BAC Information

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BAC

Clone NameB6Ng01-152J13
Chromosome5 (Build37)
Map Location 130,564,636 - 130,676,511
singlet/doubletdoublet
Overlap geneTpst1, Kctd7, Rabgef1
Upstream geneLOC100040441, Gpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp
Downstream gene0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152J13.bB6Ng01-152J13.g
ACCDH948132DH948133
length1,1371,073
definitionDH948132|Mus musculus domesticus DNA, BAC clone: B6Ng01-152J13, 5' end.DH948133|Mus musculus domesticus DNA, BAC clone: B6Ng01-152J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,675,374 - 130,676,511)(130,564,636 - 130,565,716)
sequence
gaattcaaagtgcaccttaatctaagtgcatttcaaatctccaagaaccg
ttccctacgttgtatttaataaatttatctgagtattgtcgtaaagctag
agtatgtgacttcagacataaatagtaagttttataacctggagtcaaag
gccagtagagattccttcaaacacctggagaggtagcccgatggataaag
gcacttgctgccaagcctggtgactcaaatttgatccctgagccccacat
ggtagaggtgagagcagactcctgacagtcatcctctgacctctaaatac
ccatgcctacctacaagcacacacacacacaatcaaccaatcaatgcaat
tttaaaaatccacctgagctgtatctggatgttgcccatcatgctagaca
ccaaagatacacaagacacatgaacaactggaccccttaccacaaaacac
ttggcgctagtataaaagaaaattagctgcacagtagttcttaagtcagg
aggaatttgaagcttatcaggtctccagcaccaattagtgatgctctgaa
cacacagcatagtgttcctgtttgttttttttttttctatttccttttta
tttgagacagtgttgcgccgggcgtggtggcgcacgcctttaatcccagc
acttgggaggcagaggcaggtggatttctgagttccaggccagcctggtc
tacagagtgagttccaggatagccagggctacacagagaaaccctgtctc
aaaaaaaaaaacaaaccccctccccccccccaaaaaaagaaaagaaagag
acagtgttgcactgtgcagccctggctagcctagaacttactatgtagac
cactaaacttaaacacagaggatccgcctgtctctgcctctaaacttgct
ggttactaaaggtgtgcatcactatgctaggacttgcttctttattttca
gactcactaaaaagtcaattaagtgcttaaagaatagggtagtttattgc
ttcttcagaagagaaaaacccaagctgatcagtggtttcttgtagaaaca
tataacacagtagtatatttctgtcgactacaggtgtaatcactttatcg
agggtctcttttgaacttgcaaaaacaacctctaact
gaattcttttgttggttgaaaaaaaaaagagagaggatgatgatgatgat
gatgatctaacagcaaaatggggctggagagatgactcagcaattacaga
aattggctgctctttcagaggacctgcgttcccacatggtggctcacaac
catctgttagcgcagtttcaggggtccaatgttctcttctggcctccgtg
ggcaccagggacataagtggtacacagacacccccatacacacacagtaa
aactagcaagaccctttgaggataccatttataatcgcaaaactttgttg
ctgctttcaaataactttgtttctgtttacttgtagttctttgctttact
ctttgattgtttttttgaacatctgctttgtttcagatgactctaggtgt
tgcaagattaggaaatggtacttcacttcatgtttacctgtgggttcctg
acttgatccctacccgctgttcaagtatccacagcatcctggatgatgat
gtgtttagcagagattgcagtggagtggagtgaactaaccacagtgcagt
ggtctaagtgcactcacgatgctttacccagtagtttgaggttgcagaag
gggaagtggttgatttggggctggaggatgaggcacaagcacccagagaa
ggcttcccggaggagatgtgtgggaaggagcaagcacaggcagctggtga
ccggctggaactggcaggagtggtccagagggcaggctccgtggcagtgg
tcctgctaggggccgggggaggagaccagtgtgtgaataccctggacgct
gctctttaaagctcttcacatgtggactgagggggacttcattacagagt
gctgcccagcatgcacaaagctctgcttccatcctagcactgcgtaactt
aacctgattggcccaagcctgcagtctgctggacatgtaaaggcaggaga
acagagggtcgagggccacatgacatctgccttaagaaaagaagcccttc
cacctctgctggtccagggcattgaaggagagcctgcaagtgtgcgttcc
ttccttctgctccccgcctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_130675374_130676511
seq2: B6Ng01-152J13.b_46_1182 (reverse)

seq1  AGTTTGAGGTTGTTTTTGCAGTGTCAAGAG-GACACCTCTGATAAAGTTG  49
      |||| |||||||||||||||   |||| || ||| |||| ||||||||  
seq2  AGTTAGAGGTTGTTTTTGCAAGTTCAAAAGAGAC-CCTC-GATAAAGT--  46

seq1  TATTACA-CTGTAGTATGTACAGAATATATACTACTGTGTTTATATTGTA  98
       |||||| ||||||  |  |||||| ||||||||||||| ||||| ||| 
seq2  GATTACACCTGTAG--TCGACAGAA-ATATACTACTGTG-TTATA-TGTT  91

