BAC Information

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BAC

Clone NameB6Ng01-149J23
Chromosome5 (Build37)
Map Location 145,563,031 - 145,704,866
singlet/doubletdoublet
Overlap geneTrrap, Smurf1
Upstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427
Downstream geneAW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149J23.bB6Ng01-149J23.g
ACCDH945911DH945912
length1,096601
definitionDH945911|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J23, 5' end.DH945912|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,563,031 - 145,564,145)(145,704,266 - 145,704,866)
sequence
gaattcaagtcataaagcttgtgcggtgggtgcttttatctgcagagtct
tctagcctgtcaacgcctcctttttcttttaaaagaacctagcacctgat
tttagatgagtagagctttaaacttctcactctacctggataagtgtggg
catacagatgtgtatcgtcaaagtctggcttatacatgcaaggctctgta
tgtgccatacatgctatatgcctagcctcagttttgagttttaactgaag
taattggaaaatgatacagtgtatttttggaaatacttagaaaaacggcc
ttaatgtggaatttgtctacttggttttcaaacagctgcaatttaatgga
ggttagtttgaagtactggttctggggctagggagacagctcagctagtt
aagggcgcttgcagataagcctgggaatctgagttcagtccttagaatcc
acacagggcaagaaaggaccaactcttgcagtttgtcttctgacctcttc
ataactgcaaaggcatgtggactgtgtcatatgtgtgcccacatacaatc
tacacatgtacagaataataaaatgtaatttgaatattaggaatggcttc
agagttcttaaccccaggggaaatgaaactgatgtgtaatcagatgtcac
tctcgctcccatgagtgaccttggctttgtcctgtgcctgcttcccctct
tcccaggtcctttcttgctaccttgctaccaggtgggtagccagcccagc
acagccatgttccacagtgaagaaaatgggtccaaaggaatggatccctt
ggtccttattgatgccatagctatctgtatggcttatgaagaaaaggaac
tgtgcaagattgggggaggtagccctggccgtgatatttgacgtgcgagc
atcatcctggctcaaagagagggtaagacgtctgaacagtttgcagcgct
tgttaagaaagcagcaccgactattcctggctgtttctctcagcatgcca
gctgcctctctcttacatgtgaagcgttgtgcgctgctgctatgagcagc
ctgtaatgcaagctgggggcgtggtgtcattaagtttccaatggag
gaattctaatgacttaagccaggcctgatgacacacacctgcagttcttg
acttggaaggctaaggcaggattgtgagtttcataccagcctggccacat
agcaagaccctgaccaaaaaaagaaaacaaacaaataaacaaaccaaagc
aaaccaagcaacaacaaaaaccaaaccaaaaaatcccaatcaaatgaaaa
ttaaaagccacgaaaagcaggccattcgttgctaacagcatggagagtgt
cccaggtggtacagtgagggcacagtggccccaggtagggaccttgtctg
ccaacaaccctcattcccatgagcccttgggctttgtctgagcggtggtg
cccaggagtctagcctcctcttggccatggtgctatggtttggtctgtca
gctgtatgggtgaggtgtgagtagacatgttaagtggtccccgcctgcca
caggcactgtgaggagacgtcttgggcaggggcaccaggaagttctcctg
gcggccagagtccaagcctttcctgggctgctgtttacaggggttcagct
ttgttcccagagtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145563031_145564145
seq2: B6Ng01-149J23.b_44_1139

seq1  GAATTCAAGTCATAAAGCTTGTGCGGTGGGTGCTTTTATCTGCAGAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCATAAAGCTTGTGCGGTGGGTGCTTTTATCTGCAGAGTCT  50

seq1  TCTAGCCTGTCAACGCCTCCTTTTTCTTTTAAAAGAACCTAGCACCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTGTCAACGCCTCCTTTTTCTTTTAAAAGAACCTAGCACCTGAT  100

