BAC Information

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BAC

Clone NameB6Ng01-151H18
Chromosome5 (Build37)
Map Location 60,377,791 - 60,506,963
singlet/doubletdoublet
Overlap geneLOC546866
Upstream geneLOC666499, EG625870, LOC100041425
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151H18.bB6Ng01-151H18.g
ACCDH947291DH947292
length1,2351,123
definitionDH947291|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H18, 5' end.DH947292|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,377,791 - 60,379,047)(60,505,833 - 60,506,963)
sequence
gaattccaaaacaggcacaacaatcagagacccactcattctcacagtca
aggggctcataaaaacactaaactaatagctatgatatatagctattata
gctatatatgcaccaccaggtggtgcagacccatgtcagacctgtgcttg
ctgcttcagtctctgtgagctcatatatgcctcgtttagttgattcagag
tgccttgttctcctggtgccttctatcccctctggctcttacaatatttg
gcctcttcttccacagggtttcctgagctctaagaggaagaatttgatgg
agacttcctttttatactctccatgtaatatctggctgtgggtctttgta
tatgtttctatttgctgcttggtgaagcttctctaacaatggtggagtaa
gtcactgtgctatacgtattgcagaaaatcattgggattaatttaattct
tacctttttctaggccagtcgtgtatggttcagcttctccaatctttatc
atcatttactcattttgttttcaccagaaattcctttaaaataatatgac
attaaaagcttccactcctaactctgaataattttcacagaaaatgtgaa
agcatgatttctctgtaaaccaatccttattttatgcttctttaagtatg
gttcttaaactaagaatgtttcatttcatgatttttttttcattcttaca
taattaaacaattcccaggacaatatttaataaggtaaaaattacaagaa
atttcagtgtcaataaataaataaggttagaagctagattttaagttttt
gaacatttatttttaattatgagagttggtgagtatatgcacagaagtgc
aggtacccaaaatgttccagagctattggatccctctggagttagagtta
tacatagttatgtgctgtctggtagtgtgctctggaaactgaaatcagat
cttttttaaagtagtatgtgctctatcattaagtcatttctggcttttgt
tgtagtcgtttgtttatgatagtttgttctattcaatttatttcagtatc
acctccaatatctccagttcatttccccatctcacttctcttttcttgag
agctttccactaggtaatacccagtacttccgttcagagatatcctccac
tgctgcgaacctagtacatccctttctctaagaacctatgaaggtacgga
tccaaggtaggtagagaacctctattcatggacag
gaattctaactgtacacatcagaaatctgtttctgtgtgctttatcttgg
catgggatataacaaatataaaaatggaatttatcttacaattgaagtaa
tgctaggttgggtgaaatacttctgtatatagaatatagcaaattatttt
ctcttgcatggataaatcgtcacttttcactctagttttaactgataaat
aatttggccaaaagctgaagtgaaaattataattaaaatttaacctgtaa
cttatctaaaaatgtttctcactttctataagatttgtttcaattttaag
ttgaagtgtgtgtctgtgtgagcttctgtttgtctatgtgtgtgtatttc
cagtaatgagtgtgtgtcaaggaaacagaagagggcattgtagcccccag
agatatattcacaaaccttggcaggaagccagtcgcttatgtacataagc
tctcttcagattctgttattgcacaacaagcattcaattgctgagttatc
tcttcaacctcaagaatatattttttgataagaggttgacttttatttct
gtgattaaaatcatagccaaaagcatcctgggaaggatggggtttatatc
actaacacttccaaataactgttgatcatcaaaaacagtagaagcaggaa
ctcaagcagggcagaaactcaagcagggcaggaacatggaggcagaagct
gattcagaggatgcaggagtgctactatttgacttttcctcatgacttcc
ttagcctgttctcttacagaatccaggacctccaacctagaaatggcaat
acctaaactgaactaaactgctggcctctagtgccccattcaatttttca
gtcctgttaagaaaatgatctactggtctgactaccgtatatctaacctt
atgaatgattttctccattgaaatctctactctcagatgactctagcttg
aggtagttgacattaaactaaccacacagtgttcgatgggcagcaaagct
ttcagtcaacttgagttacaaatggctcagatgtgactgaaagccaactc
tagatataacaagaaacatgtctgcacaccaaattctttactggcaatat
ttctgcaaatattcccagtagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60377791_60379047
seq2: B6Ng01-151H18.b_46_1280

