BAC Information

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BAC

Clone NameB6Ng01-152K01
Chromosome5 (Build37)
Map Location 97,368,854 - 97,502,031
singlet/doubletdoublet
Overlap geneLOC670358, Bmp2k
Upstream geneCxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
Downstream genePaqr3, LOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2, EG435856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K01.bB6Ng01-152K01.g
ACCDH948156DH948157
length1,0671,153
definitionDH948156|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K01, 5' end.DH948157|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,368,854 - 97,369,935)(97,500,881 - 97,502,031)
sequence
gaattccagaaataaaaagcaaactctttgaaatcaaagctctgactcca
taagccttaatagtcatgatcagaatttaaaaatagaaaccacgaaaatc
tctgaaatagccaggttcagaattctggctgtcaagatagctcaaccagt
agacgtgctcgctgcacaggcctggcaaccggagtagagtcccctgaagc
cacgaaagggtggaaggagggagctgaccccatgaccccatgaccccatg
accccatgacctcctgagttttcctctcactaccactcacgtgccatggc
atgcatgctcacagcatacacacatgagagagagagagagagagagaaag
agagagagagagagaattttagaaaagagagttatacatcttcattctcc
gccccttctccctttcccacgccctcatccacacatgtgcttcttttgct
aatgcacaaggaagcatccctgtgtcactcaggcactgggaaacctgccc
agcaaatacagagccatgccaaatgatatcatccatccaagttagcacag
gactcatagctgacctgtttcaccgatgatcaaggttcccacggggtctc
tcaccacaggaccttgctaggctggtagataacgaatggcaatgtgactt
gttaagatgcccacgcctgttagttctcctgtagcttcagcggcctggat
ttgaaccttatagaacagttgttcccttgtctcaggtggtttatagatga
gcagaaagctggacctttctgaaaggtgctcaattaggaggggttataat
ctccacgcccagttctctgtagtaaggtggatgatgagagggtttcaatg
cccaccatccggtgagacatcatgagacagaaaaatttaatgaagccact
ttccttaggaaagaaaaagaaacaacaacaattagagcaaaccaaggaaa
gaaccagaaggtcctttcagcactcacctagtcctctcttcttgggacac
aataactcagctcatcgatagtaccaagctcagatccatgaggccaattg
ctcaagtccaacagact
gaattcttttacatttggtatataatcttcaacaatcaagcaaattgtgg
taaatacataaacagcactgtgcagttagacataataacaacaataacaa
caacaaaaaccttcatgtgggagtagctaattgttatatagaagtctcca
agaggaaaaaatacaggagttactgttatataaaaaaactcatttactta
attattttcaaacagaagtcagaatacatttataacaaaatgcatcatgt
tctattgtcccacaaaacacaaaatcaatgtttaatggaatatttttata
tcacttaacatttctaaaattcacataatctgggtctcagaacacagact
acaaaataaatacacattaacttactacacaatcactcacatagatatga
aaacacaatgcttactgtggagctacgttttaaagacctggtcaccccta
acccgtgttaagtttcgaatgaatgggttctctttcagttagaacaaagc
ctgggttacacataaggaatctgtctcaacctgacacataaaaacattgt
gctgggaggtgaagacagattcttctcaaagtgttcaaatgatacaaaca
gtggaaaaggggtaggactttaacattttgaaaagcagagtcctttccat
cataccaccacgcagtcaaaatactctagaagatatttttaaatatgcag
cttaaatagatgatgccctcaaacaaagacttaacagttaacaactagag
ttgtaaaaagaagtattcactggtagtacagagtcagtcttaatgtgcct
aaaaatcgtttactctacactgaagacacttgtaacaggtcacaataaac
aaaagtgaatgggctgaaaactaccataaaccaattagacacccttacat
ttacagctgttgtatattcaaaatttataccacataacttagtaagaatg
gcaaaacaaccagtccttgagtttctgttattcctcctagtcattttgtg
aaatttaaacagaaaacagttaattctatttgtccaagaatcatccttct
actggtcttcatagcaggtaataaggacaccaccatctaaccaattcagt
tgaacaatttccccaacagtgttattttcgtcctgtttacatatgtagta
tcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_97368854_97369935
seq2: B6Ng01-152K01.b_44_1110

seq1  GAATTCCAGAAATAAAAAGCAAACTCTTTGAAATCAAAGCTCTGACTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAATAAAAAGCAAACTCTTTGAAATCAAAGCTCTGACTCCA  50

seq1  TAAGCCTTAATAGTCATGATCAGAATTTAAAAATAGAAACCACGAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTAATAGTCATGATCAGAATTTAAAAATAGAAACCACGAAAATC  100

seq1  TCTGAAATAGCCAGGTTCAGAATTCTGGCTGTCAAGATAGCTCAACCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATAGCCAGGTTCAGAATTCTGGCTGTCAAGATAGCTCAACCAGT  150

seq1  AGACGTGCTCGCTGCACAGGCCTGGCAACCGGAGTAGAGTCCCCTGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGCTCGCTGCACAGGCCTGGCAACCGGAGTAGAGTCCCCTGAAGC  200

