BAC Information

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BAC

Clone NameB6Ng01-152G08
Chromosome5 (Build37)
Map Location 54,005,121 - 54,151,390
singlet/doubletdoublet
Overlap geneRbpj, Cckar
Upstream geneD5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911
Downstream geneTbc1d19, Stim2, EG666377, LOC666380
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152G08.bB6Ng01-152G08.g
ACCDH947979DH947980
length2061,061
definitionDH947979|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G08, 5' end.DH947980|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,151,185 - 54,151,390)(54,005,121 - 54,006,174)
sequence
tttctttcgtaagggaaagtgcaggctagtgtatgaggtgctgtgctcag
gtttaaggacaggggacgggtgctaaggttcaactcaaatgggttggcct
taactaggttctgttgctgtctaaccatctgcccagggttcctttctgtt
gctgttcactgggaaaacagtcctgggctgtgtgcataggagagggaggg
agggag
gaattctttacagaaatattgaacagctttataagggcagaaacttttct
gatcccagactgaccaggaagcacttagaaaaatgaaacatctataaaca
cattttaaagttacatctagaagttgcttacaacatggatgaccagtaat
tgttgtttaaggttacttccaacgtgtaagctgctttcagcaaatgatca
ccacaacacacacacaattctgggttgggggcatagaagagtacataatt
taagatgaaagatatgcattagctgaggttatcaaaagtatagtaaggtg
tcccccaccccctctaacttctgtttagttctggctgtactggaactccc
ttcgtaggccaggctggccttgaattcagagattgccctggctctgcctc
ctgagtgctgggataaaaggcatgtgctaccatgtccagctatagtaatt
ttctcttaaaggcagtttaaacttaaaccagctgagtgcacagcagtata
gcgggtacatagtcttaagcgatctcaagcaacagtaattgactttactt
tgatctgtgagcccaccagttcatcctctggatcaagtattcttatgaaa
ctgtatcactacaggcagctcatctacatctctttgtgtcctagtctctt
acctgtcaaaggaggggtcaggatgtttgtgggctgccattaagtgtttg
acattgtactgaaaaacacacaccaactctacagtgggacattctgaaat
tctagctataaaattcaatgtaatttctacatgtattttctttaggccag
ttaattgagtgcagatgctgcctgttttaaaacagggctcttctacagaa
tgaggcaatgaggaattccagtagacctatacttttattctttgttctct
gttggacttatatttttgctggcttggccagtggcttactccccctttct
cagttgaagaggaactgggtcagcagccctcacctggttaccctgcgtgt
aggatacattaatttgcaggagccacagcattctttctagggaggggaca
ccacactgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54151185_54151390
seq2: B6Ng01-152G08.b_51_256 (reverse)

seq1  CTCCCTCCCTCCCTCTCCTATGCACACAGCCCAGGACTGTTTTCCCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCCTCTCCTATGCACACAGCCCAGGACTGTTTTCCCAGTG  50

seq1  AACAGCAACAGAAAGGAACCCTGGGCAGATGGTTAGACAGCAACAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAACAGAAAGGAACCCTGGGCAGATGGTTAGACAGCAACAGAACC  100

seq1  TAGTTAAGGCCAACCCATTTGAGTTGAACCTTAGCACCCGTCCCCTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGGCCAACCCATTTGAGTTGAACCTTAGCACCCGTCCCCTGTCC  150

seq1  TTAAACCTGAGCACAGCACCTCATACACTAGCCTGCACTTTCCCTTACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTGAGCACAGCACCTCATACACTAGCCTGCACTTTCCCTTACGA  200

seq1  AAGAAA  206
      ||||||
seq2  AAGAAA  206

seq1: chr5_54005121_54006174
seq2: B6Ng01-152G08.g_67_1127

seq1  GAATTCTTTACAGAAATATTGAACAGCTTTATAAGGGCAGAAACTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAGAAATATTGAACAGCTTTATAAGGGCAGAAACTTTTCT  50

seq1  GATCCCAGACTGACCAGGAAGCACTTAGAAAAATGAAACATCTATAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGACTGACCAGGAAGCACTTAGAAAAATGAAACATCTATAAACA  100

seq1  CATTTTAAAGTTACATCTAGAAGTTGCTTACAACATGGATGACCAGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAGTTACATCTAGAAGTTGCTTACAACATGGATGACCAGTAAT  150