seq1  GAATTCCAAAACAGGCACAACAATCAGAGACCCACTCATTCTCACAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACAGGCACAACAATCAGAGACCCACTCATTCTCACAGTCA  50

seq1  AGGGGCTCATAAAAACACTAAACTAATAGCTATGATATATAGCTATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTCATAAAAACACTAAACTAATAGCTATGATATATAGCTATTATA  100

seq1  GCTATATATGCACCACCAGGTGGTGCAGACCCATGTCAGACCTGTGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATATGCACCACCAGGTGGTGCAGACCCATGTCAGACCTGTGCTTG  150

seq1  CTGCTTCAGTCTCTGTGAGCTCATATATGCCTCGTTTAGTTGATTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAGTCTCTGTGAGCTCATATATGCCTCGTTTAGTTGATTCAGAG  200

seq1  TGCCTTGTTCTCCTGGTGCCTTCTATCCCCTCTGGCTCTTACAATATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTTCTCCTGGTGCCTTCTATCCCCTCTGGCTCTTACAATATTTG  250

seq1  GCCTCTTCTTCCACAGGGTTTCCTGAGCTCTAAGAGGAAGAATTTGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTCTTCCACAGGGTTTCCTGAGCTCTAAGAGGAAGAATTTGATGG  300

seq1  AGACTTCCTTTTTATACTCTCCATGTAATATCTGGCTGTGGGTCTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCTTTTTATACTCTCCATGTAATATCTGGCTGTGGGTCTTTGTA  350

seq1  TATGTTTCTATTTGCTGCTTGGTGAAGCTTCTCTAACAATGGTGGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTATTTGCTGCTTGGTGAAGCTTCTCTAACAATGGTGGAGTAA  400

seq1  GTCACTGTGCTATACGTATTGCAGAAAATCATTGGGATTAATTTAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGCTATACGTATTGCAGAAAATCATTGGGATTAATTTAATTCT  450

seq1  TACCTTTTTCTAGGCCAGTCGTGTATGGTTCAGCTTCTCCAATCTTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTTCTAGGCCAGTCGTGTATGGTTCAGCTTCTCCAATCTTTATC  500

seq1  ATCATTTACTCATTTTGTTTTCACCAGAAATTCCTTTAAAATAATATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTACTCATTTTGTTTTCACCAGAAATTCCTTTAAAATAATATGAC  550

seq1  ATTAAAAGCTTCCACTCCTAACTCTGAATAATTTTCACAGAAAATGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCTTCCACTCCTAACTCTGAATAATTTTCACAGAAAATGTGAA  600

seq1  AGCATGATTTCTCTGTAAACCAATCCTTATTTTATGCTTCTTTAAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATTTCTCTGTAAACCAATCCTTATTTTATGCTTCTTTAAGTATG  650

seq1  GTTCTTAAACTAAGAATGTTTCATTTCATGATTTTTTTTTCATTCTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAAACTAAGAATGTTTCATTTCATGATTTTTTTTTCATTCTTACA  700

seq1  TAATTAAACAATTCCCAGGACAATATTTAATAAGGTAAAAATTACAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAACAATTCCCAGGACAATATTTAATAAGGTAAAAATTACAAGAA  750

seq1  ATTTCAGTGTCAATAAATAAATAAGGTTAGAAGCTAGATTTTAAGTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTGTCAATAAATAAATAAGGTTAGAAGCTAGATTTTAAGTTTTT  800

seq1  GAACATTTATTTTTAATTATGAGAGTTGGTGAGTATATGCACAGAAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTATTTTTAATTATGAGAGTTGGTGAGTATATGCACAGAAGTGC  850

