCAAGTGCTT--ACCCTGA  45

seq1  GTTACATCCTCA-CCCCCACTTGTTACTTAACAATTGGTTCTGCACTGAG  98
      |||||||| ||| |||||||||| ||||||||||||||||||||||||||
seq2  GTTACATCTTCACCCCCCACTTG-TACTTAACAATTGGTTCTGCACTGAG  94

seq1  TCTGGTGATTCATGCTTATAAGCCCAGTGCCTGGGCTAACACAGGAGGAT  148
      ||| |||||||||||||||||| |||||| ||||||||||||||||||||
seq2  TCT-GTGATTCATGCTTATAAG-CCAGTG-CTGGGCTAACACAGGAGGAT  141

seq1  TACCTATTCCTGGCTAGCTAACTAAACAGCAAGACCATCTCTCTAGATAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTCCTGGCTAGCTAACTAAACAGCAAGACCATCTCTCTAGATAA  191

seq1  AAAATACAAGTTTTGGAGATTTTTCTCAAGTAT-ATTGTTTCCTGTAATA  247
      ||||||| |||||| |||| ||||||||||||| ||||||||||||||||
seq2  AAAATAC-AGTTTT-GAGA-TTTTCTCAAGTATAATTGTTTCCTGTAATA  238

seq1  ACTTTA-TTCTTGGGA-TTGTGATTTTTTTTTTCTCCTAT-AAATGAGAG  294
      |||||| ||||||||| ||||||||||||||||||||||| |||||||||
seq2  ACTTTATTTCTTGGGATTTGTGATTTTTTTTTTCTCCTATAAAATGAGAG  288

seq1  ATATTCTTTGATTGTATGGA-TTTTATTATGTTGCAGATTTTGTGTTTTT  343
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATATTCTTTGATTGTATGGATTTTTATTATGTTGCAGATTTTGTGTTTTT  338

seq1  AACTTTTTATCTGGTCAGAGTAAAGGTGATGCTGGCTTTTTTTCATGGTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTATCTGGTCAGAGTAAAGGTGATGCTGGCTTTTTTTCATGGTC  388

seq1  TTTC-AAGCACACATTTTCTTTCTGAAATCTATCTAATATCCCTGTTGTG  442
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGCACACATTTTCTTTCTGAAATCTATCTAATATCCCTGTTGTG  438

seq1  AGAGCTCCTGAGGTTTTCTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCTGAGGTTTTCTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTA  488

seq1  GGTTTCTATGTTTCTCTCTTTGTTTCTATGGAAAGAACACATTTGAAATA  542
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTATGTTTCTCTCTTTGTTTCTATGGAAAGAACACATTTGAAATA  538

seq1  GAAAACCCCTTGTGTTTGGGCTGGAGTTTGGATTCAGTGGATAAAGTTGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCCTTGTGTTTGGGCTGGAGTTTGGATTCAGTGGATAAAGTTGG  588

seq1  TGTCTGAGTTTGGGTTTCTAGCACTCATTACACCCTGGGCAGGGTTCACG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTTTGGGTTTCTAGCACTCATTACACCCTGGGCAGGGTTCACG  638

seq1  TGCTCCTGGGATTCCAGCACTGGGAGGCAGAGACAGAGGAGCCTCCGCCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGGGATTCCAGCACTGGGAGGCAGAGACAGAGGAGCCTCCGCCT  688

seq1  TGCAGCCCAGTTTGTCTGTCTGCCCTTGGTGAGTTCCAAGTTCAGTGAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCAGTTTGTCTGTCTGCCCTTGGTGAGTTCCAAGTTCAGTGAGA  738

seq1  ACCTGTCACAAAATACACAGTGGTGAGGAGCTGAGGAGGAGAGCAGATGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCACAAAATACACAGTGGTGAGGAGCTGAGGAGGAGAGCAGATGC  788

seq1  TCACCTCTCTGCATGGATGCACACAGCCCATCCACATGCGCTTGTGTCAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTCTGCATGGATGCACACAGCCCATCCACATGCGCTTGTGTCAT  838

seq1  GAAGAATGCTTTAGTCAAAAACGCTTAGATGTTGTATTAAACTAAATGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGCTTTAGTCAAAAACGCTTAGATGTTGTATTAAACTAAATGTT  888

seq1  GTTAAAGGAAATATTAGCACATCCCCAGTATTTTAAATGTTGAAAATTTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGAAATATTAGCACATCCCCAGTATTTTAAATGTTGAAAATTTG  938

seq1  GGGATGTTAAAGTTAGCCCAAGTGTTTTTTGCTTCTCATATATAACTACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTTAAAGTTAGCCCAAGTGTTTTTTGCTTCTCATATATAACTACT  988

seq1  AAAAATGATTCTGAATTATATGAGTAATATATCAGAGGGCAGATTTGTGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATTCTGAATTATATGAGTAATATATCAGAGGGCAGATTTGTGT  1038

seq1  ACAAGCTTTTAAGCAGATGTTTAGACTGGTCTTGTTGTACAATTGTTGTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTTAAGCAGATGTTTAGACTGGTCTTGTTGTACAATTGTTGTA  1088

seq1  TATACTAAAGCTAGTGGGAAAGCATTGCCCCCCTCCAAAAGAGGGAAGTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAAAGCTAGTGGGAAAGCATTGCCCCCCTCCAAAAGAGGGAAGTG  1138

seq1  TTTGTTTTATATGCAATATGTAA  1165
      |||||||||||||||||||||||
seq2  TTTGTTTTATATGCAATATGTAA  1161

seq1: chr5_148135600_148136147
seq2: B6Ng01-149A22.g_67_614

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGGACTCAGAAATCGGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGGACTCAGAAATCGGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGGGCACCACCACCGCCCGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGGGCACCACCACCGCCCGGCG  100

seq1  TATTTATTATTTTTTAATGATTTATTCTTTTATGTGCATTGGTGTCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATTTTTTAATGATTTATTCTTTTATGTGCATTGGTGTCTTGC  150

seq1  CTGAATGTGTGTCTGTTACAGACAGTTCTAATTATTCACTCTACATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTGTGTCTGTTACAGACAGTTCTAATTATTCACTCTACATCCCA  200

seq1  ATCACAGGCTCCCCTCACATGACCTCTCTCACCATTCCTCTAACCCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGCTCCCCTCACATGACCTCTCTCACCATTCCTCTAACCCCACC  250

seq1  CCTACATCCTACTCTTAAAATCTTTCCACAGCCTCAGTCCTGATGTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCCTACTCTTAAAATCTTTCCACAGCCTCAGTCCTGATGTTCCC  300

seq1  TGGGCTTTGAGTGTAGGGATTGCATTGTAGACTTACCAGTTGGGGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTGAGTGTAGGGATTGCATTGTAGACTTACCAGTTGGGGCTGAG  350

seq1  CATGCCACAGTCACCTAGTCTCTGCATGATGACCATGTGTAAAGGCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACAGTCACCTAGTCTCTGCATGATGACCATGTGTAAAGGCAATC  400

seq1  GAGGCTGAGAGAGAGAGAATCGGCATTCGGTGGAGAGCCCCGTGTTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAGAGAGAGAGAATCGGCATTCGGTGGAGAGCCCCGTGTTAGGC  450

seq1  TATCCAATCCCGAGTGTCAGCCCTAACGACATGATCACAAGAACAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAATCCCGAGTGTCAGCCCTAACGACATGATCACAAGAACAACACT  500

seq1  AAATGGGCCCACTAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCCCACTAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  548