BAC Information

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BAC

Clone NameB6Ng01-151M06
Chromosome5 (Build37)
Map Location 100,942,896 - 101,086,406
singlet/doubletdoublet
Overlap geneCops4, Plac8, Coq2
Upstream geneA930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54
Downstream geneHpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151M06.bB6Ng01-151M06.g
ACCDH947503DH947504
length1,2151,122
definitionDH947503|Mus musculus domesticus DNA, BAC clone: B6Ng01-151M06, 5' end.DH947504|Mus musculus domesticus DNA, BAC clone: B6Ng01-151M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,942,896 - 100,944,110)(101,085,280 - 101,086,406)
sequence
gaattctctagccattcttctcggcactgttcagggactgaaccacctcc
cccctccccctccacccctttgcccagtgacatggccgtgtgcctgctgc
tcttctggaagtctcttgggagttttccggatgatcagatctgctatcgc
tgttcttaccttcaggcaatctttattgtgtttactcatacatagagtgc
aaagggcagccatgctgcccatcctgacacgcccaagaggggttgattac
atgaaaagtgaggtcccaagaaggagcaaaaatcaatcccatggagttta
ctaagctccatagtaaatcagaaaccttgagagtgttgctgtggttgttc
ttttataccagtgtgtgaatgtgcacttctccatgcgtgcacacacggac
agctttcctacatctgtctccacactattttcacggaactggacacttgc
tctttcagctagactggttggccagtgagccctcagaacctacttgtcat
ttatacgggtaccagacacccaaactcctccttctctttacgcactgaac
tatctcccccaccctgcatgctgtattttaacaattgcttttgaaagact
tagtatttttatttcatgtgtatgtgtgtctgcttgagtgcattgctgtg
tgtgtgcactccttctgtgggggagcccagcaggccagaggatggtatcg
aattccctggacgaagaggttcaggaagttgtgagctaccatatggatgc
tggaaatttgaacccaggtcctcagcaagagcagcaagtgctcttaacca
ccaagccatctctccagtccctcaagaggctttgtgttgttttgtttttt
gaacattctgaattttgagctgatgtaaaggtgtcaaataaaattacggg
agcccattgcttcagaccaagctctcattctgctctgaaagaccagacta
taattgttaactggtatgactcatgttaacttaataccattcaagctatt
tatttcactttcagagagcaagatgaaagaggcttttttttttctcaaag
aagctgtttcatggagcagcacactgattgaagttctttggtgcttcata
ctttcaattcaacccaaccaatctatctaaccgagccaatatcagagtga
aacaaattcctatttaccttaaggtagcaatagttttttgtttcttactg
aacaagaaaagaact
gaattcattagttcaaaaacaatctgataaacctataataattaataata
ataataataaggccagacagatgaaggtgcttgccaccaagtctgatggc
ctgagtttgatccccaggaccttctcttgtgttgacctctgacaagtgca
catgagtgtcccttgtgtggggaccactgccagccagagaaaacacagcc
ctggaaacctgcagccccaacagctcaaaaagcaagccagccgaggcacc
ttagtgaaacctgctctcaaaaggaaagccgaggggtcagtgttaaggag
ttaggcagcttgcctagcatgggggcagcccagggttcaaggaaaacaaa
actgtcctcaggatgttcacccaggcttctagggagcctgcatagagagc
ctatgaaacagtgagccagatctaaggtgagctgcaccagtgttgtcgag
ctttctttgactagagtaaggaggcactcacgagcccgatgatgtgttta
cagcttcagtgcaggcaagactgcaatgacacggaccacagaaactagtc
agatacacagcacgcctgctccatggcctcgcttcaaacactgggattct
tcagtgttttcctcttgagacagacgcaaccccttgctgagagctgagaa
ctcggcactacaaagcccatattcatgaattaattgtctggtgtaaagag
aagtattcactaaagtgttaggtcgcaaggagggaaatgctcaagcatct
gcaagtattgcgaaatgcatgtggcccaagagatagtgtaaatggcatct
gcggtcctcagacactgtttcaattttcctttttgttaaagatagtctct
agatgtagccctggctgcgctgaaattctgctatgtaagaggaatcccca
ttttcatctgctgacgtctaatagaaaagtgagagttcaggccagccaga
catgagcatactgtgctcatatcctagccctagggatgctgaagcaagag
gatctagaattcaggccagcttcagctacacagtgagacctgttccaaga
aggaagggaagttaaatgaggccgtgttgtttatctgcagggctggggtg
ggggaaaagacctgtctgacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_100942896_100944110
seq2: B6Ng01-151M06.b_43_1257

