BAC Information

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BAC

Clone NameB6Ng01-152B13
Chromosome5 (Build37)
Map Location 86,192,529 - 86,193,714
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152B13.bB6Ng01-152B13.g
ACCDH947755DH947756
length1,1871,190
definitionDH947755|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B13, 5' end.DH947756|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttgtcatggcattactagtatagtacatcccaatagatgtc
tttgtgtcacctgtaggttgcattttagtgacaccacattgcacacagaa
gaatctcctcacttaagaataaacaccatccatcgtcagttgatttgtac
tctgctcctcacagtttgtcaactgagccatgatacaaatgttaacttgc
ccttgctctctaattttattccacctttcatgaaaatcaccttatctagt
taaaattgtcaattatctatataaaaactccaccaatacttttagaacat
ctttagaaaaagtctgtaatttgtaataacaagtacagagttttcctcaa
gagacttatcatccatcattagctgaactagagtcatcatctctgaacca
tggagaggatttggaaagttctagagaacaccaaaaacttagaggaaaaa
aaacagaaaggcaaagagaaaatggaatgaaccatttgagtggtgagagt
gaaagtgataaatgcatacccattcctgattccacccgaggaaaaactcc
attaaacttaaatactttccaatggatgtaaatcaaaacgcttgtagcag
gtcccttcttcttcttcttcaccaatccctcaaaatgtcataaccaaatg
aaagtcaggtggcagggagatagagatggaatttaaaaataaataatctg
agactgtttgtgtcttatactgatagcaaactatatataatcatgggtct
taattagttatatactgaataaataaaaaatgagttgtaatattgccaag
caaggaactagactataaaatctgagctcacatggttcatgctattttct
ctttgcctttctggtttgtttggctggttggctagttgggttccttgttt
gtttgtgaatttgttctctaaattttttaggtcttctctggatcctttca
aatcttcaccattgttcagagatgatgattctcagtcagctattgataga
tgctaagtctcttgtaattttctgcagttacaagtgcgatcagaaagaat
cactgtaaattttggcttttatttcatcagatgtaaggatgaagataaga
agccaactatccaagctatcctagaatatatgggttgggcggagctcaaa
gacattctttcctggtccagttattccagagacctaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgtttgtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaaccaaatcacaaag
gaactcgaacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aagaatgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgtgacga
aaggatggaccatctagtgatttccatatgcagagatccatcccataatc
agcttctaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctctctcttgtgagaatatgccggggcccagcaaac
acagaagtggatgatcacagtcagctattggatgggtcacacggccccca
tgaggagctagagaaagtacccaaggaactaaagggaactgcaccctata
gtggactcattatgaactaaccagtacccgggagctttttgtctttagct
gcatatggtatcaatgaatggcctagtttggccatcatttccaagaagag
gcccaattgacctgcaaaccttaatatgctcataccagggtaacgctctg
gcccaaaaaggggggaatgtgcgtgggctagtggcataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86192529_86193714
seq2: B6Ng01-152B13.b_46_1232

seq1  GAATTCACTTTGTCATGGCATTACTAGTATAGTACATCCCAATAGATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTCATGGCATTACTAGTATAGTACATCCCAATAGATGTC  50

seq1  TTTGTGTCACCTGTAGGTTGCATTTTAGTGACACCACATTGCACACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCACCTGTAGGTTGCATTTTAGTGACACCACATTGCACACAGAA  100

seq1  GAATCTCCTCACTTAAGAATAAACACCATCCATCGTCAGTTGATTTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCCTCACTTAAGAATAAACACCATCCATCGTCAGTTGATTTGTAC  150

seq1  TCTGCTCCTCACAGTTTGTCAACTGAGCCATGATACAAATGTTAACTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCTCACAGTTTGTCAACTGAGCCATGATACAAATGTTAACTTGC  200

seq1  CCTTGCTCTCTAATTTTATTCCACCTTTCATGAAAATCACCTTATCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTCTCTAATTTTATTCCACCTTTCATGAAAATCACCTTATCTAGT  250

seq1  TAAAATTGTCAATTATCTATATAAAAACTCCACCAATACTTTTAGAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGTCAATTATCTATATAAAAACTCCACCAATACTTTTAGAACAT  300

