BAC Information

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BAC

Clone NameB6Ng01-152C22
Chromosome5 (Build37)
Map Location 64,012,326 - 64,146,892
singlet/doubletdoublet
Overlap gene3110047P20Rik, LOC100042133
Upstream geneCentd1
Downstream gene0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152C22.bB6Ng01-152C22.g
ACCDH947819DH947820
length1,2551,062
definitionDH947819|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C22, 5' end.DH947820|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,012,326 - 64,013,586)(64,145,823 - 64,146,892)
sequence
gaattcagaggtcaaggcagtatttgaaaagagatgggtaagaataatga
agataataagtactcctagaatgactttcgtgttgaatttggggaaatgt
ctatttttcagtgacatcttcttactctcacaagaaagttcaaatacctc
tgtaaaacaaatccctggggaaaagacaaggaacaaacactttctatagt
tagtttcttacccaggcctctccacaaacccatccatctaaagttctacc
acagttttcctgctatgttgctttgctcagccaggaatggccttctccat
cctttgaaaccctcccccagacagagctagcttctcacaaaggcactgct
gatcctggacacaaacctccacagccctttgactgatttttcatgaccat
atagatggcaatcaatgtgtcaagggattaattgggtaacatcccataaa
tggagataaagtgtgctctgctgacatacccaacagcaaacaataaagtg
ttttatactttctgttatagtttgtatcttaaatgtaccccctagggtca
tacactgagacttagtcgccagtcaatgctattaatgaggataaagaaag
ttttagaggttaaagctcctacagggaaatcaagtcattaggggactgat
attgaagaggatattaggatatttctctctagttcctggatattatgagg
tgaacaacctccttatctattcatccacactcctgcatcatgaaagccta
gaagcacctagaccacaaccaaccttgtgatggaaatttcaaaactacta
tccccaaactatcatttccattttgtagctttatctcaaggacttgttag
aataacacaaagttgagttatactctctcctttttgcctaaggtacctat
gtcacagatttgtcccgagggagagttgagacagcaaagccaatgccaat
agtgttaccaccaatgaagagaaaaaaatcactgagctgagcataaactt
gatgaagcttatattgtatttcataaatctactcatgaattcacatgtaa
attggatgcttgttattaatcaggtgaatggctcaagggtctcacacaga
aagcatttttttgctctaagtacatcatccttagaacacagtcttagaag
aacatagggtcaaggctatcatggaccatattccgtctataggggctagg
actccactcttagttccaaggagagagaaccccattagagagacacatta
tctgc
gaattcttagtccccagtaggtggcactgtcaggaaagacttaggaggtg
tggccttgctgaaggaagtacgtcactgggagtgggctttgagagctcat
agcctcagcctccctactcttggttctctctttctgcttcttgtttgctg
ctggagggtgtgatctctgctgccttgcctgccacttcctgtaatgactt
cctgccataaatgactttatccctctggagcctaagcccaataaattctt
tcttctgtaaattgctttgatcatagggttttatcgggacaacagaaaaa
taaccaatacctggcaagtggcctgaagctgtgtttcttgcctcatgttc
caaagtgcaatgtattctgccctgatccagaaacgtctggcctctggaga
gttaatacctcctttcttccgttccacatctggactttgctctgaaactt
ttcagtgtcacagctaggactggttcctccagggaatcctctgaattagg
gagtcagaaatcattttatttatctccactttttattatagcattagtgt
aaaactgcatttttccaccaacttccttgcatgctccctcctcatttagc
cagtgcctaagaggacttaagtagtaaactcctgacttttcaatcagaga
acttggcagggtcttgtggcatgaccaactgcagtttttctagaatcgta
tatagatctcttgttggttgacttacttatattaaggagataccagggaa
gtactgggcgggggcgggggggggcatggcatagataaagaaatcttcac
tatgtttttgtaatttgagtttctggcagtatctagtacaggtttttgaa
gcttcggtttctctgtccaggtaatagatgggaatatccaagtttattat
gaaatgtatagttgacttagacaatcttaataaagccatgctcaacatag
cttcatttctactagagaaaggtatttttttttttcgatgactgatattt
tgtctgaatcatccattatctgggaaagaacctggaggcagccaggcagg
acgtggtgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64012326_64013586
seq2: B6Ng01-152C22.b_44_1298

