BAC Information

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BAC

Clone NameB6Ng01-151G23
Chromosome5 (Build37)
Map Location 116,036,143 - 116,208,570
singlet/doubletdoublet
Overlap geneGcn1l1, LOC100042199, Rab35, Ccdc64
Upstream geneBC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp
Downstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151G23.bB6Ng01-151G23.g
ACCDH947253DH947254
length1,115326
definitionDH947253|Mus musculus domesticus DNA, BAC clone: B6Ng01-151G23, 5' end.DH947254|Mus musculus domesticus DNA, BAC clone: B6Ng01-151G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,036,143 - 116,037,264)(116,208,245 - 116,208,570)
sequence
gaattcattcctgtgggcgagtcaggctcagtagaagcgggggcttggga
gggctgtagagacaggggtgccgcgtgcgtgtgcggggagctaccgtgtc
agctgtaattacaactgcatgggtaattggtgctgtctggtgttgttagc
cgagtgccagtggaactgtgggaactcttctcccccaccgggcgacacgg
aaactactggtttctaccctagcagaaaaggaacaatgatctccaaatgt
atgcgcaaaattctaggttgcctcacaggagtctgctgctaattagggat
ttgaaaagtcttttgactcacgaatcacaacatcctattaatgagctaca
actcttagtcactttgtggcttacatttttttatagttagcttttgatta
agagcgacgttcctatagttcaaagacacggtgggagggaatccgcactg
aaatctcactgggatttgctgctctgggtccttgaagttacacatgtgta
gccctccgtccaagcacagctgtgtgtcaccaccatgcttcccaggctgg
gaatcagtcccttgtccccagactacaagtccaagccactgacccgctca
cccagcttgcttacacttctcctccccttctcttctcttcttttctttta
ttttttttggtttttgagactgggtttctctgtgtagcttcaaagctcca
cctgcccctgcccctgtcccctgagtgctgggttaaaagtgtcatcatca
ccactgcccagctgtgtctctttttttaaagtttatttcgtgtgtgagtt
tttgctttcatgtatgtctgcacctggtactcttgcagggtcagctggag
ttagggatggatgtgagccactgtgagggtatgggaatccagcctgggtc
tttcccagagcaacagtgttgttaaccactgagcagtctcccaggcagcc
gctcttttttttttttttcttcagaagacagtttttattggtataggcct
aaggctagcctaaatttctcatctccttggctaaacctttcattactagg
ttatagttggtactacctaccacctcataggtggtaccttataaataaaa
tcacgtttaggctgg
attttcttaagggacttccagcccggggaacacacccacacagagctgtg
tgcaagcagataattggtagtgaatacattaaaggcaaaagcctattcat
gtgtcctgaaataagccaaagtctaccagggatgactggggagaagattt
taaaagacaagtaagagggcttcatagcacccagactctctgagggaggg
tgctggggatgacctgggattctcaggcatctcaccacagagctccatcc
agaagccacaaatacctagttgtttggttggttggttggttttttggttt
tttgagacagggtttttgttgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116036143_116037264
seq2: B6Ng01-151G23.b_44_1158

seq1  GAATTCATTCCTGTGGGCGAGTCAGGCTCAGTAGAAGCGGGGGCTTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTGTGGGCGAGTCAGGCTCAGTAGAAGCGGGGGCTTGGGA  50

seq1  GGGCTGTAGAGACAGGGGTGCCGCGTGCGTGTGCGGGGAGCTACCGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTAGAGACAGGGGTGCCGCGTGCGTGTGCGGGGAGCTACCGTGTC  100

seq1  AGCTGTAATTACAACTGCATGGGTAATTGGTGCTGTCTGGTGTTGTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAATTACAACTGCATGGGTAATTGGTGCTGTCTGGTGTTGTTAGC  150

seq1  CGAGTGCCAGTGGAACTGTGGGAACTCTTCTCCCCCACCGGGCGACACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCCAGTGGAACTGTGGGAACTCTTCTCCCCCACCGGGCGACACGG  200

seq1  AAACTACTGGTTTCTACCCTAGCAGAAAAGGAACAATGATCTCCAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTGGTTTCTACCCTAGCAGAAAAGGAACAATGATCTCCAAATGT  250

seq1  ATGCGCAAAATTCTAGGTTGCCTCACAGGAGTCTGCTGCTAATTAGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCAAAATTCTAGGTTGCCTCACAGGAGTCTGCTGCTAATTAGGGAT  300

seq1  TTGAAAAGTCTTTTGACTCACGAATCACAACATCCTATTAATGAGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGTCTTTTGACTCACGAATCACAACATCCTATTAATGAGCTACA  350

seq1  ACTCTTAGTCACTTTGTGGCTTACATTTTTTTATAGTTAGCTTTTGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTCACTTTGTGGCTTACATTTTTTTATAGTTAGCTTTTGATTA  400

seq1  AGAGCGACGTTCCTATAGTTCAAAGACACGGTGGGAGGGAATCCGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGACGTTCCTATAGTTCAAAGACACGGTGGGAGGGAATCCGCACTG  450