seq1  TCTAC-AGAAA-CACTGATCAGCTTGGGTTTTTCTTCTTCTG-AGAAGC-  144
      ||||| ||||| |||||||||||||||||||||| ||||||| |||||| 
seq2  TCTACAAGAAACCACTGATCAGCTTGGGTTTTTC-TCTTCTGAAGAAGCA  140

seq1  ATAAACTACCCTTATTCTTTAAGCACTTAATTGACTTTTTAGTGAGTCTG  194
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTACCC-TATTCTTTAAGCACTTAATTGACTTTTTAGTGAGTCTG  189

seq1  AAAATAAAGAAGCAAGT-CTAGCATAGTGATGCACACCTTTAGTAA-CAG  242
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  AAAATAAAGAAGCAAGTCCTAGCATAGTGATGCACACCTTTAGTAACCAG  239

seq1  C-AGTTTAGAGGCAGAGACAGGCGGAT-CTCTGTGTTTAAGTTTAGTGGT  290
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAGTTTAGAGGCAGAGACAGGCGGATCCTCTGTGTTTAAGTTTAGTGGT  289

seq1  CTACATAGTAAGTTCTAGGCTAGCCAGGGCTGCACAGTGCAACACTGTCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTAAGTTCTAGGCTAGCCAGGGCTGCACAGTGCAACACTGTCT  339

seq1  CTTTCTTTCTTTTTTTTGGGGGGGGGGAGGGGGTTTGTTTTTTTTTTTGA  390
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCTTTTTTTGGGGGGGGGGAGGGGGTTTGTTTTTTTTTTTGA  389

seq1  GACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGA  439

seq1  CCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGC  489

seq1  TGGGATTAAAGGCGTGCGCCACCACGCCCGGCGCAACACTGTCTCAAATA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCGTGCGCCACCACGCCCGGCGCAACACTGTCTCAAATA  539

seq1  AAAAGGAAATAGAAAAAAAAAAAACAAACAGGAACACTATGCTGTGTGTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAATAGAAAAAAAAAAAACAAACAGGAACACTATGCTGTGTGTT  589

seq1  CAGAGCATCACTAATTGGTGCTGGAGACCTGATAAGCTTCAAATTCCTCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATCACTAATTGGTGCTGGAGACCTGATAAGCTTCAAATTCCTCC  639

seq1  TGACTTAAGAACTACTGTGCAGCTAATTTTCTTTTATACTAGCGCCAAGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAAGAACTACTGTGCAGCTAATTTTCTTTTATACTAGCGCCAAGT  689

seq1  GTTTTGTGGTAAGGGGTCCAGTTGTTCATGTGTCTTGTGTATCTTTGGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGGTAAGGGGTCCAGTTGTTCATGTGTCTTGTGTATCTTTGGTG  739

seq1  TCTAGCATGATGGGCAACATCCAGATACAGCTCAGGTGGATTTTTAAAAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATGATGGGCAACATCCAGATACAGCTCAGGTGGATTTTTAAAAT  789

seq1  TGCATTGATTGGTTGATTGTGTGTGTGTGTGCTTGTAGGTAGGCATGGGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGATTGGTTGATTGTGTGTGTGTGTGCTTGTAGGTAGGCATGGGT  839

seq1  ATTTAGAGGTCAGAGGATGACTGTCAGGAGTCTGCTCTCACCTCTACCAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGGTCAGAGGATGACTGTCAGGAGTCTGCTCTCACCTCTACCAT  889

seq1  GTGGGGCTCAGGGATCAAATTTGAGTCACCAGGCTTGGCAGCAAGTGCCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTCAGGGATCAAATTTGAGTCACCAGGCTTGGCAGCAAGTGCCT  939

seq1  TTATCCATCGGGCTACCTCTCCAGGTGTTTGAAGGAATCTCTACTGGCCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATCGGGCTACCTCTCCAGGTGTTTGAAGGAATCTCTACTGGCCT  989

seq1  TTGACTCCAGGTTATAAAACTTACTATTTATGTCTGAAGTCACATACTCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCAGGTTATAAAACTTACTATTTATGTCTGAAGTCACATACTCT  1039

seq1  AGCTTTACGACAATACTCAGATAAATTTATTAAATACAACGTAGGGAACG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACGACAATACTCAGATAAATTTATTAAATACAACGTAGGGAACG  1089

seq1  GTTCTTGGAGATTTGAAATGCACTTAGATTAAGGTGCACTTTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGAGATTTGAAATGCACTTAGATTAAGGTGCACTTTGAATTC  1137

seq1: chr5_130564636_130565716
seq2: B6Ng01-152J13.g_67_1139

seq1  GAATTCTTTTGTTGGTTGAAAAAAAAAAGAGAGAGGATGATGATGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTGGTTGAAAAAAAAAAGAGAGAGGATGATGATGATGAT  50

seq1  GATGATCTAACAGCAAAATGGGGCTGGAGAGATGACTCAGCAATTACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTAACAGCAAAATGGGGCTGGAGAGATGACTCAGCAATTACAGA  100