seq1  GAATTCAGAGGTCAAGGCAGTATTTGAAAAGAGATGGGTAAGAATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGTCAAGGCAGTATTTGAAAAGAGATGGGTAAGAATAATGA  50

seq1  AGATAATAAGTACTCCTAGAATGACTTTCGTGTTGAATTTGGGGAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAAGTACTCCTAGAATGACTTTCGTGTTGAATTTGGGGAAATGT  100

seq1  CTATTTTTCAGTGACATCTTCTTACTCTCACAAGAAAGTTCAAATACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTCAGTGACATCTTCTTACTCTCACAAGAAAGTTCAAATACCTC  150

seq1  TGTAAAACAAATCCCTGGGGAAAAGACAAGGAACAAACACTTTCTATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACAAATCCCTGGGGAAAAGACAAGGAACAAACACTTTCTATAGT  200

seq1  TAGTTTCTTACCCAGGCCTCTCCACAAACCCATCCATCTAAAGTTCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTACCCAGGCCTCTCCACAAACCCATCCATCTAAAGTTCTACC  250

seq1  ACAGTTTTCCTGCTATGTTGCTTTGCTCAGCCAGGAATGGCCTTCTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCCTGCTATGTTGCTTTGCTCAGCCAGGAATGGCCTTCTCCAT  300

seq1  CCTTTGAAACCCTCCCCCAGACAGAGCTAGCTTCTCACAAAGGCACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAACCCTCCCCCAGACAGAGCTAGCTTCTCACAAAGGCACTGCT  350

seq1  GATCCTGGACACAAACCTCCACAGCCCTTTGACTGATTTTTCATGACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGACACAAACCTCCACAGCCCTTTGACTGATTTTTCATGACCAT  400

seq1  ATAGATGGCAATCAATGTGTCAAGGGATTAATTGGGTAACATCCCATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGCAATCAATGTGTCAAGGGATTAATTGGGTAACATCCCATAAA  450

seq1  TGGAGATAAAGTGTGCTCTGCTGACATACCCAACAGCAAACAATAAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAAAGTGTGCTCTGCTGACATACCCAACAGCAAACAATAAAGTG  500

seq1  TTTTATACTTTCTGTTATAGTTTGTATCTTAAATGTACCCCCTAGGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACTTTCTGTTATAGTTTGTATCTTAAATGTACCCCCTAGGGTCA  550

seq1  TACACTGAGACTTAGTCGCCAGTCAATGCTATTAATGAGGATAAAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAGACTTAGTCGCCAGTCAATGCTATTAATGAGGATAAAGAAAG  600

seq1  TTTTAGAGGTTAAAGCTCCTACAGGGAAATCAAGTCATTAGGGGACTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGGTTAAAGCTCCTACAGGGAAATCAAGTCATTAGGGGACTGAT  650

seq1  ATTGAAGAGGATATTAGGATATTTCTCTCTAGTTCCTGGATATTATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAGGATATTAGGATATTTCTCTCTAGTTCCTGGATATTATGAGG  700

seq1  TGAACAACCTCCTTATCTATACATCCACACTCCTGCATCATGAAAGCCTA  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAACAACCTCCTTATCTATTCATCCACACTCCTGCATCATGAAAGCCTA  750

seq1  GAAGCACCTAGACCACAACCAACCTTGTGATGGAAATTTCAAAACTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACCTAGACCACAACCAACCTTGTGATGGAAATTTCAAAACTACTA  800

seq1  TCCCCAAACTATCATTTCCA-TTTGTAGCTTTATCTCAAGGACTTGTTAG  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCCCAAACTATCATTTCCATTTTGTAGCTTTATCTCAAGGACTTGTTAG  850