seq1  TTTAGATGAGTAGAGCTTTAAACTTCTCACTCTACCTGGATAAGTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGAGTAGAGCTTTAAACTTCTCACTCTACCTGGATAAGTGTGGG  150

seq1  CATACAGATGTGTATCGTCAAAGTCTGGCTTATACATGCAAGGCTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGATGTGTATCGTCAAAGTCTGGCTTATACATGCAAGGCTCTGTA  200

seq1  TGTGCCATACATGCTATATGCCTAGCCTCAGTTTTGAGTTTTAACTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATACATGCTATATGCCTAGCCTCAGTTTTGAGTTTTAACTGAAG  250

seq1  TAATTGGAAAATGATACAGTGTATTTTTGGAAATACTTAGAAAAACGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGAAAATGATACAGTGTATTTTTGGAAATACTTAGAAAAACGGCC  300

seq1  TTAATGTGGAATTTGTCTACTTGGTTTTCAAACAGCTGCAATTTAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGGAATTTGTCTACTTGGTTTTCAAACAGCTGCAATTTAATGGA  350

seq1  GGTTAGTTTGAAGTACTGGTTCTGGGGCTAGGGAGACAGCTCAGCTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTTGAAGTACTGGTTCTGGGGCTAGGGAGACAGCTCAGCTAGTT  400

seq1  AAGGGCGCTTGCAGATAAGCCTGGGAATCTGAGTTCAGTCCTTAGAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGCTTGCAGATAAGCCTGGGAATCTGAGTTCAGTCCTTAGAATCC  450

seq1  ACACAGGGCAAGAAAGGACCAACTCTTGCAGTTTGTCTTCTGACCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCAAGAAAGGACCAACTCTTGCAGTTTGTCTTCTGACCTCTTC  500

seq1  ATAACTGCAAAGGCATGTGGACTGTGTCATATGTGTGCCCACATACAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCAAAGGCATGTGGACTGTGTCATATGTGTGCCCACATACAATC  550

seq1  TACACATGTACAGAATAATAAAATGTAATTTGAATATTAGGAATGGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTACAGAATAATAAAATGTAATTTGAATATTAGGAATGGCTTC  600

seq1  AGAGTTCTTAACCCCAGGGGAAATGAAACTGATGTGTAATCAGATGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTTAACCCCAGGGGAAATGAAACTGATGTGTAATCAGATGTCAC  650

seq1  TCTCGCTCCCATGAGTGACCTTGGCTTTGTCCTGTGCCTGCTTCCCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTCCCATGAGTGACCTTGGCTTTGTCCTGTGCCTGCTTCCCCTCT  700

seq1  TCCCAGGTCCTTTCTTGCTACCTTGCTACCAGGTGGGTAGCCAGCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTCCTTTCTTGCTACCTTGCTACCAGGTGGGTAGCCAGCCCAGC  750

seq1  ACAGCCATGTTCCACAGTGAAGAAAATGGGTCCAAAGGAATGGATCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATGTTCCACAGTGAAGAAAATGGGTCCAAAGGAATGGATCCCTT  800

seq1  GGTCCTTATTGATGCCATAGCTATCTGTATGGCTTATGAAGAAAAGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTATTGATGCCATAGCTATCTGTATGGCTTATGAAGAAAAGGAAC  850

seq1  TGTGCAAGATT-GGGGAGGTAGCCCTGGCCGTGATATTTGACGTGGCGAG  899
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TGTGCAAGATTGGGGGAGGTAGCCCTGGCCGTGATATTTGACGT-GCGAG  899

seq1  CATCATCCTGGGCTCAAAAGAGAGGGTAAGGACGTCTGAACAGTTTGCAG  949
      ||||||||| ||||| ||||||||||||| ||||||||||||||||||| 
seq2  CATCATCCT-GGCTC-AAAGAGAGGGTAA-GACGTCTGAACAGTTTGCA-  945

