BAC Information

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BAC

Clone NameB6Ng01-150P13
Chromosome5 (Build37)2 (Build37)
Map Location 9,814,061 - 9,814,57873,063,058 - 73,063,989
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAbcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150P13.bB6Ng01-150P13.g
ACCDH946912DH946913
length959931
definitionDH946912|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P13, 5' end.DH946913|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,814,061 - 9,814,578)(73,063,058 - 73,063,989)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcagtttta
tgaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttttccccat
ccagtggaaaaaagacagcattttcaacaaatggtgctggcacaactgat
ggttatcatgtagaagaatgagaattgatccattcctatctccttgtact
aaggtcaaatctaagtgtatcaaggaactccacataaaaccagagacact
gaaacttatagaggagaaagtggggaagaaccctagttttttaaaaaaaa
agagccctagttaaagtaggttttgaaaaatctaagtctgatcccacaag
taggcaagagtcagagagagctcctaatcttagaattcccacaagaacac
caagctaattacccataacataaatgcagatcccgacaggctccctgatc
tccgagagcccccataagcctcagtcagttgattctgttctcatggtggc
cctgaccctctggttctcctttctccagctctctggatccttcctctttc
tccttcccctctccctccccctcctcctcctctgcaggactctgtaagct
ctgcctaatgcttggctgtggaactttgcatctgctgccatcaattgctg
gattgccgacgattctgctaggtttcagtcccgggacactctgaagtcac
gacaaagcttaagtgagtttcctggggcgatctcatgacctggttctgca
gtttgggag
gaattcagtgagagaccctgtctcaaaaaggacagaagccaggtggtaag
ggcacacatctttaatcctagcactggggagagaaaggcagcctggtcta
cagtaccagagtgagttccaggacaggcagagctacacagagaaaccctg
tctcgaaaaagcgaaaaacaacaaaacaaaaacaaacaaacaaaaagagg
aaggagagtgattgaggaaataacacgacctgcatatgctcagatgtgtg
ttatgttgagcatgtatgtgtgaggaaataacacgacctgcatatgctca
gatgtgtgttatgttgagcatgtatgtgtgaaccaggaacataaagaatc
tgaaaggccaatataagagcctagctgttgcaacaaataagtctagagcc
actcagcttggggtaagtttgaagcgagacttctgggcccttttcatatg
gctgagattcatatgaagacttggctctcaggatttatggaaacggaaaa
gtcccatagtctaactcctgcaatttggagactcagagaagctgctgctg
aagtcctgatgaccagagagatgatggtataactctcagagggccgatgt
cgcagccggagaactctgtctgaggagttctgtcctgcaccttttagttc
cacatctggcgatacctctgttcattttcaaccattcatcaatcgccaga
taactggattgtttcttccctttgagtcattgtaataccacggacattta
tttacagctttattcaatttaaaggaagggttctgtgggatgtcttcaat
aaagtgaatgtgtgtgtgcctggtgggggtgtggtttgtgtgttgtcttc
tttcagttttaagattggaatccattttcagcagagaaagccagctagga
agaaatctgatttctggaatggtaaattggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_9814061_9814578
seq2: B6Ng01-150P13.b_113_459 (reverse)

seq1  TAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACAATCTT  50
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCTCATTCTT  50

seq1  CTACATGATAACTGCCAGTTGTGCCAGCACCATTTATTGAAAATGCTGCC  100
      ||||||||||||   |||||||||||||||||||| |||||||||||| |
seq2  CTACATGATAACCATCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC  100

seq1  TTTTTTCCACTGGATGGTTTTTGCTCCCTTGTCAACGATCAAGTGACGAT  150
      |||||||||||||||||             |  ||   ||    || |||
seq2  TTTTTTCCACTGGATGG------------GGAAAAGCCTC----GAAGAT  134

seq1  AGGTGCTTGGGTTCATTTTTGGGTCGTCAATTCTATTCCATTGGTCTACT  200
      |                  ||||                           
seq2  A------------------TGGG---------------------------  139

seq1  TGTCTGTCGCTATACCAGTATCATGCAGTTTTTATCACAATTGCTCTGTA  250
                                         ||||           
seq2  -----------------------------------CACA-----------  143

seq1  GTACAGCTTTAGGTCAGTCCTGGTGATTCTACCAGAGGTTCTTAATTTCT  300
                           || ||                 |||| ||
seq2  ---------------------GGGGA---------------AAAATTCCT  157

seq1  GAATAGAACAGCAATGGCTTGTACTGTAAGATTGAGAATCGACAAATGGG  350
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  GAATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATTGACAAATGGG  207

seq1  ATCTCATAAAATTGCAAAGCTTTTGCAAGGCAAAAGACACCGTCAATAAG  400
      | ||||||||| |||||||||| || ||||||||||||||||||||||||
seq2  ACCTCATAAAACTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAG  257

