BAC Information

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BAC

Clone NameB6Ng01-151G12
Chromosome5 (Build37)
Map Location 40,789,760 - 40,978,461
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839, LOC100040502
Downstream geneLOC208522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151G12.bB6Ng01-151G12.g
ACCDH947231DH947232
length1,0651,071
definitionDH947231|Mus musculus domesticus DNA, BAC clone: B6Ng01-151G12, 5' end.DH947232|Mus musculus domesticus DNA, BAC clone: B6Ng01-151G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,977,300 - 40,978,461)(40,789,760 - 40,790,834)
sequence
gaattccactagtttgagtgaataagagggcctagtcattactacttcca
gcaatgactctggtgaacatatacatacatatatcgttgttttgtaaaag
gcacaggtgatagtctgtcttggttttgaacttgactgcattttgagatt
cctagaacatgtgcaacacaaccacaacaaccatttcaagggggatcgat
atgtaggaaaattgacgtgaaggagagtggagacccactccgttgtgaat
tggggttaattttccaatttagaatgaagagaaaaaggcagcacatgctg
ttacttccaagtgcttttttttttccctcagtgagtaggtttattggtcg
taacttcagtctctagtttctttattcttttagaatggacacagtgccag
catggttcctaggatttctcaagctttcagcattaaacagggatttttag
aatatcctgaattatgtattgagaacctagattttctgacaatccagagt
gtttatgggtcattattgaattacccaatacttgtggcatacccaagcag
ataaacatggttttacacacacacacacacacacacacacacacacacac
acacacacatacacacacacacagttttatggagggcttcctatgtaaaa
ctttaactaacactatcctgcagaaacatcttcaatatgccctatgcttt
tcttatatccttgtatttgaaatcctatccactatcttccacctacaaaa
taaactcagtgaaaaagcaaatgaaaaaactagggtagaacctaggaaag
gctatcaaaatgacatattatacaggagaattacccaaggacctttataa
aataatttagcttccagaatttcttagtgatgtgtagggtaataaaatct
ttgaaagcagtgtcttaactgagagaggccagagagaaaatgagatgacg
atcacattcattttcaaacctctcacttgactgtatttttttttttttct
gaaacgagcatgtgctgatttgaaatgagctacaagtcagtgagaagaat
cacaatttgatgcaa
gaattcctttatatatttaccacacattattttattttaattgagccact
ccatcctctctttaatccatctattcagaggattcctagtagttaatttt
acaccaatttctcatgccataatttctccaggaagttaaaaacaaaatta
tgtatgttgatattttgtgtgaatgtgtgtctgtatactggttgtatgca
acattcgtggaagccagatgaaggcattagatcttttgagtctgtagtca
cagacagttgtgagccattttgtgcattctgggagtcaaattgaattcat
ctgaaatagcatctggttcgtataagcaccaagccagattctacatactc
tagctccataggaaagagaactacatatatcaagaattttagtttgctta
ttttgtcattatatttttcaattgtgaatgtgcttttcagaattcctata
tctaacttctacaagtcctctttgtttgaatgactgaagagccctaaagt
atgtaactgaacttaccatatgccttaaaaactgtgttattctttttgaa
cttccgtctcataacatatctattattgccaaaagctagggttcattctt
cactgctccataccttacttcattttaatttttgttaatatgtcctatag
ataccttctgagagacactcttttctcaggaatatggcctgtgttgtttt
tgaagcatactattaaaatcaaactttgcatctacttcataatcgagaag
cagctcattaatttttctacctattcaaatatcattttattcaatattca
gcatttagaaccatcgtgggagttatatggtcccctcaaagtattttgtt
agatttatatgcagtgattgtaaagacagcccccaccatagtgtaatgtg
aagcttttggataaatctaaacgtcttaattctaggttgtgagtgcattc
atgcttttatttagaataataaccacagcactgggaaacacatatttcat
aattatttgatgatttttggatcgatgaatatacgagtattaagaagata
gcagaaatatgagcagtgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40977300_40978461
seq2: B6Ng01-151G12.b_47_1111 (reverse)

seq1  TTGCATCAAATAGGTTTATGCTGTCTGCTCATACACCTAATGTTCTTTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTAGAAGGTCCTAGCACCTGCGAGAATCCATAGCACTGCATTCAAATTG  100
                                           |||| ||||||||
seq2  ------------------------------------TTGCA-TCAAATTG  13

seq1  TGATTTCTTCTTCACCTGACTTTGTAGCTCATTTCAAAATCAAGCACATG  150
      ||| |||||| ||| ||||| |||||||||||||| ||||| ||||||||
seq2  TGA-TTCTTC-TCA-CTGAC-TTGTAGCTCATTTC-AAATC-AGCACATG  57