seq1  AATTGGCTGCTCTTTCAGAGGACCTGCGTTCCCACATGGTGGCTCACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTGCTCTTTCAGAGGACCTGCGTTCCCACATGGTGGCTCACAAC  150

seq1  CATCTGTTAGCGCAGTTTCAGGGGTCCAATGTTCTCTTCTGGCCTCCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTAGCGCAGTTTCAGGGGTCCAATGTTCTCTTCTGGCCTCCGTG  200

seq1  GGCACCAGGGACATAAGTGGTACACAGACACCCCCATACACACACAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGGGACATAAGTGGTACACAGACACCCCCATACACACACAGTAA  250

seq1  AACTAGCAAGACCCTTTGAGGATACCATTTATAATCGCAAAACTTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCAAGACCCTTTGAGGATACCATTTATAATCGCAAAACTTTGTTG  300

seq1  CTGCTTTCAAATAACTTTGTTTCTGTTTACTTGTAGTTCTTTGCTTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCAAATAACTTTGTTTCTGTTTACTTGTAGTTCTTTGCTTTACT  350

seq1  CTTTGATTGTTTTTTTGAACATCTGCTTTGTTTCAGATGACTCTAGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTGTTTTTTTGAACATCTGCTTTGTTTCAGATGACTCTAGGTGT  400

seq1  TGCAAGATTAGGAAATGGTACTTCACTTCATGTTTACCTGTGGGTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATTAGGAAATGGTACTTCACTTCATGTTTACCTGTGGGTTCCTG  450

seq1  ACTTGATCCCTACCCGCTGTTCAAGTATCCACAGCATCCTGGATGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATCCCTACCCGCTGTTCAAGTATCCACAGCATCCTGGATGATGAT  500

seq1  GGGTTTAGCAGAGATTGCAGTGGAGTGGAGTGAACTAACCACAGTGCAGT  550
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGCAGAGATTGCAGTGGAGTGGAGTGAACTAACCACAGTGCAGT  550

seq1  GGTCTAAGTGCACTCACGATGCTTTACCCAGTAGTTTGAGGTTGCAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAGTGCACTCACGATGCTTTACCCAGTAGTTTGAGGTTGCAGAAG  600

seq1  GGGAAGTGGTTGATTTGGGGCTGGAGGATGAGGCACAAGCACCCAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGGTTGATTTGGGGCTGGAGGATGAGGCACAAGCACCCAGAGAA  650

seq1  GGCTTCCCGGAGGAGATGTGTGGGAAGGAGCAAGCACAGGCAGCTGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCGGAGGAGATGTGTGGGAAGGAGCAAGCACAGGCAGCTGGTGA  700

seq1  CCGGCTGGAACTGGCAGGAGTGGTCCAGAGGGCAGGCTCCGTGGCAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGGAACTGGCAGGAGTGGTCCAGAGGGCAGGCTCCGTGGCAGTGG  750

seq1  TCCTGCTAGGGGCCGGGGGAGGAGACCAGTGTGTGAATACCCTGGACGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTAGGGGCCGGGGGAGGAGACCAGTGTGTGAATACCCTGGACGCT  800

seq1  GCTCTTTAAAAGCTCTTCCACATGTGGACTGAGGGGGACTCAGTTACAGA  850
      ||||||| ||||||||| ||||||||||||||||||||||   |||||||
seq2  GCTCTTT-AAAGCTCTT-CACATGTGGACTGAGGGGGACTTCATTACAGA  848

seq1  GTGCTGCCCAGCATGCACAAAGCTCTGCTTCCATCCCTAGCACTGCGTAA  900
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  GTGCTGCCCAGCATGCACAAAGCTCTGCTTCCAT-CCTAGCACTGCGT-A  896

seq1  ACTAAGCATGA-TGGCCCATGCCTGCAGTCTGCTGGGACATGTAAAGGCA  949
      ||| | | ||| ||||||| |||||||||||||| |||||||||||||||
seq2  ACTTAACCTGATTGGCCCAAGCCTGCAGTCTGCT-GGACATGTAAAGGCA  945

seq1  GGAGGAACAGAGGGTCGAGGGCCACATGACACTCTGCCTTAAGAAAGAGG  999
      ||| ||||||||||||||||||||||||||| |||||||||||||| || 
seq2  GGA-GAACAGAGGGTCGAGGGCCACATGACA-TCTGCCTTAAGAAA-AG-  991

seq1  AAGGCCCTTCCACCCGTGCTGGTCCAGGGCACTGAAGGAGAGCCTGCAAG  1049
       | |||||||||||  ||||||||||||||| ||||||||||||||||||
seq2  -AAGCCCTTCCACCTCTGCTGGTCCAGGGCATTGAAGGAGAGCCTGCAAG  1040

seq1  TGTGCGTCCCTTCC-TCTGCTCCCCGCCTCTGC  1081
      ||||||| |||||| ||||||||||||||||||
seq2  TGTGCGTTCCTTCCTTCTGCTCCCCGCCTCTGC  1073