seq1  GCGCTTGGTCAGAAAGGCAGCACCGACTTATTCCTGGCTTGTTTCTCTCC  999
      ||||||| | ||||| ||||||||||| |||||||||| |||||||||| 
seq2  GCGCTTGTTAAGAAA-GCAGCACCGAC-TATTCCTGGC-TGTTTCTCTC-  991

seq1  AGGCATGCCAGCTGCCCCTCTTCTCCTACATTGTGGAGCGGTTGTGCGCC  1049
        |||||||||||||| |   |||| |||| |||| ||| |||||||| |
seq2  -AGCATGCCAGCTGCCTC---TCTCTTACA-TGTGAAGC-GTTGTGCG-C  1034

seq1  TGCTGCTATGAGCAGGCCTGGTATGCAAAGCTGGGGGGCGTGGTGTCCAT  1099
      |||||||||||||| |||||  |||| ||||| ||||||||||||| |||
seq2  TGCTGCTATGAGCA-GCCTGTAATGC-AAGCT-GGGGGCGTGGTGT-CAT  1080

seq1  TAAGTTTCTCATGGAG  1115
      ||||||||  ||||||
seq2  TAAGTTTCCAATGGAG  1096

seq1: chr5_145704266_145704866
seq2: B6Ng01-149J23.g_69_669 (reverse)

seq1  AGACTCTCTCTCTCACACACACACACACACACACACACACTCTGGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCTCTCTCACACACACACACACACACACACACACTCTGGGAACA  50

seq1  AAGCTGAACCCCTGTAAACAGCAGCCCAGGAAAGGCTTGGACTCTGGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAACCCCTGTAAACAGCAGCCCAGGAAAGGCTTGGACTCTGGCCG  100

seq1  CCAGGAGAACTTCCTGGTGCCCCTGCCCAAGACGTCTCCTCACAGTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAACTTCCTGGTGCCCCTGCCCAAGACGTCTCCTCACAGTGCCT  150

seq1  GTGGCAGGCGGGGACCACTTAACATGTCTACTCACACCTCACCCATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGCGGGGACCACTTAACATGTCTACTCACACCTCACCCATACAG  200

seq1  CTGACAGACCAAACCATAGCACCATGGCCAAGAGGAGGCTAGACTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGACCAAACCATAGCACCATGGCCAAGAGGAGGCTAGACTCCTGG  250

seq1  GCACCACCGCTCAGACAAAGCCCAAGGGCTCATGGGAATGAGGGTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCGCTCAGACAAAGCCCAAGGGCTCATGGGAATGAGGGTTGTTG  300

seq1  GCAGACAAGGTCCCTACCTGGGGCCACTGTGCCCTCACTGTACCACCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAAGGTCCCTACCTGGGGCCACTGTGCCCTCACTGTACCACCTGG  350

seq1  GACACTCTCCATGCTGTTAGCAACGAATGGCCTGCTTTTCGTGGCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCTCCATGCTGTTAGCAACGAATGGCCTGCTTTTCGTGGCTTTTA  400

seq1  ATTTTCATTTGATTGGGATTTTTTGGTTTGGTTTTTGTTGTTGCTTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTGATTGGGATTTTTTGGTTTGGTTTTTGTTGTTGCTTGGTT  450

seq1  TGCTTTGGTTTGTTTATTTGTTTGTTTTCTTTTTTTGGTCAGGGTCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTTTGTTTATTTGTTTGTTTTCTTTTTTTGGTCAGGGTCTTGC  500

seq1  TATGTGGCCAGGCTGGTATGAAACTCACAATCCTGCCTTAGCCTTCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGCCAGGCTGGTATGAAACTCACAATCCTGCCTTAGCCTTCCAAG  550

seq1  TCAAGAACTGCAGGTGTGTGTCATCAGGCCTGGCTTAAGTCATTAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACTGCAGGTGTGTGTCATCAGGCCTGGCTTAAGTCATTAGAATT  600

seq1  C  601
      |
seq2  C  601