seq1  AGGTACCCAAAATGTTCCAGAGCTATTGGATCCCTCTGGAGTTAGAGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCCAAAATGTTCCAGAGCTATTGGATCCCTCTGGAGTTAGAGTTA  900

seq1  TACATAGTTATGTGCTGTCTGGTAGTGTGCTCTGGAAACTGAAATCAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACATAGTTATGTGCTGTCTGGTAGTGTGCTCTGGAAACTGAAATCA-GA  949

seq1  TCTTTTTTAAAGTAGTATGTGCTCTTAATCATTAAGTCATTTCTGGCTTT  1000
      |||||||||||||||||||||||||  |||||||||||||||||||| ||
seq2  TCTTTTTTAAAGTAGTATGTGCTCT--ATCATTAAGTCATTTCTGGC-TT  996

seq1  TTGTTGTAGTTCGTTTGTTTATGATTAGTTTGTTCTATTCAATTTATTTC  1050
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  TTGTTGTAG-TCGTTTGTTTATGA-TAGTTTGTTCTATTCAATTTATTTC  1044

seq1  AAGTATCACCTCCAATATCCTCCCAGTTCCAATATCCCCCATTCCTCACT  1100
       ||||||||||||||||||   |||||||  || | ||||||  ||||||
seq2  -AGTATCACCTCCAATATC--TCCAGTTC--AT-TTCCCCAT--CTCACT  1086

seq1  TCTCTTTTCTTGAGAGCTTTCCACTAGGTAAAATACCCCAGTACTTCCCC  1150
      ||||||||||||||||||||||||||||||| |   ||||||||||  ||
seq2  TCTCTTTTCTTGAGAGCTTTCCACTAGGTAATA---CCCAGTACTT--CC  1131

seq1  TTTCAG-GATA-CCTCACACTGCTGCAGACTAGGTACATCCTTTCCTACA  1198
       ||||| |||| |||| |||||||||  ||   |||||||| || ||  |
seq2  GTTCAGAGATATCCTC-CACTGCTGCGAACCTAGTACATCCCTTTCTCTA  1180

seq1  AGGCACCCTCTATGAAGGTACGGGATCCACAGGTAGGTAGAGAAC--CTA  1246
      ||  | |  |||||||||||| ||||||| |||||||||||||||  |||
seq2  AG--AAC--CTATGAAGGTAC-GGATCCA-AGGTAGGTAGAGAACCTCTA  1224

seq1  TTCAGGGACAG  1257
      |||| ||||||
seq2  TTCATGGACAG  1235

seq1: chr5_60505833_60506963
seq2: B6Ng01-151H18.g_69_1191 (reverse)

seq1  TGCTACTGGGAAATATTTGCAGAAAATATTG-CAGT-AAGAA-TTGGTGT  47
      |||||||||| ||||||||||| |||||||| |||| ||||| |||||||
seq2  TGCTACTGGG-AATATTTGCAG-AAATATTGCCAGTAAAGAATTTGGTGT  48

seq1  GCAGACATTGTTTCTTTGGTTATATCTTAGAGTTTGCCTTTCAGTCACAT  97
      ||||||| ||||||||  |||||||| ||||| ||| |||||||||||||
seq2  GCAGACA-TGTTTCTT--GTTATATC-TAGAG-TTGGCTTTCAGTCACAT  93

seq1  CTGAGCCATTTGTAACTCAAGTTTGACTGAAAGCTTTGCTGCCCATCGAA  147
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGAGCCATTTGTAACTCAAG-TTGACTGAAAGCTTTGCTGCCCATCGAA  142

seq1  CACTGTGTTGGTTAGTTTAATGTCAACTTACCTCAAGCTAGAGTCATCTG  197
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  CACTGTG-TGGTTAGTTTAATGTCAAC-TACCTCAAGCTAGAGTCATCTG  190

seq1  AGAGTAGAGATTTTCAATGGAGAAAATCATTCATAAGGTTAGATATACGG  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAGA-TTTCAATGGAGAAAATCATTCATAAGGTTAGATATACGG  239