seq1  GAATTCTCTAGCCATTCTTCTCGGCACTGTTCAGGGACTGAACCACCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGCCATTCTTCTCGGCACTGTTCAGGGACTGAACCACCTCC  50

seq1  CCCCTCCCCCTCCACCCCTTTGCCCAGTGACATGGCCGTGTGCCTGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCTCCACCCCTTTGCCCAGTGACATGGCCGTGTGCCTGCTGC  100

seq1  TCTTCTGGAAGTCTCTTGGGAGTTTTCCGGATGATCAGATCTGCTATCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGAAGTCTCTTGGGAGTTTTCCGGATGATCAGATCTGCTATCGC  150

seq1  TGTTCTTACCTTCAGGCAATCTTTATTGTGTTTACTCATACATAGAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTACCTTCAGGCAATCTTTATTGTGTTTACTCATACATAGAGTGC  200

seq1  AAAGGGCAGCCATGCTGCCCATCCTGACACGCCCAAGAGGGGTTGATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAGCCATGCTGCCCATCCTGACACGCCCAAGAGGGGTTGATTAC  250

seq1  ATGAAAAGTGAGGTCCCAAGAAGGAGCAAAAATCAATCCCATGGAGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGTGAGGTCCCAAGAAGGAGCAAAAATCAATCCCATGGAGTTTA  300

seq1  CTAAGCTCCATAGTAAATCAGAAACCTTGAGAGTGTTGCTGTGGTTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCCATAGTAAATCAGAAACCTTGAGAGTGTTGCTGTGGTTGTTC  350

seq1  TTTTATACCAGTGTGTGAATGTGCACTTCTCCATGCGTGCACACACGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACCAGTGTGTGAATGTGCACTTCTCCATGCGTGCACACACGGAC  400

seq1  AGCTTTCCTACATCTGTCTCCACACTATTTTCACGGAACTGGACACTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCTACATCTGTCTCCACACTATTTTCACGGAACTGGACACTTGC  450

seq1  TCTTTCAGCTAGACTGGTTGGCCAGTGAGCCCTCAGAACCTACTTGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGCTAGACTGGTTGGCCAGTGAGCCCTCAGAACCTACTTGTCAT  500

seq1  TTATACGGGTACCAGACACCCAAACTCCTCCTTCTCTTTACGCACTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACGGGTACCAGACACCCAAACTCCTCCTTCTCTTTACGCACTGAAC  550

seq1  TATCTCCCCCACCCTGCATGCTGTATTTTAACAATTGCTTTTGAAAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCCCACCCTGCATGCTGTATTTTAACAATTGCTTTTGAAAGACT  600

seq1  TAGTATTTTTATTTCATGTGTATGTGTGTCTGCTTGAGTGCATTGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTTTATTTCATGTGTATGTGTGTCTGCTTGAGTGCATTGCTGTG  650

seq1  TGTGTGCACTCCTTCTGTGGGGGAGCCCAGCAGGCCAGAGGATGGTATCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACTCCTTCTGTGGGGGAGCCCAGCAGGCCAGAGGATGGTATCG  700

seq1  AATTCCCTGGACGAAGAGGTTCAGGAAGTTGTGAGCTACCATATGGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTGGACGAAGAGGTTCAGGAAGTTGTGAGCTACCATATGGATGC  750

seq1  TGGAAA-TTGAACCCAGGTCCTCAGCAAGAGCAGCAAGTGCTCTTAACCA  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTTGAACCCAGGTCCTCAGCAAGAGCAGCAAGTGCTCTTAACCA  800