seq1  CACGAAAGGGTGGAAGGAGGGAGCTGACCCCATGACCCCATGACCCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAAGGGTGGAAGGAGGGAGCTGACCCCATGACCCCATGACCCCATG  250

seq1  ACCCCATGACCTCCTGAGTTTTCCTCTCACTACCACTCACGTGCCATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGACCTCCTGAGTTTTCCTCTCACTACCACTCACGTGCCATGGC  300

seq1  ATGCATGCTCACAGCATACACACATGAGAGAGAGAGAGAGAGAGAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTCACAGCATACACACATGAGAGAGAGAGAGAGAGAGAGAAAG  350

seq1  AGAGAGAGAGAGAGAATTTTAGAAAAGAGAGTTATACATCTTCATTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAATTTTAGAAAAGAGAGTTATACATCTTCATTCTCC  400

seq1  GCCCCTTCTCCCTTTCCCACGCCCTCATCCACACATGTGCTTCTTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCTCCCTTTCCCACGCCCTCATCCACACATGTGCTTCTTTTGCT  450

seq1  AATGCACAAGGAAGCATCCCTGTGTCACTCAGGCACTGGGAAACCTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACAAGGAAGCATCCCTGTGTCACTCAGGCACTGGGAAACCTGCCC  500

seq1  AGCAAATACAGAGCCATGCCAAATGATATCATCCATCCAAGTTAGCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATACAGAGCCATGCCAAATGATATCATCCATCCAAGTTAGCACAG  550

seq1  GACTCATAGCTGACCTGTTTCACCGATGATCAAGGTTCCCACGGGGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATAGCTGACCTGTTTCACCGATGATCAAGGTTCCCACGGGGTCTC  600

seq1  TCACCACAGGACCTTGCTAGGCTGGTAGATAACGAATGGCAATGTGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAGGACCTTGCTAGGCTGGTAGATAACGAATGGCAATGTGACTT  650

seq1  GTTAAGATGCCCACGCCTGTTAGTTCTCCTGTAGCTTCAGCGGCCTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATGCCCACGCCTGTTAGTTCTCCTGTAGCTTCAGCGGCCTGGAT  700

seq1  TTGAACCTTATAGAACAGTTGTTCCCTTGTCTCAGGTGGTTTATAGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTTATAGAACAGTTGTTCCCTTGTCTCAGGTGGTTTATAGATGA  750

seq1  GCAGAAAGCTGGACCTTTCTGAAAGGTGCTCAATTAGGAGGGGTTATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGCTGGACCTTTCTGAAAGGTGCTCAATTAGGAGGGGTTATAAT  800

seq1  CTCCACGCCCAGTTCTCTGTAGTAAGGTGGATGATGAGAGGGTTTCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGCCCAGTTCTCTGTAGTAAGGTGGATGATGAGAGGGTTTCAATG  850

seq1  CCCACCATCCGGTGAGACATCATGAGACAGAAAAATTTTTAATGAAGCCA  900
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  CCCACCATCCGGTGAGACATCATGAGACAGAAAAA--TTTAATGAAGCCA  898

seq1  CTTTCCTTAAGGAAAAGAAAAAAGAAAACAAACAAACAAATAAAAGCAAA  950
      |||||||| ||||||   |||||||||   |||||   ||| | |||  |
seq2  CTTTCCTT-AGGAAA--GAAAAAGAAA--CAACAA--CAATTAGAGC--A  939

seq1  AACAAAAGAAAGAACCCAGAAAGTTCCTTTCAAGCACTCACCAAGT-CTC  999
      ||| || ||||||| |||| ||| ||||||| |||||||||| ||| |||
seq2  AACCAAGGAAAGAA-CCAG-AAGGTCCTTTC-AGCACTCACCTAGTCCTC  986

seq1  TCTTCTGTGGACACAATAACTCAGC-CAGCGGTAGGTACAAAGCTCAGA-  1047
      ||||||  ||||||||||||||||| || || || |||| ||||||||| 
seq2  TCTTCTTGGGACACAATAACTCAGCTCATCGATA-GTACCAAGCTCAGAT  1035

seq1  CCATGAGGCACATTTGGCTAAAGTCCAACATGACT  1082
      |||||||||  |||  ||| |||||||||| ||||
seq2  CCATGAGGCCAATT--GCTCAAGTCCAACA-GACT  1067

seq1: chr5_97500881_97502031
seq2: B6Ng01-152K01.g_66_1218 (reverse)

seq1  CGATACTTACTATGTTAAACAGGAACGGAAATAACACATGTTTGGGGAAA  50
      |||||||   |||| |||||||| ||| ||||||||| || |||||||||
seq2  CGATACTACATATG-TAAACAGG-ACGAAAATAACAC-TG-TTGGGGAAA  46

seq1  TTG-TCAACTTGGATTTGGTTAGATGGTGGTGTCCTT-GTAACTGCTAAT  98
      ||| ||||||  || ||||||||||||||||||||||  || ||||| ||
seq2  TTGTTCAACT--GAATTGGTTAGATGGTGGTGTCCTTATTACCTGCT-AT  93