seq1  CTCGTTTCAGAAAAAAAAAAAAATACAGTCAAGGTGAGAGGTTTTGAAAA  200
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  CTCGTTTCAGAAAAAAAAAAAAATACAGTCAA-GTGAGAGG-TTTGAAAA  105

seq1  TGAATGTGATCGTCATCTCATTTTCTCCTCTGGCCTCTCCTCAGTTAAGA  250
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TGAATGTGATCGTCATCTCATTTTCT-CTCTGGCCTCT-CTCAGTTAAGA  153

seq1  CACTGCTTTCAAAGATTTTATTACCCTACACATCACTAAGAAATTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTTCAAAGATTTTATTACCCTACACATCACTAAGAAATTCTGGA  203

seq1  AGCTAAATTATTTTATGAAGGTCCTTGGGTAATTCTCCTGTATAATATGT  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCTAAATTATTTTATAAAGGTCCTTGGGTAATTCTCCTGTATAATATGT  253

seq1  CATTTTGATAGCCTTTCCTAGGTTCTACCCTAGTTTTTTCATTTGCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGATAGCCTTTCCTAGGTTCTACCCTAGTTTTTTCATTTGCTTTT  303

seq1  TCACTGAGTTTATTTTGTAGGTGGAAGATAGTGGATAGGATTTCAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGTTTATTTTGTAGGTGGAAGATAGTGGATAGGATTTCAAATAC  353

seq1  AAGGATATAAGAAAAGCATAGGGCATATTGAAGATGTTTCTGCAGGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATAAGAAAAGCATAGGGCATATTGAAGATGTTTCTGCAGGATAG  403

seq1  TGTTAGTTAAAGTTTTACATAGGAAGCCCTCCATAAAACTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTAAAGTTTTACATAGGAAGCCCTCCATAAAACTGTGTGTGTGT  453

seq1  GTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAA  503

seq1  AACCATGTTTATCTGCTTGGGTATGCCACAAGTATTGGGTAATTCAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTTTATCTGCTTGGGTATGCCACAAGTATTGGGTAATTCAATAA  553

seq1  TGACCCATAAACACTCTGGATTGTCAGAAAATCTAGGTTCTCAATACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCATAAACACTCTGGATTGTCAGAAAATCTAGGTTCTCAATACATA  603

seq1  ATTCAGGATATTCTAAAAATCCCTGTTTAATGCTGAAAGCTTGAGAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGATATTCTAAAAATCCCTGTTTAATGCTGAAAGCTTGAGAAATC  653

seq1  CTAGGAACCATGCTGGCACTGTGTCCATTCTAAAAGAATAAAGAAACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAACCATGCTGGCACTGTGTCCATTCTAAAAGAATAAAGAAACTAG  703

seq1  AGACTGAAGTTACGACCAATAAACCTACTCACTGAGGGAAAAAAAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAGTTACGACCAATAAACCTACTCACTGAGGGAAAAAAAAAAGC  753

seq1  ACTTGGAAGTAACAGCATGTGCTGCCTTTTTCTCTTCATTCTAAATTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAGTAACAGCATGTGCTGCCTTTTTCTCTTCATTCTAAATTGGA  803

seq1  AAATTAACCCCAATTCACAACGGAGTGGGTCTCCACTCTCCTTCACGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACCCCAATTCACAACGGAGTGGGTCTCCACTCTCCTTCACGTCA  853

seq1  ATTTTCCTACATATCGATCCCCCTTGAAATGGTTGTTGTGGTTGTGTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTACATATCGATCCCCCTTGAAATGGTTGTTGTGGTTGTGTTGC  903

seq1  ACATGTTCTAGGAATCTCAAAATGCAGTCAAGTTCAAAACCAAGACAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCTAGGAATCTCAAAATGCAGTCAAGTTCAAAACCAAGACAGAC  953

seq1  TATCACCTGTGCCTTTTACAAAACAACGATATATGTATGTATATGTTCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCTGTGCCTTTTACAAAACAACGATATATGTATGTATATGTTCAC  1003

seq1  CAGAGTCATTGCTGGAAGTAGTAATGACTAGGCCCTCTTATTCACTCAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCATTGCTGGAAGTAGTAATGACTAGGCCCTCTTATTCACTCAAA  1053

seq1  CTAGTGGAATTC  1162
      ||||||||||||
seq2  CTAGTGGAATTC  1065

seq1: chr5_40789760_40790834
seq2: B6Ng01-151G12.g_68_1138

seq1  GAATTCCTTTATATATTTACCACACATTATTTTATTTTAATTGAGCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTATATATTTACCACACATTATTTTATTTTAATTGAGCCACT  50