seq1  AAATCTCACTGGGATTTGCTGCTCTGGGTCCTTGAAGTTACACATGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACTGGGATTTGCTGCTCTGGGTCCTTGAAGTTACACATGTGTA  500

seq1  GCCCTCCGTCCAAGCACAGCTGTGTGTCACCACCATGCTTCCCAGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCGTCCAAGCACAGCTGTGTGTCACCACCATGCTTCCCAGGCTGG  550

seq1  GAATCAGTCCCTTGTCCCCAGACTACAAGTCCAAGCCACTGACCCGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTCCCTTGTCCCCAGACTACAAGTCCAAGCCACTGACCCGCTCA  600

seq1  CCCAGCTTGCTTACACTTCTCCTCCCCTTCTCTTCTCTTCTTTTCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGCTTACACTTCTCCTCCCCTTCTCTTCTCTTCTTTTCTTTTA  650

seq1  TTTTTTTTGGTTTTTGAGACTGGGTTTCTCTGTGTAGCTTCAAAGCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGTTTTTGAGACTGGGTTTCTCTGTGTAGCTTCAAAGCTCCA  700

seq1  CCTGCCCCTGCCCCTGTCCCCTGAGTGCTGGGTTAAAAGTGTCATCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCTGCCCCTGTCCCCTGAGTGCTGGGTTAAAAGTGTCATCATCA  750

seq1  CCACTGCCCAGCTGTGTCTCTTTTTTTAAAGTTTATTTCGTGTGTGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCCAGCTGTGTCTCTTTTTTTAAAGTTTATTTCGTGTGTGAGTT  800

seq1  TTTGCTTTCATGTATGTCTGCACCTGGTACTCTTGCAGGGTCAGCTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCATGTATGTCTGCACCTGGTACTCTTGCAGGGTCAGCTGGAG  850

seq1  TTAGGGATGGATGTGAGCCACTGTGAGGGTATGGGAATCCAGCCTGGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATGGATGTGAGCCACTGTGAGGGTATGGGAATCCAGCCTGGGTC  900

seq1  TTTCCCAAGAGCAACAGGTGTTGTTAACCACTGAGCAGTCTCCCAGGCAG  950
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCCC-AGAGCAACA-GTGTTGTTAACCACTGAGCAGTCTCCCAGGCAG  948

seq1  CCGCTC-TTTTTTTTTTTTTCTTCAG-AGACAGTTTTTATT-GTATA-GC  996
      |||||| ||||||||||||||||||| |||||||||||||| ||||| ||
seq2  CCGCTCTTTTTTTTTTTTTTCTTCAGAAGACAGTTTTTATTGGTATAGGC  998

seq1  CT-AGGCTAGCCTTAAATTTCTCATCTCCTTGCTTAAACCTTTCAATTAC  1045
      || ||||||||| |||||||||||||||||||  |||||||||| |||||
seq2  CTAAGGCTAGCC-TAAATTTCTCATCTCCTTGGCTAAACCTTTC-ATTAC  1046

seq1  TAGGGTTATAGGTATGTACTACCTACCA-CTCATAGGTGGTAACTTTTAA  1094
      || ||||||| ||  ||||||||||||| ||||||||||||| |||   |
seq2  TA-GGTTATA-GTTGGTACTACCTACCACCTCATAGGTGGTACCTT---A  1091

seq1  TAATTAAAATCAGTGTTTATAGGGCTGG  1122
      ||| ||||||||  |||||   ||||||
seq2  TAAATAAAATCA-CGTTTA---GGCTGG  1115

seq1: chr5_116208245_116208570
seq2: B6Ng01-151G23.g_73_398 (reverse)

seq1  AACAACAACAAAAACCCTGTCTCAAAAAACCAAAAAACCAACCAACCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAAAACCCTGTCTCAAAAAACCAAAAAACCAACCAACCAAC  50

seq1  CAAACAACTAGGTATTTGTGGCTTCTGGATGGAGCTCTGTGGTGAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACTAGGTATTTGTGGCTTCTGGATGGAGCTCTGTGGTGAGATGC  100

seq1  CTGAGAATCCCAGGTCATCCCCAGCACCCTCCCTCAGAGAGTCTGGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATCCCAGGTCATCCCCAGCACCCTCCCTCAGAGAGTCTGGGTGC  150

seq1  TATGAAGCCCTCTTACTTGTCTTTTAAAATCTTCTCCCCAGTCATCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCCCTCTTACTTGTCTTTTAAAATCTTCTCCCCAGTCATCCCTG  200

seq1  GTAGACTTTGGCTTATTTCAGGACACATGAATAGGCTTTTGCCTTTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTTGGCTTATTTCAGGACACATGAATAGGCTTTTGCCTTTAATG  250

seq1  TATTCACTACCAATTATCTGCTTGCACACAGCTCTGTGTGGGTGTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTACCAATTATCTGCTTGCACACAGCTCTGTGTGGGTGTGTTCC  300

seq1  CCGGGCTGGAAGTCCCTTAAGAAAAT  326
      ||||||||||||||||||||||||||
seq2  CCGGGCTGGAAGTCCCTTAAGAAAAT  326