seq1  ACAAAGAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC  450
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC  307

seq1  AGATAGGGGACTAATATCTAGTATCTAGTATCTAATGTCTTTATATCTTT  500
      ||||||||||||||||||                            |  |
seq2  AGATAGGGGACTAATATC----------------------------CAAT  329

seq1  ATATATAAAGAACTCAAG  518
      ||||||||||||||||||
seq2  ATATATAAAGAACTCAAG  347

seq1: chr2_73063058_73063989
seq2: B6Ng01-150P13.g_67_997

seq1  GAATTCAGTGAGAGACCCTGTCTCAAAAAGGACAGAAGCCAGGTGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGAGACCCTGTCTCAAAAAGGACAGAAGCCAGGTGGTAAG  50

seq1  GGCACACATCTTTAATCCTAGCACTGGGGAGAGAAAGGCAGCCTGGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACATCTTTAATCCTAGCACTGGGGAGAGAAAGGCAGCCTGGTCTA  100

seq1  CAGTACCAGAGTGAGTTCCAGGACAGGCAGAGCTACACAGAGAAACCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCAGAGTGAGTTCCAGGACAGGCAGAGCTACACAGAGAAACCCTG  150

seq1  TCTCGAAAAAGCGAAAAACAACAAAACAAAAACAAACAAACAAAAAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAAAAAGCGAAAAACAACAAAACAAAAACAAACAAACAAAAAGAGG  200

seq1  AAGGAGAGTGATTGAGGAAATAACACGACCTGCATATGCTCAGATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGTGATTGAGGAAATAACACGACCTGCATATGCTCAGATGTGTG  250

seq1  TTATGTTGAGCATGTATGTGTGAGGAAATAACACGACCTGCATATGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGAGCATGTATGTGTGAGGAAATAACACGACCTGCATATGCTCA  300

seq1  GATGTGTGTTATGTTGAGCATGTATGTGTGAACCAGGAACATAAAGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGTTATGTTGAGCATGTATGTGTGAACCAGGAACATAAAGAATC  350

seq1  TGAAAGGCCAATATAAGAGCCTAGCTGTTGCAACAAATAAGTCTAGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCCAATATAAGAGCCTAGCTGTTGCAACAAATAAGTCTAGAGCC  400

seq1  ACTCAGCTTGGGGTAAGTTTGAAGCGAGACTTCTGGGCCCTTTTCATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTTGGGGTAAGTTTGAAGCGAGACTTCTGGGCCCTTTTCATATG  450

seq1  GCTGAGATTCATATGAAGACTTGGCTCTCAGGATTTATGGAAACGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATTCATATGAAGACTTGGCTCTCAGGATTTATGGAAACGGAAAA  500

seq1  GTCCCATAGTCTAACTCCTGCAATTTGGAGACTCAGAGAAGCTGCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATAGTCTAACTCCTGCAATTTGGAGACTCAGAGAAGCTGCTGCTG  550

seq1  AAGTCCTGATGACCAGAGAGATGATGGTATAACTCTCAGAGGGCCGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGATGACCAGAGAGATGATGGTATAACTCTCAGAGGGCCGATGT  600

seq1  CGCAGCCGGAGAACTCTGTCTGAGGAGTTCTGTCCTGCACCTTTTAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCCGGAGAACTCTGTCTGAGGAGTTCTGTCCTGCACCTTTTAGTTC  650

seq1  CACATCTGGCGATACCTCTGTTCATTTTCAACCATTCATCAATCGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGGCGATACCTCTGTTCATTTTCAACCATTCATCAATCGCCAGA  700

seq1  TAACTGGATTGTTTCTTCCCTTTGAGTCATTGTAATACCACGGACATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATTGTTTCTTCCCTTTGAGTCATTGTAATACCACGGACATTTA  750

seq1  TTTACAGCTTTATTCAATTTAAAGGAAGGGTTCTGTGGGATGTCTTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCTTTATTCAATTTAAAGGAAGGGTTCTGTGGGATGTCTTCAAT  800

seq1  AAAGTGAATGTGTGTGTGCCTGGTGGGGGTGTGGTTTGTGTGTTGTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAATGTGTGTGTGCCTGGTGGGGGTGTGGTTTGTGTGTTGTCTTC  850

seq1  TTTCAGTTTTTAAGATTGGAATCCATATTTCAGCAGAGAAAGCCAGCTA-  899
      |||||| ||||||||||||||||||| |||||||||||||||||||||| 
seq2  TTTCAG-TTTTAAGATTGGAATCCAT-TTTCAGCAGAGAAAGCCAGCTAG  898

seq1  GAAGAAAACTGATTTCTGGAGTGGGAAATTGGG  932
      ||||||| |||||||||||| ||| ||||||||
seq2  GAAGAAATCTGATTTCTGGAATGGTAAATTGGG  931