seq1  CCAAGCCATCTCTCCAGTCCCTCAAGAGGCTTTGTGTTGTTTTG-TTTTT  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAAGCCATCTCTCCAGTCCCTCAAGAGGCTTTGTGTTGTTTTGTTTTTT  850

seq1  GAACATTCTGAATTTTGAGCTGATGTAAAGGTGTCAAATAAAATTACGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCTGAATTTTGAGCTGATGTAAAGGTGTCAAATAAAATTACGGG  900

seq1  AGCCCATTGCTTCAGACCAAGCTCTCACTCCTGCCCTGAAAGACCAGACT  948
      ||||||||||||||||||||||||||| | |||| |||||||||||||||
seq2  AGCCCATTGCTTCAGACCAAGCTCTCA-TTCTGCTCTGAAAGACCAGACT  949

seq1  ATAATTGTAAACTGGTATGACTCATGGTAACTT-ATACCA-TCAAGCTAT  996
      |||||||| ||||||||||||||||| |||||| |||||| |||||||||
seq2  ATAATTGTTAACTGGTATGACTCATGTTAACTTAATACCATTCAAGCTAT  999

seq1  TTATTTCACCTTCAGAGAAGCAAAGATGAAAGAGGC-TTTTTTTTTCCCA  1045
      ||||||||| ||||||| ||| |||||||||||||| |||||||||| ||
seq2  TTATTTCACTTTCAGAG-AGC-AAGATGAAAGAGGCTTTTTTTTTTCTCA  1047

seq1  AAGAAGCTGTTTCAGTGAGCAGCACACTGA-TGAAGTTCCTTTGGTGCTT  1094
      ||||||||||||||  |||||||||||||| ||||||| |||||||||||
seq2  AAGAAGCTGTTTCATGGAGCAGCACACTGATTGAAGTT-CTTTGGTGCTT  1096

seq1  CATACTTTCAAAATCAA-CCAACCAA-CCAACCAAACAAACAAAAAACAA  1142
      ||||||||| || |||| |||||||| | | | || | | | || | || 
seq2  CATACTTTC-AATTCAACCCAACCAATCTATCTAACCGAGCCAATATCAG  1145

seq1  GATGAAACAAAATCCCAAATTAACCTAAAGTAACCAAATTAGTTTTTTG-  1191
        ||||||||| |||   ||| |||| |||  | |||  |||||||||| 
seq2  AGTGAAACAAATTCC--TATTTACCTTAAGGTAGCAA--TAGTTTTTTGT  1191

seq1  TTCTATCTGACAAAGAAAAGAACT  1215
      ||||  ||||  ||||||||||||
seq2  TTCTTACTGAACAAGAAAAGAACT  1215

seq1: chr5_101085280_101086406
seq2: B6Ng01-151M06.g_69_1190 (reverse)

seq1  AGGTCAGACAGTTCTTTT-CCCCACACCAGCCCTGCAGATAAACCAACAC  49
      ||||||||||| |||||| |||||| ||||||||||||||||| ||||||
seq2  AGGTCAGACAGGTCTTTTCCCCCACCCCAGCCCTGCAGATAAA-CAACAC  49

seq1  GGCCTCATTTAACTTCCCTTCCTTCTTGGACAGGGTCTCACTGTGTAGCT  99
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  GGCCTCATTTAACTTCCCTTCCTTCTTGGAACAGGTCTCACTGTGTAGCT  99

seq1  GAGGCTGGCCCTGAATTCTAGATCCTCTTGCTTCAGCATCCCTAGGGCTA  149
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGG-CCTGAATTCTAGATCCTCTTGCTTCAGCATCCCTAGGGCTA  148

seq1  GGATATGAGCACAGTATGCCTCATGTCTGGCTGGCCTGAACTCTCACTTT  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGATATGAGCACAGTATG-CTCATGTCTGGCTGGCCTGAACTCTCACTTT  197

seq1  TCTATTAAGACGTCAGCAGATGAAAATGGGGATTTCCTCTTACATAGCAG  249
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTATT-AGACGTCAGCAGATGAAAATGGGGA-TTCCTCTTACATAGCAG  245