seq1  AATAACACAAAGTTGAGTTATACTCTCTCCTTTTTGCCTAAGGTACCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACAAAGTTGAGTTATACTCTCTCCTTTTTGCCTAAGGTACCTAT  900

seq1  GTCACAGATTTGTCCCGAGGGAGAGTTGAGACAGCAAAGCCAATGCCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGATTTGTCCCGAGGGAGAGTTGAGACAGCAAAGCCAATGCCAAT  950

seq1  AGTGTTACCACCAATGAAGGAGAAAAAAAAATCACTGAGCTGAGCATAAA  999
      |||||||||||||||||   ||| ||||||||||||||||||||||||||
seq2  AGTGTTACCACCAATGA---AGAGAAAAAAATCACTGAGCTGAGCATAAA  997

seq1  C-TGATGAAGCTTATATTGTA-TTCAT-AATCTACTCATGAATTCACATG  1046
      | ||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  CTTGATGAAGCTTATATTGTATTTCATAAATCTACTCATGAATTCACATG  1047

seq1  TAAAATGGATGCTTGTTATTAATCA-GTGGATTGCTC-AGAGTCTTCACA  1094
      |||| |||||||||||||||||||| ||| || |||| || ||| |||||
seq2  TAAATTGGATGCTTGTTATTAATCAGGTGAATGGCTCAAGGGTC-TCACA  1096

seq1  CAGACAGCA-TTTTTTGCTCTAAGGTACATCATTCTTTAGACACAGTCCT  1143
      |||| |||| ||||||||||||| ||||||||| |||   ||||||| ||
seq2  CAGAAAGCATTTTTTTGCTCTAA-GTACATCATCCTTAGAACACAGT-CT  1144

seq1  AAGAAG-ACATA-GGTCAGTGCTAATCATTGGAACACATATTCCTTTCTT  1191
       ||||| ||||| |||||  ||| |||| ||||   ||||||||    | 
seq2  TAGAAGAACATAGGGTCAAGGCT-ATCA-TGGA--CCATATTCC---GTC  1187

seq1  TTTGTGGCCTAGGGGAATCTACATCTTAAATTCCAAAGAGAAAGAAACCC  1241
      | |  || |||  ||| || || |||| | |||||| |||| |||| |||
seq2  TATAGGGGCTA--GGACTCCAC-TCTT-AGTTCCAAGGAGAGAGAACCCC  1233

seq1  ATTAAAGAG--ACATTATCTGC  1261
      |||| ||||  |||||||||||
seq2  ATTAGAGAGACACATTATCTGC  1255

seq1: chr5_64145823_64146892
seq2: B6Ng01-152C22.g_68_1129 (reverse)

seq1  TTATCACACTGTCCTGTCCTGGCTGCCTCCATGGTTCTTTCCCAGATAAT  50
      |||||||   |||||| |||||||||||||| ||||||||||||||||| 
seq2  TTATCACCACGTCCTG-CCTGGCTGCCTCCA-GGTTCTTTCCCAGATAA-  47

seq1  TGGATGATTCAGACAAAATATCAGTCATCTGAAAAAAAAAAATACCTTTC  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGATGATTCAGACAAAATATCAGTCATC-GAAAAAAAAAAATACCTTTC  96

seq1  TCTAGTAGAAACTGAAGCTATGTTGAGCATGGCTTTATTAAGATTGTCTA  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAGAAA-TGAAGCTATGTTGAGCATGGCTTTATTAAGATTGTCTA  145

seq1  AGTCAACTATTACATTTCATAATAAACTTGGATATTCCCATCTAATTTCC  200
      ||||||||| ||||||||||||||||||||||||||||||||||  || |
seq2  AGTCAACTA-TACATTTCATAATAAACTTGGATATTCCCATCTA--TTAC  192