seq1  CCATCCTCTCTTTAATCCATCTATTCAGAGGATTCCTAGTAGTTAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCTCTTTAATCCATCTATTCAGAGGATTCCTAGTAGTTAATTTT  100

seq1  ACACCAATTTCTCATGCCATAATTTCTCCAGGAAGTTAAAAACAAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATTTCTCATGCCATAATTTCTCCAGGAAGTTAAAAACAAAATTA  150

seq1  TGTATGTTGATATTTTGTGTGAATGTGTGTCTGTATACTGGTTGTATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTGATATTTTGTGTGAATGTGTGTCTGTATACTGGTTGTATGCA  200

seq1  ACATTCGTGGAAGCCAGATGAAGGCATTAGATCTTTTGAGTCTGTAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGTGGAAGCCAGATGAAGGCATTAGATCTTTTGAGTCTGTAGTCA  250

seq1  CAGACAGTTGTGAGCCATTTTGTGCATTCTGGGAGTCAAATTGAATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTTGTGAGCCATTTTGTGCATTCTGGGAGTCAAATTGAATTCAT  300

seq1  CTGAAATAGCATCTGGTTCGTATAAGCACCAAGCCAGATTCTACATACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAGCATCTGGTTCGTATAAGCACCAAGCCAGATTCTACATACTC  350

seq1  TAGCTCCATAGGAAAGAGAACTACATATATCAAGAATTTTAGTTTGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCATAGGAAAGAGAACTACATATATCAAGAATTTTAGTTTGCTTA  400

seq1  TTTTGTCATTATATTTTTCAATTGTGAATGTGCTTTTCAGAATTCCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCATTATATTTTTCAATTGTGAATGTGCTTTTCAGAATTCCTATA  450

seq1  TCTAACTTCTACAAGTCCTCTTTGTTTGAATGACTGAAGAGCCCTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTCTACAAGTCCTCTTTGTTTGAATGACTGAAGAGCCCTAAAGT  500

seq1  ATGTAACTGAACTTACCATATGCCTTAAAAACTGTGTTATTCTTTTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTGAACTTACCATATGCCTTAAAAACTGTGTTATTCTTTTTGAA  550

seq1  CTTCCGTCTCATAACATATCTATTATTGCCAAAAGCTAGGGTTCATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTCTCATAACATATCTATTATTGCCAAAAGCTAGGGTTCATTCTT  600

seq1  CACTGCTCCATACCTTACTTCATTTTAATTTTTGTTAATATGTCCTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCCATACCTTACTTCATTTTAATTTTTGTTAATATGTCCTATAG  650

seq1  ATACCTTCTGAGAGACACTCTTTTCTCAGGAATATGGCCTGTGTTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTCTGAGAGACACTCTTTTCTCAGGAATATGGCCTGTGTTGTTTT  700

seq1  TGAAGCATACTATTAAAATCAAACTTTGCATCTACTTCATAATCGAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATACTATTAAAATCAAACTTTGCATCTACTTCATAATCGAGAAG  750

seq1  CAGCTCATTAATTTTTCTACCTATTCAAATATCATTTTATTCAATATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATTAATTTTTCTACCTATTCAAATATCATTTTATTCAATATTCA  800

seq1  GCATTTAGAACCATCGTGGGAGTTATATGGTCCCCTCAAAGTATTTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGAACCATCGTGGGAGTTATATGGTCCCCTCAAAGTATTTTGTT  850

seq1  AGATTTATATGCAGTGATTGTAAAGACAG-CCCCACCATAGTGTAATGTG  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGATTTATATGCAGTGATTGTAAAGACAGCCCCCACCATAGTGTAATGTG  900

seq1  AAGCTTTTGGATAAATCTAAACGTCTTAATTCTAGGTTGTGAGGTGGCAT  949
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AAGCTTTTGGATAAATCTAAACGTCTTAATTCTAGGTTGTGAG--TGCAT  948

seq1  TCATGCTTTTATTTAGAATAATAACCACAGCACTGGAAAACAACATATTT  999
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TCATGCTTTTATTTAGAATAATAACCACAGCACTGGGAAAC-ACATATTT  997

seq1  CATAATTATTTGATGAATTTTTGAATCGATGAATATACGAGTATAAAGAA  1049
      ||||||||||||||| ||||||| |||||||||||||||||||| |||||
seq2  CATAATTATTTGATG-ATTTTTGGATCGATGAATATACGAGTATTAAGAA  1046

seq1  GATAAGCAGAAATATGAGCAGTGTAA  1075
      ||| ||||||||||||||||||||||
seq2  GAT-AGCAGAAATATGAGCAGTGTAA  1071