seq1  TGTTGTTTAAGGTTACTTCCAACGTGTAAGCTGCTTTCAGCAAATGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTAAGGTTACTTCCAACGTGTAAGCTGCTTTCAGCAAATGATCA  200

seq1  CCACAACACACACACAATTCTGGGTTGGGGGCATAGAAGAGTACATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACACACACACAATTCTGGGTTGGGGGCATAGAAGAGTACATAATT  250

seq1  TAAGATGAAAGATATGCATTAGCTGAGGTTATCAAAAGTATAGTAAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAAAGATATGCATTAGCTGAGGTTATCAAAAGTATAGTAAGGTG  300

seq1  TCCCCCACCCCCTCTAACTTCTGTTTAGTTCTGGCTGTACTGGAACTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCCCTCTAACTTCTGTTTAGTTCTGGCTGTACTGGAACTCCC  350

seq1  TTCGTAGGCCAGGCTGGCCTTGAATTCAGAGATTGCCCTGGCTCTGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAGGCCAGGCTGGCCTTGAATTCAGAGATTGCCCTGGCTCTGCCTC  400

seq1  CTGAGTGCTGGGATAAAAGGCATGTGCTACCATGTCCAGCTATAGTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTGGGATAAAAGGCATGTGCTACCATGTCCAGCTATAGTAATT  450

seq1  TTCTCTTAAAGGCAGTTTAAACTTAAACCAGCTGAGTGCACAGCAGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAAAGGCAGTTTAAACTTAAACCAGCTGAGTGCACAGCAGTATA  500

seq1  GCGGGTACATAGTCTTAAGCGATCTCAAGCAACAGTAATTGACTTTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTACATAGTCTTAAGCGATCTCAAGCAACAGTAATTGACTTTACTT  550

seq1  TGATCTGTGAGCCCACCAGTTCATCCTCTGGATCAAGTATTCTTATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTGAGCCCACCAGTTCATCCTCTGGATCAAGTATTCTTATGAAA  600

seq1  CTGTATCACTACAGGCAGCTCATCTACATCTCTTTGTGTCCTAGTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCACTACAGGCAGCTCATCTACATCTCTTTGTGTCCTAGTCTCTT  650

seq1  ACCTGTCAAAGGAGGGGTCAGGATG-TTGTGGGCTGCCATTAAGTGTTTG  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCTGTCAAAGGAGGGGTCAGGATGTTTGTGGGCTGCCATTAAGTGTTTG  700

seq1  ACATTGTACTGAAAAACACACACCAACTCTACAGTGGGACATTCTGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTACTGAAAAACACACACCAACTCTACAGTGGGACATTCTGAAAT  750

seq1  TCTAGCTATAAAATTCAATGTAATTTCTACATGTATTTTCTTTAGGCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTATAAAATTCAATGTAATTTCTACATGTATTTTCTTTAGGCCAG  800

seq1  TCAATTGAGTGCAGATGCTGCCTGTTTTAAAAACAGGGCTCTTCTACAGA  849
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAATTGAGTGCAGATGCTGCCTGTTTT-AAAACAGGGCTCTTCTACAGA  849

seq1  ATGAGGCAATGAGGAAGTCCAGTAGACCTATACTTTTATTCTTTGTTCTC  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGAGGCAATGAGGAATTCCAGTAGACCTATACTTTTATTCTTTGTTCTC  899

seq1  TGTTGGACTTATATTTTTGCTGGCTTGGCCAGTGGCTTACTCCCCC-TTC  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTTGGACTTATATTTTTGCTGGCTTGGCCAGTGGCTTACTCCCCCTTTC  949

seq1  TCAGTGGAAGAGGAACTGGGTCAGCAGCACTCACCTGG-TACCCTGCGTG  997
      ||||| |||||||||||||||||||||| ||||||||| |||||||||||
seq2  TCAGTTGAAGAGGAACTGGGTCAGCAGCCCTCACCTGGTTACCCTGCGTG  999

seq1  TAGGATACATTTATTTGCAGGAG-CACAGCATTCTTCC--AGGAGGGGAC  1044
      ||||||||||| ||||||||||| |||||||||||| |   |||||||||
seq2  TAGGATACATTAATTTGCAGGAGCCACAGCATTCTTTCTAGGGAGGGGAC  1049

seq1  A-CACAC-GTGC  1054
      | ||||| ||||
seq2  ACCACACTGTGC  1061