seq1  AATTTCAGCGCAGCCAGGGCTACATCTAGAGACTATCTTTAACAAAAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGCGCAGCCAGGGCTACATCTAGAGACTATCTTTAACAAAAAGG  295

seq1  GAAATTGAAACAGTGTCCTGAGGACCGCAGATGCCATTTACACTATCTCT  349
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAATTGAAACAGTGT-CTGAGGACCGCAGATGCCATTTACACTATCTCT  344

seq1  TGGGCCACATGCATTTCGCAATACTTGCAGATGCTTGAGCATTTCCCTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACATGCATTTCGCAATACTTGCAGATGCTTGAGCATTTCCCTCC  394

seq1  TTGCGACCTAACACTTTAGTGAATACTTCTCTTTACACCAGACAATTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGACCTAACACTTTAGTGAATACTTCTCTTTACACCAGACAATTAAT  444

seq1  TCATGAATATGGGCTTTGTAGTGCCGAGTTCTCAGCTCTCAGCAAGGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATATGGGCTTTGTAGTGCCGAGTTCTCAGCTCTCAGCAAGGGGT  494

seq1  TGCGTCTGTCTCAAGAGGAAAACACTGAAGAATCCCAGTGTTTGAAGCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTGTCTCAAGAGGAAAACACTGAAGAATCCCAGTGTTTGAAGCGA  544

seq1  GGCCATGGAGCAGGCGTGCTGTGTATCTGACTAGTTTCTGTGGTCCGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGAGCAGGCGTGCTGTGTATCTGACTAGTTTCTGTGGTCCGTGT  594

seq1  CATTGCAGTCTTGCCTGCACTGAAGCTGTAAACACATCATCGGGCTCGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGTCTTGCCTGCACTGAAGCTGTAAACACATCATCGGGCTCGTG  644

seq1  AGTGCCTCCTTACTCTAGTCAAAGAAAGCTCGACAACACTGGTGCAGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTCCTTACTCTAGTCAAAGAAAGCTCGACAACACTGGTGCAGCTC  694

seq1  ACCTTAGATCTGGCTCACTGTTTCATAGGCTCTCTATGCAGGCTCCCTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGATCTGGCTCACTGTTTCATAGGCTCTCTATGCAGGCTCCCTAG  744

seq1  AAGCCTGGGTGAACATCCTGAGGACAGTTTTGTTTTCCTTGAACCCTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGGTGAACATCCTGAGGACAGTTTTGTTTTCCTTGAACCCTGGG  794

seq1  CTGCCCCCATGCTAGGCAAGCTGCCTAACTCCTTAACACTGACCCCTCGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCATGCTAGGCAAGCTGCCTAACTCCTTAACACTGACCCCTCGG  844

seq1  CTTTCCTTTTGAGAGCAGGTTTCACTAAGGTGCCTCGGCTGGCTTGCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTGAGAGCAGGTTTCACTAAGGTGCCTCGGCTGGCTTGCTTT  894

seq1  TTGAGCTGTTGGGGCTGCAGGTTTCCAGGGCTGTGTTTTCTCTGGCTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGTTGGGGCTGCAGGTTTCCAGGGCTGTGTTTTCTCTGGCTGGC  944

seq1  AGTGGTCCCCACACAAGGGACACTCATGTGCACTTGTCAGAGGTCAACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCCCCACACAAGGGACACTCATGTGCACTTGTCAGAGGTCAACAC  994

seq1  AAGAGAAGGTCCTGGGGATCAAACTCAGGCCATCAGACTTGGTGGCAAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGTCCTGGGGATCAAACTCAGGCCATCAGACTTGGTGGCAAGC  1044

seq1  ACCTTCATCTGTCTGGCCTTATTATTATTATTATTAATTATTATAGGTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATCTGTCTGGCCTTATTATTATTATTATTAATTATTATAGGTTT  1094

seq1  ATCAGATTGTTTTTGAACTAATGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  ATCAGATTGTTTTTGAACTAATGAATTC  1122