seq1  CTGGACAGAGAAACCTGAAGCTTCAAAAACCTGTACTAGATACTGCCAGA  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGACAGAGAAACC-GAAGCTTCAAAAACCTGTACTAGATACTGCCAGA  241

seq1  AACTCAAATTACAAAAACATAGTGAAGATTTC-TTATCTATGCCATGCCC  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACTCAAATTACAAAAACATAGTGAAGATTTCTTTATCTATGCCATGCCC  291

seq1  CCCCCCGCCCCCGCCCAGTACTTCCCTGGTATCTCCTTAATATAAGTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGCCCCCGCCCAGTACTTCCCTGGTATCTCCTTAATATAAGTAAG  341

seq1  TCAACCAACAAGAGATCTATATACGATTCTAGAAAAACTGCAGTTGGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAACAAGAGATCTATATACGATTCTAGAAAAACTGCAGTTGGTCA  391

seq1  TGCCACAAGACCCTGCCAAGTTCTCTGATTGAAAAGTCAGGAGTTTACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAAGACCCTGCCAAGTTCTCTGATTGAAAAGTCAGGAGTTTACTA  441

seq1  CTTAAGTCCTCTTAGGCACTGGCTAAATGAGGAGGGAGCATGCAAGGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCCTCTTAGGCACTGGCTAAATGAGGAGGGAGCATGCAAGGAAG  491

seq1  TTGGTGGAAAAATGCAGTTTTACACTAATGCTATAATAAAAAGTGGAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGAAAAATGCAGTTTTACACTAATGCTATAATAAAAAGTGGAGAT  541

seq1  AAATAAAATGATTTCTGACTCCCTAATTCAGAGGATTCCCTGGAGGAACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGATTTCTGACTCCCTAATTCAGAGGATTCCCTGGAGGAACC  591

seq1  AGTCCTAGCTGTGACACTGAAAAGTTTCAGAGCAAAGTCCAGATGTGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGCTGTGACACTGAAAAGTTTCAGAGCAAAGTCCAGATGTGGAA  641

seq1  CGGAAGAAAGGAGGTATTAACTCTCCAGAGGCCAGACGTTTCTGGATCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGAAAGGAGGTATTAACTCTCCAGAGGCCAGACGTTTCTGGATCAG  691

seq1  GGCAGAATACATTGCACTTTGGAACATGAGGCAAGAAACACAGCTTCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATACATTGCACTTTGGAACATGAGGCAAGAAACACAGCTTCAGG  741

seq1  CCACTTGCCAGGTATTGGTTATTTTTCTGTTGTCCCGATAAAACCCTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCCAGGTATTGGTTATTTTTCTGTTGTCCCGATAAAACCCTATG  791

seq1  ATCAAAGCAATTTACAGAAGAAAGAATTTATTGGGCTTAGGCTCCAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCAATTTACAGAAGAAAGAATTTATTGGGCTTAGGCTCCAGAGG  841

seq1  GATAAAGTCATTTATGGCAGGAAGTCATTACAGGAAGTGGCAGGCAAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTCATTTATGGCAGGAAGTCATTACAGGAAGTGGCAGGCAAGGC  891

seq1  AGCAGAGATCACACCCTCCAGCAGCAAACAAGAAGCAGAAAGAGAGAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATCACACCCTCCAGCAGCAAACAAGAAGCAGAAAGAGAGAACC  941

seq1  AAGAGTAGGGAGGCTGAGGCTATGAGCTCTCAAAGCCCACTCCCAGTGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGGGAGGCTGAGGCTATGAGCTCTCAAAGCCCACTCCCAGTGAC  991

seq1  GTACTTCCTTCAGCAAGGCCACACCTCCTAAGTCTTTCCTGACAGTGCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCCTTCAGCAAGGCCACACCTCCTAAGTCTTTCCTGACAGTGCCA  1041

seq1  CCTACTGGGGACTAAGAATTC  1070
      |||||||||||||||||||||
seq2  CCTACTGGGGACTAAGAATTC  1062