seq1  CTTTAGAAAAAGTCTGTAATTTGTAATAACAAGTACAGAGTTTTCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAAAGTCTGTAATTTGTAATAACAAGTACAGAGTTTTCCTCAA  350

seq1  GAGACTTATCATCCATCATTAGCTGAACTAGAGTCATCATCTCTGAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTATCATCCATCATTAGCTGAACTAGAGTCATCATCTCTGAACCA  400

seq1  TGGAGAGGATTTGGAAAGTTCTAGAGAACACCAAAAACTTAGAGGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGATTTGGAAAGTTCTAGAGAACACCAAAAACTTAGAGGAAAAA  450

seq1  AAACAGAAAGGCAAAGAGAAAATGGAATGAACCATTTGAGTGGTGAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAGGCAAAGAGAAAATGGAATGAACCATTTGAGTGGTGAGAGT  500

seq1  GAAAGTGATAAATGCATACCCATTCCTGATTCCACCCGAGGAAAAACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGATAAATGCATACCCATTCCTGATTCCACCCGAGGAAAAACTCC  550

seq1  ATTAAACTTAAATACTTTCCAATGGATGTAAATCAAAACGCTTGTAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTTAAATACTTTCCAATGGATGTAAATCAAAACGCTTGTAGCAG  600

seq1  GTCCCTTCTTCTTCTTCTTCACCAATCCCTCAAAATGTCATAACCAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCTTCTTCTTCTTCACCAATCCCTCAAAATGTCATAACCAAATG  650

seq1  AAAGTCAGGTGGCAGGGAGATAGAGATGGAATTTAAAAATAAATAATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGTGGCAGGGAGATAGAGATGGAATTTAAAAATAAATAATCTG  700

seq1  AGACTGTTTGTGTCTTATACTGATAGCAAACTATATATAATCATGGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTTGTGTCTTATACTGATAGCAAACTATATATAATCATGGGTCT  750

seq1  TAATTAGTTATATACTGAATAAATAAAAAATGAGTTGTAATATTGCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTTATATACTGAATAAATAAAAAATGAGTTGTAATATTGCCAAG  800

seq1  CAAGGAACTAGACTATAAAATCTGAGCTCACATGGTTCATGCTATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACTAGACTATAAAATCTGAGCTCACATGGTTCATGCTATTTTCT  850

seq1  CTTTGCCTTTCTGGTTTGTTTGGCTGGTTGGCTAGTTGGGTTCCTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTTTCTGGTTTGTTTGGCTGGTTGGCTAGTTGGGTTCCTTGTTT  900

seq1  GTTTGTGAATTTTGTTCTCTAAATTTTTTAGGTCTTCTCTGGATCCTTTC  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGAA-TTTGTTCTCTAAATTTTTTAGGTCTTCTCTGGATCCTTTC  949

seq1  AAATCTTCACCATTGTTCAGAGATGATGATTCTTCAGTTCAGCTAATGAT  1000
      |||||||||||||||||||||||||||||||| |||| ||||||| ||||
seq2  AAATCTTCACCATTGTTCAGAGATGATGATTC-TCAG-TCAGCTATTGAT  997

seq1  AGATGCTAAGTCTCTTGTAATTATCTGCAGTTACAAGTGCGATCAGAAAG  1050
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATGCTAAGTCTCTTGTAATTTTCTGCAGTTACAAGTGCGATCAGAAAG  1047

seq1  AATCACTGTAAATTTT-GCTTTTATTTCATCAGATGTAGGGATG-AGATA  1098
      |||||||||||||||| ||||||||||||||||||||| ||||| |||||
seq2  AATCACTGTAAATTTTGGCTTTTATTTCATCAGATGTAAGGATGAAGATA  1097

seq1  AG-AGCCAACATACCCAAGCTAT-CTAG-ATATATGGGTTGGGCTGAGCT  1145
      || ||||||| || ||||||||| |||| ||||||||||||||| |||||
seq2  AGAAGCCAAC-TATCCAAGCTATCCTAGAATATATGGGTTGGGCGGAGCT  1146

seq1  CAGAGCATTTCTTTCTCTGTTCTAGTTATTCCA-AGACCTAA  1186
      || ||   ||||||| ||| || |||||||||| ||||||||
seq2  CAAAGACATTCTTTC-CTGGTCCAGTTATTCCAGAGACCTAA  1187