seq1  TAGTCAGACCAGTAGATCATTTTCTTAACAGGACTGAAAAATTGAATGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGACCAGTAGATCATTTTCTTAACAGGACTGAAAAATTGAATGGG  289

seq1  GCACTAGAGGCCAGCAGTTTAGTTCAGTTTAGGTATTGCCATTTCTAGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGAGGCCAGCAGTTTAGTTCAGTTTAGGTATTGCCATTTCTAGGT  339

seq1  TGGAGGTCCTGGATTCTGTAAGAGAACAGGCTAAGGAAGTCATGAGGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCCTGGATTCTGTAAGAGAACAGGCTAAGGAAGTCATGAGGAAA  389

seq1  AGTCAAATAGTAGCACTCCTGCATCCTCTGAATCAGCTTCTGCCTCCATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATAGTAGCACTCCTGCATCCTCTGAATCAGCTTCTGCCTCCATG  439

seq1  TTCCTGCCCTGCTTGAGTTTCTGCCCTGCTTGAGTTCCTGCTTCTACTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCTGCTTGAGTTTCTGCCCTGCTTGAGTTCCTGCTTCTACTGT  489

seq1  TTTTGATGATCAACAGTTATTTGGAAGTGTTAGTGATATAAACCCCATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGATCAACAGTTATTTGGAAGTGTTAGTGATATAAACCCCATCC  539

seq1  TTCCCAGGATGCTTTTGGCTATGATTTTAATCACAGAAATAAAAGTCAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGATGCTTTTGGCTATGATTTTAATCACAGAAATAAAAGTCAAC  589

seq1  CTCTTATCAAAAAATATATTCTTGAGGTTGAAGAGATAACTCAGCAATTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCAAAAAATATATTCTTGAGGTTGAAGAGATAACTCAGCAATTG  639

seq1  AATGCTTGTTGTGCAATAACAGAATCTGAAGAGAGCTTATGTACATAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGTTGTGCAATAACAGAATCTGAAGAGAGCTTATGTACATAAGC  689

seq1  GACTGGCTTCCTGCCAAGGTTTGTGAATATATCTCTGGGGGCTACAATGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTTCCTGCCAAGGTTTGTGAATATATCTCTGGGGGCTACAATGC  739

seq1  CCTCTTCTGTTTCCTTGACACACACTCATTACTGGAAATACACACACATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGTTTCCTTGACACACACTCATTACTGGAAATACACACACATA  789

seq1  GACAAACAGAAGCTCACACAGACACACACTTCAACTTAAAATTGAAACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAGAAGCTCACACAGACACACACTTCAACTTAAAATTGAAACAA  839

seq1  ATCTTATAGAAAGTGAGAAACATTTTTAGATAAGTTACAGGTTAAATTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAGAAAGTGAGAAACATTTTTAGATAAGTTACAGGTTAAATTTT  889

seq1  AATTATAATTTTCACTTCAGCTTTTGGCCAAATTATTTATCAGTTAAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATTTTCACTTCAGCTTTTGGCCAAATTATTTATCAGTTAAAAC  939

seq1  TAGAGTGAAAAGTGACGATTTATCCATGCAAGAGAAAATAATTTGCTATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAAAAGTGACGATTTATCCATGCAAGAGAAAATAATTTGCTATA  989

seq1  TTCTATATACAGAAGTATTTCACCCAACCTAGCATTACTTCAATTGTAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATACAGAAGTATTTCACCCAACCTAGCATTACTTCAATTGTAAG  1039

seq1  ATAAATTCCATTTTTATATTTGTTATATCCCATGCCAAGATAAAGCACAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCCATTTTTATATTTGTTATATCCCATGCCAAGATAAAGCACAC  1089

seq1  AGAAACAGATTTCTGATGTGTACAGTTAGAATTC  1131
      ||||||||||||||||||||||||||||||||||
seq2  AGAAACAGATTTCTGATGTGTACAGTTAGAATTC  1123