seq1  GAAGAACAGTGGAAGGTTGATTCTTGGACAAATAG-ATTTACTGTTTTCT  147
      ||||| |||| ||||| |||||||||||||||||| ||| ||||||||||
seq2  GAAGACCAGTAGAAGGATGATTCTTGGACAAATAGAATTAACTGTTTTCT  143

seq1  GTTTAAAATTTCAACAAAATGACTAAGAGGAATAACAGAAACTCAAGGAC  197
      |||| ||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GTTT-AAATTTC-ACAAAATGACTAGGAGGAATAACAGAAACTCAAGGAC  191

seq1  TGGTTGTTTTG-CAATCTTACTAAG-TATGTGGTATAAATTTTGAATATA  245
      ||||||||||| || |||||||||| ||||||||||||||||||||||||
seq2  TGGTTGTTTTGCCATTCTTACTAAGTTATGTGGTATAAATTTTGAATATA  241

seq1  CAACAGCTGTAAATGTAAGGGTGTCTAATTGGTTTATGGTAGTTTTCAG-  294
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAACAGCTGTAAATGTAAGGGTGTCTAATTGGTTTATGGTAGTTTTCAGC  291

seq1  CCATTCACTTTTGTTTATTGTGACCTGTTAC-AGTGTCTTCAGTGTAGAG  343
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCATTCACTTTTGTTTATTGTGACCTGTTACAAGTGTCTTCAGTGTAGAG  341

seq1  T-AACGATTTTTAGGCACATT-AGACTGACTCTGTACTACCAGTGAATAC  391
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAACGATTTTTAGGCACATTAAGACTGACTCTGTACTACCAGTGAATAC  391

seq1  TTCTTTTTACAACTCTAGTTGTTAACTGTTAAGTCTTTGTTTGAGGGCAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTACAACTCTAGTTGTTAACTGTTAAGTCTTTGTTTGAGGGCAT  441

seq1  CATCTATTTAAGCTGCATATTT-AAAATATCTTCTAGAGTATTTTGACTG  490
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATCTATTTAAGCTGCATATTTAAAAATATCTTCTAGAGTATTTTGACTG  491

seq1  CGTGGTGGTATGATGGAAAGGACTCTGC-TTTCAAAATGTTAAAGTCCTA  539
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CGTGGTGGTATGATGGAAAGGACTCTGCTTTTCAAAATGTTAAAGTCCTA  541

seq1  CCCCTTTTCCACTGTTTGTATCATTTGAACACTTTGAGAAGAATCTGTCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTCCACTGTTTGTATCATTTGAACACTTTGAGAAGAATCTGTCT  591

seq1  TCACCTCCCAGCACAATGTTTTTATGTGTCAGGTTGAGACAGATTCCTTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCCCAGCACAATGTTTTTATGTGTCAGGTTGAGACAGATTCCTTA  641

seq1  TGTGTAACCCAGGCTTTGTTCTAACTGAAAGAGAACCCATTCATTCGAAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACCCAGGCTTTGTTCTAACTGAAAGAGAACCCATTCATTCGAAA  691

seq1  CTTAACACGGGTTAGGGGTGACCAGGTCTTTAAAACGTAGCTCCACAGTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACGGGTTAGGGGTGACCAGGTCTTTAAAACGTAGCTCCACAGTA  741

seq1  AGCATTGTGTTTTCATATCTATGTGAGTGATTGTGTAGTAAGTTAATGTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTGTTTTCATATCTATGTGAGTGATTGTGTAGTAAGTTAATGTG  791

seq1  TATTTATTTTGTAGTCTGTGTTCTGAGACCCAGATTATGTGAATTTTAGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTGTAGTCTGTGTTCTGAGACCCAGATTATGTGAATTTTAGA  841

seq1  AATGTTAAGTGATATAAAAATATTCCATTAAACATTGATTTTGTGTTTTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAGTGATATAAAAATATTCCATTAAACATTGATTTTGTGTTTTG  891

seq1  TGGGACAATAGAACATGATGCATTTTGTTATAAATGTATTCTGACTTCTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAATAGAACATGATGCATTTTGTTATAAATGTATTCTGACTTCTG  941

seq1  TTTGAAAATAATTAAGTAAATGAGTTTTTTTATATAACAGTAACTCCTGT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATAATTAAGTAAATGAGTTTTTTTATATAACAGTAACTCCTGT  991

seq1  ATTTTTTCCTCTTGGAGACTTCTATATAACAATTAGCTACTCCCACATGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCCTCTTGGAGACTTCTATATAACAATTAGCTACTCCCACATGA  1041

seq1  AGGTTTTTGTTGTTGTTATTGTTGTTATTATGTCTAACTGCACAGTGCTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTGTTGTTGTTATTGTTGTTATTATGTCTAACTGCACAGTGCTG  1091

seq1  TTTATGTATTTACCACAATTTGCTTGATTGTTGAAGATTATATACCAAAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATTTACCACAATTTGCTTGATTGTTGAAGATTATATACCAAAT  1141

seq1  GTAAAAGAATTC  1151
      ||||||||||||
seq2  GTAAAAGAATTC  1153